These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 851 fasta sequence [CCGAGTCGATCCAACGCAAACGAAAAGATACAATTGCAAACCAATATTAGCCAATGTGATTATACAAAAAAAGAAAAAAAAACTCACCGTAATAGTTAACACACGGCGGTCCTTCGCATCGCCGTGTGTATCGATGTGTGTATTGTTACTGTGTAAAGAGGTGAGTGTGAAGCGGGTGGTGCTAAAACAAAACAAAAAACAAAAACAGAAAACAGAAACTAACTAACACATTAGTTCCCTGCCACCTCCTTGTCATTAGACCGTTGTTAAACATATTACATGTTGAATTGAGGATGCAATTCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGAAACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATACACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAAAACAAACATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGTGTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTTTTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTACAAACATTTTTTCAACTAGCGCACAGTTGTATATGAAGTAATTGCAATTGTGTGTGTGTTTCTTAAATTACGATTTTATGTTAACTAACGACAGACAGAAGAAAGAGAGTAAACTTTCTCCATGAGACTGCAATGGGAATTTGTTTAAAAATAAACACACAAACAATTCACCTAAACTATGACTCTGAAAAT] [+] EMBL BM610553 [CCGAGTCGATCCAACGCAAACGAAAAGATACAATTGCAAACCAATATTAGCCAATGTGATTATACAAAAAAAGAAAAAAAAACTCACCGTAATAGTTAACACACGGCGGTCCTTCGCATCGCCGTGTGTATCGATGTGTGTATTGTTACTGTGTAAAGAGGTGAGTGTGAAGCGGGTGGTGCTAAAACAAAACAAAAAACAAAAACAGAAAACAGAAACTAACTAACACATTAGTTCCCTGCCACCTCCTTGTCATTAGACCGTTGTTAAACATATTACATGTTGAATTGAGGATGCAATTCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGAAACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATACACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAAAACAAACATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGTGTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTTTTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTACAAACATTT ] [+] EMBL BM623732 [ ACAAAAACAGAAAACAGAAACTAACTAACACATTAGTTCCCTGCCACCTCCTTGTCATTAGACCGTTGTTAAACATATTACATGTTGAATTGAGGATGCAATTCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGAAACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATACACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAAAACAAACATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGTGTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTTTTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTACAAACATTTTTTCAACTAGCGCACAGTTGTATATGAAGTAATTGCAATTGTGTGT ] [+] EMBL BM611123 [ ccgACATATTACATGTTGAATTGAGGATGCAATTCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGAAACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATACACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAAAACAAACATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGTGTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTTTTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTACAAACATTTTTTCAACTAGCGCACAGTTGTATATGAAGTAATTGCAATTGTGTGTGTGTTTCTTAAATTACGATTTTATGTTAACTAACGACAGACAGAAGAAAGAGAGTAAACTTTCTCCATGAGACTGCAATGGGAATTTGTTTAAAAATAAACACACAAACAATTCACCTAAACTATGACTCTGAAAAT] consensusID : consensus_5810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [AGGCAAGAATCCGCACGATTGTAATTACGATTTTATGTTAACNTAACGACAGACAGAAGAAAGAGAGTAAACTTTCTCCATGAGACTGCAATGGGAATTTGTTGAAAAATAAACACACAAACAATTCACCTAAACTATGACTCTGAAAATTCTATACATTAGACAAGCGCAACACGTACCATTCGCAGAGAGGGTTTTTTTCTGTAGTGAGCCAATACGAAGTGCATAGGGGCTGCAATGATCTCACACACACACACATACACGAGCAGCACTTCCATACATGCACTAGGGAAACAATCAGTTTTGCAAAATTATGGTAGTACTTATGNGNAGCCGAAGCGAGCACTTACAGAATAAGTAAGTTGTGGTGCAACGGTGTGGCACTGTGATGTGCTAAAGAGGAAANAGCTTACTGNGGCAATGGAGCATGTAAGGAAGNAGGC] [+] EMBL