These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5826#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 962 fasta sequence [CCGCAGAAGGGTGCGAAGCTCAAAAAGACGGTTACGGTCGACAAGAGCGCACCGGCCATTCAGGGCAAGGTTACTTCCGATGGAGGAGCGACGCGGGCGAACAATCGGGCACCTGGCCGGCCAACCGGCGACGATGGTGCGCCGGCGGCAGCAGGGCCGACAAACGGCGGTGGACAGCCGAAGCTGGGCGGCCTGTTCGAGGGGCTGTCATCGATGCCGAAATTGAAACCGGTCGGCAGCAGAACGGGAGCTGGCACAGGAAACGCACCTTCGGCAGCATCTGGGTATCAGCAGAACAAAACGCCCTCCCCGGACGCCTCGAAAGGGTCGCCGATTAACAATGGGCGGCTGGGGAATGGTGGCGGTTCCGCCGCCGCCCCGCTAGACTTCTCCGACGAGCTCGCGCAAAAGTTAACGCTCAAAAAACAGAAACAGCAGGGGAGCATCATCAGCAGCAGCAGCAGTAGTGGTAGCGTACCTCCCGCCATGAACCCTCCCCCAACCGTGCCGAACGAAGCGAACCTGCGACTGAACCGAGGACCACCACCGCAACCCCCAACATCGATCCAACGGCCATCCGGAGACAATTCGGCGTCAAAGACCGCACCGGCACCGCCCTCCTCCAGTCAGAAAAGCCAAGCACCTGCAACACCCAACCACCTGAAGCTGGCCGGATCGAAACCATCGTCAGCCACGAAGGACACATCTCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAA] [+] EMBL BM613650 [CCGCAGAAGGGTGCGAAGCTCAAAAAGACGGTTACGGTCGACAAGAGCGCACCGGCCATTCAGGGCAAGGTTACTTCCGATGGAGGAGCGACGCGGGCGAACAATCGGGCACCTGGCCGGCCAACCGGCGACGATGGTGCGCCGGCGGCAGCAGGGCCGACAAACGGCGGTGGACAGCCGAAGCTGGGCGGCCTGTTCGAGGGGCTGTCATCGATGCCGAAATTGAAACCGGTCGGCAGCAGAACGGGAGCTGGCACAGGAAACGCACCTTCGGCAGCATCTGGGTATCAGCAGAACAAAACGCCCTCCCCGGACGCCTCGAAAGGGTCGCCGATTAACAATGGGCGGCTGGGGAATGGTGGCGGTTCCGCCGCCGCCCCGCTAGACTTCTCCGACGAGCTCGCGCAAAAGTTAACGCTCAAAAAACAGAAACAGCAGGGGAGCATCATCAGCAGCAGCAGCAGTAGTGGTAGCGTACCTCCCGCCATGAACCCTCCCCCAACCGTGCCGAACGAAGCGAACCTGCGACTGAACCGAGGACCACCACCGCAACCCCCAACATCGATCCAACGGCCATCCGGAGACAATTCGGCGTCAAAGACCGCACCGGCACCGCCCTCCTCCAGTCAGAAAAGCCAAGCACCTGCAACACCCAAC ] [+] EMBL BX603571 [ cgAACGCTCAAAAAACAGAAACAGCAGGGTAG CATCAGCAACAACAGTAGTAGTGGTAGCGTACCTCCCGCCATGAACCCTCCCCCAACCGTGCCGAACGAAGCGAACCTGCGACTGAACCGAGGACCACCACCGCAACCCCCAACATCGATCCAACGGCCATCCGGAGACAATTCGGCGTCAAAGACCGCACCGGCACCGCCCTCCTCCAGTCAGAAAAGCCAAGCACCTGCAACACCCAACCACCTGAAGCTGGCCGGATCGAAACCATCGTCAGCCACGAAGGACACATCTCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAA] consensusID : consensus_5826#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 837 fasta sequence [CCGCGAAAGGTGGCAGCTTGAAAACGACTGCCGCCCCGCCGCTACCACCGCATCGGACCAGCCCCGCACCACCTCCACCAGTTCCGGCGTCGACGCTGAACTCGGGTGAAGCGCCCGTACCACCACAACGCATTTCGTCGATCCGCAATTCGGCCGGTAGCGGCGGCAGCTTACCAGCGGTACCCACTGTCGGCAGCGTCACCAGCAGCAGCAGCAGTCACAATCAGAGTCATCATAGTCAAAGCAGCACCGTCATTATCACGAGCACCTCCACATCAGCTGGTGGTGGTGGCGGCAGTTTGCACCGGAAGGACACATCGCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAAACGATCCAACCTAAAAGCGGGATGACGGATGTTGAACGATTGCCTGATGCTACCAAACAGCGCAGAACTGCATATCCGGTTGCAAAAACAGTATTTACGCGCAGACGAACGTCACGATGCACATTAGCATTCAGATGCACCCGTAACACACACACGCATGTGGCTGTTGAACATCAATGCGAAGAAGAGAAACAAATCGACACGTGATTATTAAGCTCAATTATTACGTTTGTAGTAGTACATTGCCGATTGATCGATCGAGC] [+] EMBL