These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 896 fasta sequence [CCGAGAAATTGTCCCACAATTACGAGAACCCCTGGAAAACCCTGTAAGTGTACAGTGACAGGGACAGTAAGTTTCTGTACCCAAGAACACGTAACTCTAAGCATATTGAGTGTTATTCGTTGTCCAGCCAGTAAGAACAACTTTAAAGTCAAGCGGCCTCAAACTCGGGTTTGCGCAGTGAGAATGTTTTTTTCGTTTTCTAGATGAGTGAATCTCGCCCTAATAATCTCAACCCTCGACCCACAAAAGTCAACGCTTAGTTTCATGCATATCTCATTCCATTCCGTTCCAAACCAAATGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGGGTAAGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTAGAAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATATTAATGGGCGCTCGCAGAAAAAAAAACAATTCGAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAAAAAAATATAAAGATTTCCACCCTAGACCTCCCGTTTTTTAATGGTTTCCCCAACGACGGGGCACTGGTTGGAAAGTATTACGACCTATGGAGGGGAGGGAA-GAGTAGAAAACGGAGCTAGAAACCTACAAAACAAAAAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGGGATAAATCATAGAAAACGGAACGGAAGATAGGAGAAACACAAAACTGGTTGATTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAGATTAAAAAAAAAAC] [+] EMBL BM611325 [CCGAGAAATTGTCCCACAATTACGAGAACCCCTGGAAAACCCTGTAAGTGTACAGTGACAGGGACAGTAAGTTTCTGTACCCAAGAACACGTAACTCTAAGCATATTGAGTGTTATTCGTTGTCCAGCCAGTAAGAACAACTTTAAAGTCAAGCGGCCTCAAACTCGGGTTTGCGCAGTGAGAATGTTTTTTTCGTTTTCTAGATGAGTGAATCTCGCCCTAATAATCTCAACCCTCGACCCACAAAAGTCAACGCTTAGTTTCATGCATATCTCATTCCATTCCGTTCCAAACCAAATGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGGGTAAGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTAGAAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATATTAATGGGCGCTCGCAGAAAAAAAAACAATTCGAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAAAAAAATATAAAGATTTCCACCCTAGACCTCCCGTTTTTTAATGGTTTCCCCAACGACGGGGCACTGGTTGGAAAGTATTACGACCTATGGAGGGGAGGGAA ] [+] EMBL BX618958 [ cAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAGTATAAAGATTTCCACCCCAAACCTCCCGTATTTTAATGGTTTCCCCAACGACGGGGCACT GTT GAAAGTATTACGACCTAT GAAGGGAGAAAAGGAGTAGAAAACGGAGCTAGAAACCTACAAAACAAAAAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGGGATAAATCATAGAAAACGGAACGGAAGATAGGAGAAACACAAAACTGGTTGATTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAGATTAAAAAAAAAAC] consensusID : consensus_5813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCGCTTTTTTTTTGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGCTCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAGTATAAAGATTTCCACCCCAAACCTCCCGTTTTTTTAATGGTTTCCCCAACGACGGGGTACTGTTGAAAGTATTACGACCTATGGAGGGAGAAAAGGAGTAGAAAACGGAGGAGCTAGAAACCTACGAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGGGATAAATCATAGAAAACGGAACGGGAGAAAGGAGAAACACAAAACTGGTTGATTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAGATAAAAAAAAAACAGAAGAAGAGAAAAAACGAACAAACACACAAACACCAAAAAGAAAATAACAAAACAAAAAACAATACGAATAAAACACACTGGAAAAGAAAACACTACTATGGA] [+] EMBL BM635183 [CCGCTTTTTTTTTGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGCTCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAGTATAAAGATTTCCACCCCAAACCTCCCGTTTTTTTAATGGTTTCCCCAACGACGGGGTACTGTTGAAAGTATTACGACCTATGGAGGGAGAAAAGGAGTAGAAAACGGAGGAGCTAGAAACCTACGAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGGGATAAATCATAGAAAACGGAACGGGAGAAAGGAGAAACACAAAACTGGTTGATTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAGATAAAAAAAAAACAGAAGAAGAGAAAAAACGAACAAACACACAAACACCAAAAAGAAAATAACAAAACAAAAAACAATACGAATAAAACACACTGGAAAAGAAAACACTACTATGGA] consensusID : consensus_5813#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGCAACATATGGAGTACACTTCCCATAAGAAAGAGTCAAGGAATTGTCAAACAACTATGAGAACACCTGGAAAATCCTGTAAATGTACAGTGACAGGGACAGTAAGTTTCTGTACCCAAGAACACGTAACTCTAAGCATATTGAGTGTTATTCGTTGTCCAGCCAGTAAGAACAACTTTAAAGTCAAGCGGCCCCAAACTCGGGTTTGCGCAGTGAGAATGTTTAATAACATTTTGTGTTTTCGTTTTCGTTTTCTAGATGAGTGAATCTCGCCCTAATAATCTCACCCTCGAAACCCACAAATGACAACGCTTAGTTTTATGCATATCTCATTCCATTCCGTTCCAAACCAAAAGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGAGTAAGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGTGCGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGCTCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAG] [+] EMBL BM619794 [CCGCAACATATGGAGTACACTTCCCATAAGAAAGAGTCAAGGAATTGTCAAACAACTATGAGAACACCTGGAAAATCCTGTAAATGTACAGTGACAGGGACAGTAAGTTTCTGTACCCAAGAACACGTAACTCTAAGCATATTGAGTGTTATTCGTTGTCCAGCCAGTAAGAACAACTTTAAAGTCAAGCGGCCCCAAACTCGGGTTTGCGCAGTGAGAATGTTTAATAACATTTTGTGTTTTCGTTTTCGTTTTCTAGATGAGTGAATCTCGCCCTAATAATCTCACCCTCGAAACCCACAAATGACAACGCTTAGTTTTATGCATATCTCATTCCATTCCGTTCCAAACCAAAAGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGAGTAAGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGTGCGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGCTCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5813#0 ------------------------------------CCGA-GAAATTGTCCCACAATTAC 23 consensus_5813#2 CCGCAACATATGGAGTACACTTCCCATAAGAAAGAGTCAA-GGAATTGTCAAACAACTAT 59 consensus_5813#1 ---------CCGCTTTTTTTTTGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAG 51 * * **** * ** consensus_5813#0 GAGAACCCCTGGAAAACCCTGTAAGTGTACAGTGACAGGGACAGTAAGTTTCTGTACCCA 83 consensus_5813#2 GAGAACACCTGGAAAATCCTGTAAATGTACAGTGACAGGGACAGTAAGTTTCTGTACCCA 119 consensus_5813#1 GTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTA 111 * * * * * * * * **** * * * ** ** * *** * consensus_5813#0 AGAACAC-GTAACTCTAAGC-ATATTGAGTGTTATTC-GTTGTCCAGCCAGTAAGAACAA 140 consensus_5813#2 AGAACAC-GTAACTCTAAGC-ATATTGAGTGTTATTC-GTTGTCCAGCCAGTAAGAACAA 176 consensus_5813#1 GGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGC 171 *** ** *** ** ** * ** ** * ***** * * * * * consensus_5813#0 CTTTAAAGTCAAGCGGCCTCAAACTCGGGT----TTGCGCAGTGAGAATGTTT------- 189 consensus_5813#2 CTTTAAAGTCAAGCGGCCCCAAACTCGGGT----TTGCGCAGTGAGAATGTTTAATAACA 232 consensus_5813#1 TCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATG 231 *** *** * *** * ** * ** * ** * consensus_5813#0 -------------TTTTCGTTTTCTAGATGAGTGAATC--TCGCCCTAATAATCTCAACC 234 consensus_5813#2 TTTTGTGTTTTCGTTTTCGTTTTCTAGATGAGTGAATC--TCGCCCTAATAATCTCA-CC 289 consensus_5813#1 AAATGAATAAAGTATAAAGATTTCCACCCCAAACCTCCCGTTTTTTTAATGGTTTCCCCA 291 * * **** * * * * **** * ** * consensus_5813#0 