BX468236 [AGGCAAGAATCCGCACGATTGTAATTACGATTTTATGTTAACNTAACGACAGACAGAAGAAAGAGAGTAAACTTTCTCCATGAGACTGCAATGGGAATTTGTTGAAAAATAAACACACAAACAATTCACCTAAACTATGACTCTGAAAATTCTATACATTAGACAAGCGCAACACGTACCATTCGCAGAGAGGGTTTTTTTCTGTAGTGAGCCAATACGAAGTGCATAGGGGCTGCAATGATCTCACACACACACACATACACGAGCAGCACTTCCATACATGCACTAGGGAAACAATCAGTTTTGCAAAATTATGGTAGTACTTATGNGNAGCCGAAGCGAGCACTTACAGAATAAGTAAGTTGTGGTGCAACGGTGTGGCACTGTGATGTGCTAAAGAGGAAANAGCTTACTGNGGCAATGGAGCATGTAAGGAAGNAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5810#0 CCGAGTCGATCCAACGCAAACGAAAAGATACAATTGCAAACCAATATTAGCCAATGTGAT 60 consensus_5810#1 ------------------------------------------------------------ consensus_5810#0 TATACAAAAAAAGAAAAAAAAACTCACCGTAATAGTTAACACACGGCGGTCCTTCGCATC 120 consensus_5810#1 ------------------------------------------------------------ consensus_5810#0 GCCGTGTGTATCGATGTGTGTATTGTTACTGTGTAAAGAGGTGAGTGTGAAGCGGGTGGT 180 consensus_5810#1 ------------------------------------------------------------ consensus_5810#0 GCTAAAACAAAACAAAAAACAAAAACAGAAAACAGAAACTAACTAACACATTAGTTCCCT 240 consensus_5810#1 ------------------------------------------------------------ consensus_5810#0 GCCACCTCCTTGTCATTAGACCGTTGTTAAACATATTACATGTTGAATTGAGGATGCAAT 300 consensus_5810#1 ------------------------------------------------------------ consensus_5810#0 TCCTGGATAGCTGCTATGCAGTCTTCATCCTAATGCAATGTTAGTTGAAGAAAACAAAGA 360 consensus_5810#1 ---AGGCAAGAATCCGCACGATTGTAATTACGATTTTATGTTAACNTAACGACAGACAGA 57 ** ** * * * * ** ** ****** ** * * * *** consensus_5810#0 AACAAGAAAGAAAACATTTGTCGTTTAGAAAAAAATACTAAAAAACACAAACACACATAC 420 consensus_5810#1 AGAAAGAGAGTAAAC-TTTCTCCATGAGACTGCAATGGGAATTTGTTGAAAAATAAACAC 116 * **** ** **** *** ** * *** *** ** *** * * * ** consensus_5810#0 ACACACAGTCACAATTCAAAAAAAGACGAATTGAAATTGAAGTAAAATAAATTAAAGCAA 480 consensus_5810#1 ACAAACAATTC--ACCTAAACTATGAC--TCTGAAAATTCTATACATTAGACAAGCGCAA 172 *** *** * * *** * *** ***** * ** * ** * * **** consensus_5810#0 AACAAAC-ATACACTCCAACTACAATATTCTGGATGTTGGATGTTACAGAAGTGATAAGT 539 consensus_5810#1 CACGTACCATTCGCAGAGAGGGTTTTTTTCTGTA-GTGAGCCAATACGAAGTGCATAGGG 231 ** ** ** * * * * ***** * ** * *** * *** * consensus_5810#0 GTAGTGCGATGAGTTTCCTTGATCTGACCATCAGGCGAGCATGTCTCAGTAGTATGGCTT 599 consensus_5810#1 GC--TGCAATGA-TCTCACACACACACACAT-ACACGAGCAGCACTTCCATACATG---- 283 * *** **** * ** * *** * ****** ** *** consensus_5810#0 TTTCCCGTTACTTAATTATTGCTTTCGGTAGGATTAAGAAGCTTATGTTCTTTTATATTA 659 consensus_5810#1 -CACTAGGGAAACAATCAGT-TTTGCAAAATTATGGTAGTACTTATGNGNAGCCGAA--G 339 * * * *** * * ** * * ** ****** * consensus_5810#0 CAAACATTTTTTCAACTAGCGCACAGTTGTATATGAAGTAAT-TGCAATTGTGTGTGTGT 718 consensus_5810#1 CGAGCACTTACAGAATAAGTA---AGTTGTG-GTGCAACGGTGTGGCACTGTG-ATGTGC 394 * * ** ** ** ** ****** ** * * ** * **** **** consensus_5810#0 TTCTTAAATTACGATTTTATGTTAACTAACGACAGACAGAAGAAAGAGAGTAAACTTTCT 778 consensus_5810#1 TAAAGAGGAAANAGCTTACTGNGG--CAATGGAGCATGTAAGGAAGNAGGC--------- 443 * * * ** ** ** * * *** *** * consensus_5810#0 CCATGAGACTGCAATGGGAATTTGTTTAAAAATAAACACACAAACAATTCACCTAAACTA 838 consensus_5810#1 ------------------------------------------------------------ consensus_5810#0 TGACTCTGAAAAT 851 consensus_5810#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||