These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1081 fasta sequence [CTCGACTATGGATTAGTTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCTTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGCGCTTCATTACACCGCTCAGTGCACATTCGAGATGGTGTGTGCTAGCTCCTTGAAAAGCGACATAACACACGATCCTCAAGCGCGCGAGGCTTGCGGAGCCATCGAGAAGATGTGCGCCATTATGAGTAGCCGTCTGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTGACGCAAAGGTACCGCGAGATGCAGAAGGTGAGGGCTACGTTGGGACGAGTGGTAAATCCGATTTTGTACGACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGNCGCCTCGGACCTTTCGTACGAAACCATTTCGGCTCAAACGTATCTCGAGCAGGTGATCAAAGAAACGATGCGAGTGTATCCTGTGGCTCCACTCATCGGACGGGAAACGATCGAGACGGTGAAGCTGGGTGATGTGATCGTCCCATCCGGGGTAACGCTGCTCATCAACATCCTTACCTTGCATCGCAACAAGGAGCTGTGGGGTGAGCGGGCGCATGTTTTCGATCCGGATCGATTCGATCCTGCACAGTACGATGCCAAGAAGCAACATCCCTTCAGCTACATTCCATTCGGTGGAGGGCCCCGAAACTGCATCGGCTATCGGTACGGGATGTTTGCCATGAAAATCATGGTAACGCAGGTACTTCGCAAATATCAAC] [+] EMBL BX624166 [CTCGACTATGGATTAGTTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCTTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGCGCTTCATTACACCGCTCAGTGCACATTCGAGATGGTGTGTGCTAGCTCCTTGAAAAGCGACATAACACACGATCCTCAAGCGCGCGAGGCTTGCGGAGCCATCGAGAAGATGTGCGCCATTATGAGTAGCCGTCTGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTGACGCAAAGGTACCGCGAGATGCAGAAGGTGAGGGCTACGTTGGGACGAGTGGTAAATCCGATTTTGTACGACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGNCGCCTCGGACC ] [+] EMBL BX620595 [ CGACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGCCGCCTCGGACCTTTCGTACGAAACCATTTCGGCTCAAACGTATCTCGAGCAGGTGATCAAAGAAACGATGCGAGTGTATCCTGTGGCTCCACTCATCGGACGGGAAACGATCGAGACGGTGAAGCTGGGTGATGTGATCGTCCCATCCGGGGTAACGCTGCTCATCAACATCCTTACCTTGCATCGCAACAAGGAGCTGTGGGGTGAGCGGGCGCATGTTTTCGATCCGGATCGATTCGATCCTGCACAGTACGATGCCAAGAAGCAACATCCCTTCAGCTACATTCCATTCGGTGGAGGGCCCCGAAACTGCATCGGCTATCGGTACGGGATGTTTGCCATGAAAATCATGGTAACGCAGGTACTTCGCAAATATCAAC] consensusID : consensus_5910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence [AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAGCAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTCTTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGTGATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGACGTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCAGGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGATGGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTGCGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAAAGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA] [+] EMBL BX624043 [AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAGCAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTCTTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGTGATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGACGTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCAGGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGATGGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTGCGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAAAGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA] [+] EMBL BX628727 [ TTGGAGCAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTCTTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGTGATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGACGTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCAGGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGATGGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTGCGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAAAGTGGAACGAGTGGTAAATCCGATTTTGTACg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5910#0 ------------------------------------------------------------ consensus_5910#1 AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAG 60 consensus_5910#0 ------------------------------------------------------------ consensus_5910#1 CAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTC 120 consensus_5910#0 ------------------------------------------------------------ consensus_5910#1 TTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGT 180 consensus_5910#0 ------------------------------------------------------------ consensus_5910#1 GATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGAC 240 consensus_5910#0 ------------------------------------------------------------ consensus_5910#1 GTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCA 300 consensus_5910#0 -------------------------------CTCGACTATGGATTAGTTTCGTCTCGCTA 29 consensus_5910#1 GGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTA 360 ************** ************* consensus_5910#0 TACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCTTTTAACCAACGCATCCTTAT 89 consensus_5910#1 TACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTAT 420 *************************************** ******************** consensus_5910#0 CAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGA 149 consensus_5910#1 CAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGA 480 ************************************************************ consensus_5910#0 GGCAGATCGTAGACAACCGTTCGATGCGCTTCATTACACCGCTCAGTGCACATTCGAGAT 209 consensus_5910#1 GGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGAT 540 ************************** ********************* * * ***** consensus_5910#0 GGTGTGTGCTAGCTCCTTGAAAAGCGACATAACACACGATCCTCAAGCGCGCGAGGCTTG 269 consensus_5910#1 GGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTG 600 *** * ********* * ** ******** ** ***** * ** ** ********* consensus_5910#0 CGGAGCCATCGAGAAGATGTGCGCCATTATGAGTAGCCGTCTGTTTAATGTGCTGCTTTA 329 consensus_5910#1 CGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTA 660 ** *** *** * ** ****** **** ************ ******************* consensus_5910#0 CAGTGACCTGCTGTTTACGTTGACGCAAAGGTACCGCGAGATGCAGAAGGTGAGGGCTAC 389 consensus_5910#1 CAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAA 720 ********************* ***** * ***** *** * ****** *** ** * consensus_5910#0 GTTGGGACGAGTGGTAAATCCGATTTTGTAC-GACAGACGAGAAAAAATATCCAAACAGC 448 consensus_5910#1 AGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA- 779 *** ************************* * *** **** *** * ***** ** consensus_5910#0 GATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTG 508 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 ATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACC 568 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 ATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTC 628 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 TGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCA 688 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 TCTACGGCAGTGNCGCCTCGGACCTTTCGTACGAAACCATTTCGGCTCAAACGTATCTCG 748 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 AGCAGGTGATCAAAGAAACGATGCGAGTGTATCCTGTGGCTCCACTCATCGGACGGGAAA 808 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 CGATCGAGACGGTGAAGCTGGGTGATGTGATCGTCCCATCCGGGGTAACGCTGCTCATCA 868 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 ACATCCTTACCTTGCATCGCAACAAGGAGCTGTGGGGTGAGCGGGCGCATGTTTTCGATC 928 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 CGGATCGATTCGATCCTGCACAGTACGATGCCAAGAAGCAACATCCCTTCAGCTACATTC 988 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 CATTCGGTGGAGGGCCCCGAAACTGCATCGGCTATCGGTACGGGATGTTTGCCATGAAAA 1048 consensus_5910#1 ------------------------------------------------------------ consensus_5910#0 TCATGGTAACGCAGGTACTTCGCAAATATCAAC 1081 consensus_5910#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||