CTCGA--CCCACAAAAGTCAACGCTTAGTTTCATGCATATCTCATTCCATTCCGTTCCAA 292 consensus_5813#2 CTCGAAACCCACAAATGACAACGCTTAGTTTTATGCATATCTCATTCCATTCCGTTCCAA 349 consensus_5813#1 ACGACGGGGTACTGTTGAAAGTATTACGACCTATGGAGGGAGAAAAGGAGTAGAAAACGG 351 ** * * * * *** * * * * * consensus_5813#0 ACCA---AATGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGGGTAAG 349 consensus_5813#2 ACCA---AAAGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGAGTAAG 406 consensus_5813#1 AGGAGCTAGAAACCTACGAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCT 411 * * * ** ** * ** ** * * * * * *** ** ** * consensus_5813#0 ATCTTTGAGCGAGCGAACGTAATTTGGAA-GTTAGTAGGTGTGGCCGGATGATGTGCAAT 408 consensus_5813#2 ATCTTTGAGCGAGCGAACGTAATTTGGAA-GTTAGTAGGTGTGGCCGGATGATGTGCAAT 465 consensus_5813#1 GTAGATGGGATAAATCATAGAAAACGGAACGGGAGAAAGGAGAAACACAAAACTGGTTGA 471 * ** * * * ** **** * ** * * * * * * consensus_5813#0 TAGTAAGCAGTAAG--GGTGCATGTGTGTGTGTGTGAGTAGAAAAACCATAAATCCAAAC 466 consensus_5813#2 TAGTAAGCAGTAAG--GGTG--TGCGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAAC 521 consensus_5813#1 TTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGT 531 * *** **** * ** *** ** **** *** ** consensus_5813#0 GATGTTTGCCAGTGCCGAGTT----GTGTAATATTAATGGGCGCTCGCAGAAAAAAAAAC 522 consensus_5813#2 GATGTTTGCCAGTGCCGAGTT----GTGTAATAATAATGGGCGCTCGCA--AAAACAAAC 575 consensus_5813#1 AATAAAAGATAAAAAAAAAACAGAAGAAGAGAAAAAACGAACAAACACACAAACACCAAA 591 ** * * * * * * ** * * * ** ** * ** consensus_5813#0 AATTCGAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAAAAAAATA 582 consensus_5813#2 AATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAG-- 633 consensus_5813#1 AAGAAAATAACAAAACAAAAAACAATACGAATAAAACACACTGGAAAAGAAAACACTACT 651 ** * ** ** * * * *** ** * * ** ** * consensus_5813#0 TAAAGATTTCCACCCTAGACCTCCCGTTTTTTAATGGTTTCCCCAACGACGGGGCACTGG 642 consensus_5813#2 ------------------------------------------------------------ consensus_5813#1 ATGGA------------------------------------------------------- 656 consensus_5813#0 TTGGAAAGTATTACGACCTATGGAGGGGAGGGAAGAGTAGAAAACGGAGCTAGAAACCTA 702 consensus_5813#2 ------------------------------------------------------------ consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 CAAAACAAAAAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGG 762 consensus_5813#2 ------------------------------------------------------------ consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 GATAAATCATAGAAAACGGAACGGAAGATAGGAGAAACACAAAACTGGTTGATTATAATG 822 consensus_5813#2 ------------------------------------------------------------ consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 AGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAG 882 consensus_5813#2 ------------------------------------------------------------ consensus_5813#1 ------------------------------------------------------------ consensus_5813#0 ATTAAAAAAAAAAC 896 consensus_5813#2 -------------- consensus_5813#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||