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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTCCGGGACGCACGTTTCATATGTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTGGGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGAAACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCTCAAGTCCGAATCAGCGGAAGCTGCCGATGAAGAAAATGCCAGTATAGAGCATACGATCGATGTGACAAGCCAGGAGGAGGAGGACAACACCGCAGCGGAGGAAGTGAGCACCGAGGAGACGGACACGGCTGCGGACGATGCTACGGAAGAGATAACTCCCTCGGAGGAGGTTCAGGAGCAGCTGTTCGCCGACACAACGGAGGATGAGGCGACGGACAATGTAGAAGCCTCAGAAGAGACCGATCAGGAGCCGGCCGAGGCTGCCGATTCCGAGGAGGGCGAAGAGGAGCAGACCGAGGATCAGGAAGAGAACGTCACGGAGGAAGCGGTACAATCGGAAGAGACGGCAGAACCGACCGTCTCGGAAGAAGCGGAACAGTCCGAGGAGGTGCCGGCAGAAACCGAGGAGTTGACCTCCGAGGAATCGGCCAACCAGGTGCTGGAGGACGCCACTGAAGAAGAGGAAG]
[+] EMBL BM631558 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCCGGGACGCACGTTTCATATGTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTGGGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGAAACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCTCAAGTCCGAATCAGCGGAAGCTGCCGATGAAGAAAATGCCAGTATAGAGCATACGATCGATGTGACAAGCCAGGAGGAGGAGGACAACACCGCAGCGGAGGAAGTGAGCACCGAGGAGACGGACACGGCTGCGGACGATGCTACGGAAGAGATAACTCCCTCGGAGGAGGTTCAGGAGCAGCTGTTCGCCGACACAACGGAGGATGAGGCGACGGACAATGTAGAAGCCTCAGAAGAGACCGATCAGGAGCCGGCCGAGGCTGCCGATTCCGAGGAGGGCGAAGAGGAGCAGACCGAGGATCAGGAAGAGAACGTCACGGAGGAAGCGGTACAATCGGAAGAGACGGCAGAACCGACCGTCTCGGAAGAAGCGGAACAGTCCGAGGAGGTGCCGGCAGAAACCGAGGAGTT ]
[+] EMBL BM628039 [ ccgCCGGGACGCACGTTTCATATGTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTGGGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGAAACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCTCAAGTCCGAATCAGCGGAAGCTGCCGATGAAGAAAATGCCAGTATAGAGCATACGATCGATGTGACAAGCCAGGAGGAGGAGGACAACACCGCAGCGGAGGAAGTGAGCACCGAGGAGACGGACACGGCTGCGGACGATGCTACGGAAGAGATAACTCCCTCGGAGGAGGTTCAGGAGCAGCTGTTCGCCGACACAACGGAGGATGAGGCGACGGACAATGTAGAAGCCTCAGAAGAGACCGATCAGGAGCCGGCCGAGGCTGCCGATTCCGAGGAGGGCGAAGAGGAGCAGACCGAGGATCAGGAAGAGAACGTCACGGAGGAAGCGGTACAATCGGAAGAGACGGCAGAACCGACCGTCTCGGAAGAAGCGGAACAGTCCGAGGAGGTGCCGGCAGAAACCGAGGAGTTGACCTCCGAGGAATCGGCCAACCAGGTGCTGGAGGACGCCACTGAAGAAGAGGAAG]
consensusID : consensus_5893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCGCGCACGTTTCATATGTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTGGGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGAAACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCTCAAGTCCGAATCAGCGGAAGCTGCCGATGAAGAAAATGCCAGTATAGAGCATACGATCGATGTGACAAGCCAGGAGCAGCTGTTCGCCGACACAACGGAGGATGAGGCGACGGACAATGTAGAAGCCTCGGAAGAGACCGAACAGGAGCCGGCCGAGGCTGCCGATTCCGAGGAGGGCGAAGAGGAGCAGACCGAGGATCAGGAAGAGAACGTCACCGAGGAAGCGGTTCAATCGGAAGAGACGGAACCGACCGTCTCGGAAGAAGCGGAACAGTCCGAAGAGGTGCCGGCAGAAACTGAGGAGTTGACCTCCGAGGAATCGGCCAACCAGGTGCTGGAAGACGCCACTGAAGAAGAGGAAGATGAAGAAGCTGCTGCTGAGGATGATGGCGAGCAGGACGAGGAGGAAGATGTAGCCACGGAGGAGGTGACTGAATCGACG]
