These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 976 fasta sequence [CCGTTTGCGAGGAAACCCGATTTCAAGTTAAAGGAAGCCGCTTTAGATCTTGCGTGAAAATGAACGTGAAACTTCGGGCTTTTTTTGTGCTATATTCAGGCTACAGACCATTTAATATTTATAAGAATATGGCTTATCATATACCAAAAGAAAGAATATAAATTAAATGCCTTTGCGTGTTATTCTCCGCTGATCATTATTTTTTCACCGTGAACAAAGCGGAAAATCCCAAGGGAATGCATTTAATTTATTATTTCAATATATTTCCGATTTTATAGAATGTCCTAGCTTTTGATGTACGAGAAGCCATATTCTGATTAATATGTATTGATATATATCAATAAAAACCCGAAGTGT-CACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGAAGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGGAGGTGTT-------ACTCATACATTATCTTCCAATGCGGTAAAACCATGGTAGTATAGC------AGCAGGTTTCTCACTTTAAACGTGGCTGTTGGCACACTTTCTTAGTAAAACTTGCACTGCAATTCGTCTCATTACACGTTTCAACTATTTCTGTAGCGGCTCTTGGAAATGTTACAGAAAATTCGTTATTAGAACAAAATATGACTTACAATTGACAATATGGAAATAAGATTTAAAAAACGGCTAGTAGATGTAAAGCTTGAGCTAGCTAGACAAATCATGTAATTGCATGCCCAATATGTTACGTAGCATGGCCGTGAGGCTCGAGAAATTGTGCCAGCTATCTGAAATTAAGAGACATACTACACTAAAACACGTGCTGTTACGTTCATGTCCCCGCTAACAGTAGCTATTCCATTTTCAGCACGTTGCAGTCAGTGCTGCAAAATGTCATGAGAATCACCATCGAAAACAATGAACATATCCGTGGTAGTTTG] [+] EMBL BM656403 [CCGTTTGCGAGGAAACCCGATTTCAAGTTAAAGGAAGCCGCTTTAGATCTTGCGTGAAAATGAACGTGAAACTTCGGGCTTTTTTTGTGCTATATTCAGGCTACAGACCATTTAATATTTATAAGAATATGGCTTATCATATACCAAAAGAAAGAATATAAATTAAATGCCTTTGCGTGTTATTCTCCGCTGATCATTATTTTTTCACCGTGAACAAAGCGGAAAATCCCAAGGGAATGCATTTAATTTATTATTTCAATATATTTTATATTTTATAGAATATATTAGCTTTTGATGTACGAAAAGCCATATTCTGATTAATATGTATTGATATATATCAATAAAAACCCGAAATGT CACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGAAGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGGAGGTGTTACTACGGACTCATACATTATCTTCCAATGCGGTAAAACCATGGTAGTATAGCTAGCATAGCAGGTTTTTCACTTTAAACGTGGCTGTTGGCACACTTTCTTAGTAAAACATGCACTGCAATTCGTCTCTTTACACGTTTCAACTATTTCTGTAGCGGCTCTTGGAATGGTTTCAGAAAATTCGTTGTTAGAACAAAATATGACTTACAATTGACAAT ] [+] EMBL BM620616 [ CCGATTTTATAGAATGTCCTAGCTTTTGATGTACGAGGGGCCATATTCTGATTAATATGTATTGATATATATCAATAAAGACCCGAAGTGT CACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGAAGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGGAGGTGTT ACTCATACATTATCTTCCAATGCGGTAAAACCATGGTAGTATAGC AGCAGGTTTCTCACTTTAAACGTGGCTGTTGGCACACTTTCTTAGTAAAACTTGCACTGCAATTCGTCTCATTACACGTTTCAACTATTTCTGTAGCGGCTCTTGGAAATGTTACAGAAAATTCGTTATTAGAACAAAATATGACTTACAATTGACAATATGGAAATAAGATTTAAAAAACGGCTAGTAGATGTAAAGCTTGAGCTAGCTAGACAAATCATGTAATTGCATGCCCAATATGTTACGTAGCATGGCCGTGAGGCTCGAGAAATTGTGCCAGCTATCTGAAATTAAGAGACATACTACACTAAAACACGTGCTGTTACGTTCATGTCCCCGCTAACAGTAGCTATTCCATTTTCAGCACGTTGCAGTCAGTGCTGCAAAATGTCATGAGAATCACCATCGAAAACAATGAACATATCCGTGGTAGTTTG] [+] EMBL BM617093 [ CCGATTTTATAGAATGTCCTAGCTTTTGATGTACGAGAAGCCATATTCTGATTAATATGTATTGATATATATCAATAAAAACCCGGGGGGTGCACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGAAGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGGAGGTGTT ACTCATACATTATCTTCCAATGCGGTAAAACCATGGTAGTATAGC AGCAGGTTTCTCACTTTAAACGTGGCTGTTGGCACACTTTCTTAGTAAAACTTGCACTGCAATTCGTCTCATTACACGTTTCAACTATTTCTGTAGCGGCTCTTGGAAATGTTACAGAAAATTCGTTATTAGAACAAAATATGACTTACAATTGACAATATGGAAATAAGATTTAAAAAACGGCTAGTAGATGTAAAGCTTGAGCTAGCTAGACAAATCATGTAATTGCATGCCCAATATGTTACGTAGCATGGCCGTGAGGCTCGAGAAATTGTGCCAGCTATCTGAAATTAAGAGACATACTACACTAAAACACGTGCTGTTACGTTCATGTCCCCGCTAACAGTAGCTATTC ] consensusID : consensus_5842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [ATGCCTGCCCTTTTNGTTNAAATTTTTGCTATATTCAGGTTACAAGACCATTTGATATTGATAGGAGTATGGCTTGTCATATACCAAAGAAAGGATATAAATTGAATGCATTTCCTTGTGATTCTCCGCCTATCATTATTATCATTATCACCGTGAACAAAGCAGGAAATCACAAGGGAATGCATTTGGTTTATTATGCCAATATATTTTGTTGTTTAAATAGTTGGAGGATAGAATGTCCTTTCTTTTGGTGTATGAGGGGCCGTATTCTGATTGATATTTATTGATAGATAGCAATAAAACCCGAAATGTCACTTTCAATTGCACTAAAGCTGTAACTCGGGCTTTAGAATGAAGCCAATTATTAGGCGTTTAATTTTAGGCATAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGAAGGTGTTACTACGGACTCATAGATTATCTTCCAATGCGGTAAAACCACGGTAGTACAGCTAGCACAGCAGGTTTCTCACTTTATACGTGGCTGTTGGCATACTTTCTTAGTAAAACTTGCGCTGCAATTGTCTCTTTACACGTTT] [+] EMBL BX466690 [ATGCCTGCCCTTTTNGTTNAAATTTTTGCTATATTCAGGTTACAAGACCATTTGATATTGATAGGAGTATGGCTTGTCATATACCAAAGAAAGGATATAAATTGAATGCATTTCCTTGTGATTCTCCGCCTATCATTATTATCATTATCACCGTGAACAAAGCAGGAAATCACAAGGGAATGCATTTGGTTTATTATGCCAATATATTTTGTTGTTTAAATAGTTGGAGGATAGAATGTCCTTTCTTTTGGTGTATGAGGGGCCGTATTCTGATTGATATTTATTGATAGATAGCAATAAAACCCGAAATGTCACTTTCAATTGCACTAAAGCTGTAACTCGGGCTTTAGAATGAAGCCAATTATTAGGCGTTTAATTTTAGGCATAGCGCGCTTTCCGGCTGACCAAAATGTGAGCGACAATAAGTATAATAATAGTGAAGGTGTTACTACGGACTCATAGATTATCTTCCAATGCGGTAAAACCACGGTAGTACAGCTAGCACAGCAGGTTTCTCACTTTATACGTGGCTGTTGGCATACTTTCTTAGTAAAACTTGCGCTGCAATTGTCTCTTTACACGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5842#0 CCGTTTGCGAGGAAACCCGATTTCAAGTTAAAGGAAGCCGCTTTAGATCTTGCGTGAAAA 60 consensus_5842#1 ------------------------------------------------------------ consensus_5842#0 TGAACGTGAAACTTCGGGCTTTTTTTGTGCTATATTCAGGCTACA-GACCATTTAATATT 119 consensus_5842#1 -ATGCCTGCCCTTTTNGTTNAAATTTTTGCTATATTCAGGTTACAAGACCATTTGATATT 59 * ** ** * *** ************* **** ******** ***** consensus_5842#0 TATAAGAATATGGCTTATCATATACCAAAAGAAAGAATATAAATTAAATGCCTTTGCGTG 179 consensus_5842#1 GATAGGAGTATGGCTTGTCATATACCAAA-GAAAGGATATAAATTGAATGCATTTCCTTG 118 *** ** ******** ************ ***** ********* ***** *** * ** consensus_5842#0 TTATTCTCCGCTGATCATTATT----TTTTCACCGTGAACAAAGCGGAAAATCCCAAGGG 235 consensus_5842#1 