BM615809 [CCGCGAAAGGTGGCAGCTTGAAAACGACTGCCGCCCCGCCGCTACCACCGCATCGGACCAGCCCCGCACCACCTCCACCAGTTCCGGCGTCGACGCTGAACTCGGGTGAAGCGCCCGTACCACCACAACGCATTTCGTCGATCCGCAATTCGGCCGGTAGCGGCGGCAGCTTACCAGCGGTACCCACTGTCGGCAGCGTCACCAGCAGCAGCAGCAGTCACAATCAGAGTCATCATAGTCAAAGCAGCACCGTCATTATCACGAGCACCTCCACATCAGCTGGTGGTGGTGGCGGCAGTTTGCACCGGAAGGACACATCGCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAAACGATCCAACCTAAAAGCGGGATGACGGATGTTGAACGATTGCCTGATGCTACCAAACAGCGCAGAACTGCATATCCGGTTGCAAAAACAGTATTTACGCGCAGACGAACGTCACGA ] [+] EMBL BM655740 [ ccgGGCGGCAGCTTACCAGCGGTACCCACTGTCGGCAGCGTCACCAGCAGCAGCAGCAGTCACAATCAGAGTCATCATAGTCAAAGCAGCACCGTCATTATCACGAGCACCTCCACATCAGCTGGTGGTGGTGGCGGCAGTTTGCACCGGAAGGACACATCGCTAACGTCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATACCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAGCAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCACTGAGGGAAACGATCCAACCTAAAAGCGGGATGACGGATGTTGAACGATTGCCTGATGCTACCAAACAGCGCAGAACTGCATATCCGGTTGCAAAAACAGTATTTACGCGCAGACGAACGTCACGATGCACATTAGCATTCAGATGCACCCGTAACACACACACGCATGTGGCTGTTGAACATCAATGCGAAGAAGAGAAACAAATCGACACGTGATTATTAAGCTCAATTATTACGTTTGTAGTAGTACATTGCCGATTGATCGATCGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5826#0 CCGCAGAAGGGTGCGAAGCTCAAAAAGACGGTTACG--GTCGACAAGAGCGCACCGGCCA 58 consensus_5826#1 CCGC-GAAAGGTGGCAGCTTGAAAACGACTGCCGCCCCGCCGCTACCACCGCATCGGAC- 58 **** *** **** * * **** *** * * * ** * * **** *** * consensus_5826#0 TTCAGGGCAAGGTTACTTCCGATGGAGGAGCGACGCGGGCGAACAA-TCGGGCACCTGGC 117 consensus_5826#1 --CAGCCCCGCACCACCTCCACC--AGTTCCGGCGTCGACGCTGAACTCGGGTGAAGCGC 114 *** * ** *** ** ** ** * ** ** ***** ** consensus_5826#0 CGGCCAACCGGCGACGATGGTGCGCCGG-CGGCAGCAGGGCCGACAAACGGCGGTGGACA 176 consensus_5826#1 CCGTACCACCACAACG-CATTTCGTCGATCCGCAATTCGGCCGGTAG-CGGCGGCAGCTT 172 * * * * *** * ** ** * *** ***** * ****** * consensus_5826#0 GCCGAAGCTGGGCGGCCTGTTCGAGGGGCTGTCATCGAT-GCCGAAATTGAAACCGGTCG 235 consensus_5826#1 ACC--AGCGGTACCCACTGTCGGCAGCGTCACCAGCAGCAGCAGCAGTCACAATCAGA-G 229 ** *** * * **** * * * ** * ** * * * ** * * * consensus_5826#0 GCAGCAGAACGGGAGCTGGCACAGGAAACGCACCTTCGGCAGCATCTGGGTATCAGCAGA 295 consensus_5826#1 