[+] EMBL BM644985 [CCGCGCACGTTTCATATGTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTGGGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGAAACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCTCAAGTCCGAATCAGCGGAAGCTGCCGATGAAGAAAATGCCAGTATAGAGCATACGATCGATGTGACAAGCCAGGAGCAGCTGTTCGCCGACACAACGGAGGATGAGGCGACGGACAATGTAGAAGCCTCGGAAGAGACCGAACAGGAGCCGGCCGAGGCTGCCGATTCCGAGGAGGGCGAAGAGGAGCAGACCGAGGATCAGGAAGAGAACGTCACCGAGGAAGCGGTTCAATCGGAAGAGACGGAACCGACCGTCTCGGAAGAAGCGGAACAGTCCGAAGAGGTGCCGGCAGAAACTGAGGAGTTGACCTCCGAGGAATCGGCCAACCAGGTGCTGGAAGACGCCACTGAAGAAGAGGAAGATGAAGAAGCTGCTGCTGAGGATGATGGCGAGCAGGACGAGGAGGAAGATGTAGCCACGGAGGAGGTGACTGAATCGACG]
consensusID : consensus_5893#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[TCGAGGCAAGAATCGGCACGNNGTGATTCGAGCATCGTCCGGGACGCNACGTTTCATATGTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTGGGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGAAACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCTTCAAGTCCGAATCAGCGGAAGCTGCCGATGAAGGAAAATGCCAGTATAGAGCATACGGATCGATGTGACAAGCCAGGAGGAGGAGGACAACGACCGCAGCGGAGGAAAGTGAGCACCGAGGGAGACGGACACGGTCTGCGGACGATGCTACGGGAAGAGATAAACTCCCTCGGAGGAGGGTCCCAGGGAGNCACNGCTGGTATCGCCGGAAGCNNAGCAACGGGAGGGAATGAGGCCGACGGAACAANT]
[+] EMBL BX468893 [TCGAGGCAAGAATCGGCACGNNGTGATTCGAGCATCGTCCGGGACGCNACGTTTCATATGTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTGGGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGAAACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCTTCAAGTCCGAATCAGCGGAAGCTGCCGATGAAGGAAAATGCCAGTATAGAGCATACGGATCGATGTGACAAGCCAGGAGGAGGAGGACAACGACCGCAGCGGAGGAAAGTGAGCACCGAGGGAGACGGACACGGTCTGCGGACGATGCTACGGGAAGAGATAAACTCCCTCGGAGGAGGGTCCCAGGGAGNCACNGCTGGTATCGCCGGAAGCNNAGCAACGGGAGGGAATGAGGCCGACGGAACAANT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5893#0 -----------CCGCCCACGCGTCCGCCCACGCGTCCGGTCCGGGACGCACGTTTCATAT 49
consensus_5893#1 -------------------------------------------CCGCGCACGTTTCATAT 17
consensus_5893#2 TCGAGGCAAGAATCGGCACGNNGTGATTCGAGCATCGTCCGGGACGCN-ACGTTTCATAT 59
* ***********
consensus_5893#0 GTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTG 109
consensus_5893#1 GTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTG 77
consensus_5893#2 GTAAGTGGAATAAGGCTGAACCACAACGAAGTGAGCAACCATGCGACGACTTTCAGTGTG 119
************************************************************
consensus_5893#0 GGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGA 169
consensus_5893#1 GGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGA 137
consensus_5893#2 GGTCCTGTTGGGCCTAGCGCTGTTTACCCTAAGCACAGCGGGATTACAGGTGCAAGCGGA 179
************************************************************
consensus_5893#0 AACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCT-CAAGT 228