TGATTCTCCGCCTATCATTATTATCATTATCACCGTGAACAAAGCAGGAAATCACAAGGG 178 * ********* ********* ** **************** * ***** ****** consensus_5842#0 AATGCATTTAATTTATTATTTCAATATATTTCCGATTTTA-------------TAGAATG 282 consensus_5842#1 AATGCATTTGGTTTATTATGCCAATATATTTTGTTGTTTAAATAGTTGGAGGATAGAATG 238 ********* ******** ********** **** ******* consensus_5842#0 TCCTAGCTTTTGATGTACGAGAAGCCATATTCTGATTAATATGTATTGATATATATCAAT 342 consensus_5842#1 TCCTTTCTTTTGGTGTATGAGGGGCCGTATTCTGATTGATATTTATTGATAGATAGCAAT 298 **** ****** **** *** *** ********** **** ******** *** **** consensus_5842#0 AAAAACCCGAAGTGTCACTTTCAATTCCACTAAAGCTCTGTAACTCGGGCTTTAGAATGA 402 consensus_5842#1 AAAA-CCCGAAATGTCACTTTCAATTGCACTAAAGCT--GTAACTCGGGCTTTAGAATGA 355 **** ****** ************** ********** ********************* consensus_5842#0 AGCCAATTCTTAGTCGTTTAATTGTAGGCGTAGCGCGCTTTCCGGCTGACCAAAATGTGA 462 consensus_5842#1 AGCCAATTATTAGGCGTTTAATTTTAGGCATAGCGCGCTTTCCGGCTGACCAAAATGTGA 415 ******** **** ********* ***** ****************************** consensus_5842#0 GCGACAATAAGTATAATAATAGTGGAGGTGTTACT-------CATACATTATCTTCCAAT 515 consensus_5842#1 GCGACAATAAGTATAATAATAGTGAAGGTGTTACTACGGACTCATAGATTATCTTCCAAT 475 ************************ ********** **** ************* consensus_5842#0 GCGGTAAAACCATGGTAGTATAGC------AGCAGGTTTCTCACTTTAAACGTGGCTGTT 569 consensus_5842#1 GCGGTAAAACCACGGTAGTACAGCTAGCACAGCAGGTTTCTCACTTTATACGTGGCTGTT 535 ************ ******* *** ****************** *********** consensus_5842#0 GGCACACTTTCTTAGTAAAACTTGCACTGCAATTCGTCTCATTACACGTTTCAACTATTT 629 consensus_5842#1 GGCATACTTTCTTAGTAAAACTTGCGCTGCAATT-GTCTCTTTACACGTTT--------- 585 **** ******************** ******** ***** ********** consensus_5842#0 CTGTAGCGGCTCTTGGAAATGTTACAGAAAATTCGTTATTAGAACAAAATATGACTTACA 689 consensus_5842#1 ------------------------------------------------------------ consensus_5842#0 ATTGACAATATGGAAATAAGATTTAAAAAACGGCTAGTAGATGTAAAGCTTGAGCTAGCT 749 consensus_5842#1 ------------------------------------------------------------ consensus_5842#0 AGACAAATCATGTAATTGCATGCCCAATATGTTACGTAGCATGGCCGTGAGGCTCGAGAA 809 consensus_5842#1 ------------------------------------------------------------ consensus_5842#0 ATTGTGCCAGCTATCTGAAATTAAGAGACATACTACACTAAAACACGTGCTGTTACGTTC 869 consensus_5842#1 ------------------------------------------------------------ consensus_5842#0 ATGTCCCCGCTAACAGTAGCTATTCCATTTTCAGCACGTTGCAGTCAGTGCTGCAAAATG 929 consensus_5842#1 ------------------------------------------------------------ consensus_5842#0 TCATGAGAATCACCATCGAAAACAATGAACATATCCGTGGTAGTTTG 976 consensus_5842#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||