TCATCATAGTCAAAGC-AGCACCGT-----CATTATCACGAGCACCTCCACATCAGCTGG 283 ** ** * *** **** * ** ** **** ** ****** * consensus_5826#0 ACAAAACGCCCTCCCCGGACGCCTCGAAAGGGTCGCCGATTAACAATGGGCGGCTGGGGA 355 consensus_5826#1 TGGTGGTGGCGGCA--GTTTGCACCGGAAGGACACATCGCTAACGTCGGTCAGCAGCAGT 341 * * * * ** ** **** **** ** * ** * * consensus_5826#0 ATGGTGGCGGTTCCGCCGCCGCCCCGCTAGACTTCTCCGAC-GAGCTCGCGCAAAAGTTA 414 consensus_5826#1 TCGTCGGCGG---CGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATCGACCTGGAGGCG 398 * ***** ** ** * * * *** * * * * *** *** * ** consensus_5826#0 ACGCTCAAAAAACAGAAACAGCAGGGGAGCATCATCAGCAGCAGCAGCAGTAGTGGTAGC 474 consensus_5826#1 AAGTACGCGTTCTACTTCCACAAGGTGACCG-----AGTTTCCGCAGC-----CGATACC 448 * * * * ** *** ** * ** * ***** * ** * consensus_5826#0 GTACCTCCCGCCATGAACCCTCCCCCAACCGTGCCGAACGAAGCGAACCTGCGACTGAAC 534 consensus_5826#1 GTTCCT--------GAATGTGCCCAAAATCT-----ATCAAAGCGAAC-TGCGGCAGCAG 494 ** *** *** *** ** * * * ******** **** * * * consensus_5826#0 CGAGGACCACCACCGCAACCCCCAACATCGATCCAACGGCCATCCGGAGACAATTCGGCG 594 consensus_5826#1 CAGCAGCAGCAGCAGCAA-----GGTGTCGGAC-AACCGCCACC----GCCCCATCGGCA 544 * * * * **** *** * *** **** * * * ***** consensus_5826#0 TCAAAGACCGCACCGGCACCGCCCTCCTCCAGTCAGAAAAGCCAAGCACCTGCAACACCC 654 consensus_5826#1 GTAAAATTCGC----------CCTCCGGTCACTGAGGGAAACGATCCAACC-TAAAAGCG 593 *** *** ** * ** * ** ** * * ** * ** * * consensus_5826#0 AACCACCTGAAGCTGGCCGGATCGAAACCATCGTCAGCCACGAAGGACACATCTCTAACG 714 consensus_5826#1 GGATGACGGATGTTGAACGATT---GCCTGATGCTA-CCAAACAGCGCAGAACTGCATAT 649 * ** * ** ** * * * * *** ** ** * ** * consensus_5826#0 TCGGTCAGCAGCAGTTCGTCGGCGGCGGCGACCAGCAGTAAGATGCCCCTGCCAGAGATC 774 consensus_5826#1 CCGGTTGCAAAAACAGTATTTACG-CGCAGACGAACGTCACGATGCACAT---TAGCATT 705 **** * * * ** ** *** * * * ***** * * ** consensus_5826#0 GACCTGGAGGCGAAGTACGCGTTCTACTTCCACAAGGTGACCGAGTTTCCGCAGCCGATA 834 consensus_5826#1 CAGATGCACCCGTAACACAC-----ACACGCATGTGGCTGTTGAACATCAAT-GCGAAGA 759 * ** * ** * ** * ** ** ** ** ** ** * * consensus_5826#0 CCGTTCCTGAATGTGCCCAAAATCTATCAAAGCGAACTGCGGCAGCAGCAGCAGCAGCAG 894 consensus_5826#1 AGAGAAACAAATCGACACGTGAT-TATTAAGCTCAATTATTACGTTTGTAGTAGTA-CAT 817 *** * * ** *** ** ** * * * ** ** * ** consensus_5826#0 CAGCAAGGTGTCGGACAACCGCCACCGCCCCATCGGCAGTAAAATTCGCCCTCCGGTCAC 954 consensus_5826#1 TGCCGATTGATCGATCGAGC---------------------------------------- 837 * * *** * * * consensus_5826#0 TGAGGGAA 962 consensus_5826#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||