consensus_5893#1 AACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCT-CAAGT 196
consensus_5893#2 AACGCCCACCGAGTACGAATGCAGACCTTACATTGAGAAAGCAATTCAAGATCTTCAAGT 239
****************************************************** *****
consensus_5893#0 CCGAATCAGCGGAAGCTGCCGATGAAG-AAAATGCCAGTATAGAGCATACG-ATCGATGT 286
consensus_5893#1 CCGAATCAGCGGAAGCTGCCGATGAAG-AAAATGCCAGTATAGAGCATACG-ATCGATGT 254
consensus_5893#2 CCGAATCAGCGGAAGCTGCCGATGAAGGAAAATGCCAGTATAGAGCATACGGATCGATGT 299
*************************** *********************** ********
consensus_5893#0 GACAAGCCAGGAGGAGGAGGACAACACCGCAGCGGAGGAAGTGAGCACCGAGGAGACGGA 346
consensus_5893#1 GACAAGCCAGGAG----------------------------------------------- 267
consensus_5893#2 GACAAGCCAGGAGGAGG------------------------------------------- 316
*************
consensus_5893#0 CACGGCTGCGGACGATGCTACGGAAGAGATAACTCCCTCGGAGGAGGTTCAGGAGCAGCT 406
consensus_5893#1 -------------------------------------------------------CAGCT 272
consensus_5893#2 ------------------------------------------------------------
consensus_5893#0 GTTCGCCGACACAACGGAGGATGAGGCGACGGACAATGTAGAAGCCTCAGAAGAGACCGA 466
consensus_5893#1 GTTCGCCGACACAACGGAGGATGAGGCGACGGACAATGTAGAAGCCTCGGAAGAGACCGA 332
consensus_5893#2 ----------AGGACAACGACCGCAGCGGAGGAAAGTG----AGCACCGAGGGAGACGGA 362
* ** * * *** *** * ** *** * ***** **
consensus_5893#0 -TCAGGAGCCGGCCGAGGCTGCCGATTCCGAGGAGGGCGA--AGAGGAGCAGACCGAGGA 523
consensus_5893#1 -ACAGGAGCCGGCCGAGGCTGCCGATTCCGAGGAGGGCGA--AGAGGAGCAGACCGAGGA 389
consensus_5893#2 CACGGTCTGCGGACGATGCTACGGGAAGAGATAAACTCCCTCGGAGGAG-GGTCCCAGGG 421
* * *** *** *** * * ** * * ****** * ** ***
consensus_5893#0 TCAGGAAGAGAACGTCACGGAGGAAGCGGTACAATCGGAAGAGACGGCAGAACCGACCGT 583
consensus_5893#1 TCAGGAAGAGAACGTCACCGAGGAAGCGGTTCAATCGGAAGAGACGG---AACCGACCGT 446
consensus_5893#2 AGNCACNGCTGGTATCGCCG--GAAGCNNAGCAACGGGAGGGAATGA---GGCCGAC--- 473
* ** * * ***** *** *** * * * *****
consensus_5893#0 CTCGGAAGAAGCGGAACAGTCCGAGGAGGTGCCGGCAGAAACCGAGGAGTTGACCTCCGA 643
consensus_5893#1 CTCGGAAGAAGCGGAACAGTCCGAAGAGGTGCCGGCAGAAACTGAGGAGTTGACCTCCGA 506
consensus_5893#2 ---GGAACAANT------------------------------------------------ 482
**** **
consensus_5893#0 GGAATCGGCCAACCAGGTGCTGGAGGACGCCACTGAAGAAGAGGAAG------------- 690
consensus_5893#1 GGAATCGGCCAACCAGGTGCTGGAAGACGCCACTGAAGAAGAGGAAGATGAAGAAGCTGC 566
consensus_5893#2 ------------------------------------------------------------
consensus_5893#0 ------------------------------------------------------------
consensus_5893#1 TGCTGAGGATGATGGCGAGCAGGACGAGGAGGAAGATGTAGCCACGGAGGAGGTGACTGA 626
consensus_5893#2 ------------------------------------------------------------
consensus_5893#0 -------
consensus_5893#1 ATCGACG 633
consensus_5893#2 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||