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Anopheles gambiae
cluster # 5910 cluster # 5910       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5910#0 length = 1081 sequences # 2  
consensus_5910#1 length = 779 sequences # 2  

consensusID : consensus_5910#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1081
fasta sequence
                              [CTCGACTATGGATTAGTTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCTTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGCGCTTCATTACACCGCTCAGTGCACATTCGAGATGGTGTGTGCTAGCTCCTTGAAAAGCGACATAACACACGATCCTCAAGCGCGCGAGGCTTGCGGAGCCATCGAGAAGATGTGCGCCATTATGAGTAGCCGTCTGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTGACGCAAAGGTACCGCGAGATGCAGAAGGTGAGGGCTACGTTGGGACGAGTGGTAAATCCGATTTTGTACGACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGNCGCCTCGGACCTTTCGTACGAAACCATTTCGGCTCAAACGTATCTCGAGCAGGTGATCAAAGAAACGATGCGAGTGTATCCTGTGGCTCCACTCATCGGACGGGAAACGATCGAGACGGTGAAGCTGGGTGATGTGATCGTCCCATCCGGGGTAACGCTGCTCATCAACATCCTTACCTTGCATCGCAACAAGGAGCTGTGGGGTGAGCGGGCGCATGTTTTCGATCCGGATCGATTCGATCCTGCACAGTACGATGCCAAGAAGCAACATCCCTTCAGCTACATTCCATTCGGTGGAGGGCCCCGAAACTGCATCGGCTATCGGTACGGGATGTTTGCCATGAAAATCATGGTAACGCAGGTACTTCGCAAATATCAAC]

[+] EMBL BX624166             [CTCGACTATGGATTAGTTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCTTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGCGCTTCATTACACCGCTCAGTGCACATTCGAGATGGTGTGTGCTAGCTCCTTGAAAAGCGACATAACACACGATCCTCAAGCGCGCGAGGCTTGCGGAGCCATCGAGAAGATGTGCGCCATTATGAGTAGCCGTCTGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTGACGCAAAGGTACCGCGAGATGCAGAAGGTGAGGGCTACGTTGGGACGAGTGGTAAATCCGATTTTGTACGACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGNCGCCTCGGACC                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX620595             [                                                                                                                                                                                                                                                                                                                                                                                                                                   CGACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGCCGCCTCGGACCTTTCGTACGAAACCATTTCGGCTCAAACGTATCTCGAGCAGGTGATCAAAGAAACGATGCGAGTGTATCCTGTGGCTCCACTCATCGGACGGGAAACGATCGAGACGGTGAAGCTGGGTGATGTGATCGTCCCATCCGGGGTAACGCTGCTCATCAACATCCTTACCTTGCATCGCAACAAGGAGCTGTGGGGTGAGCGGGCGCATGTTTTCGATCCGGATCGATTCGATCCTGCACAGTACGATGCCAAGAAGCAACATCCCTTCAGCTACATTCCATTCGGTGGAGGGCCCCGAAACTGCATCGGCTATCGGTACGGGATGTTTGCCATGAAAATCATGGTAACGCAGGTACTTCGCAAATATCAAC]


>consensus_5910#0 CTCGACTATGGATTAGTTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTT AATCCTGCTTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCG GAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGCGCTT CATTACACCGCTCAGTGCACATTCGAGATGGTGTGTGCTAGCTCCTTGAAAAGCGACATA ACACACGATCCTCAAGCGCGCGAGGCTTGCGGAGCCATCGAGAAGATGTGCGCCATTATG AGTAGCCGTCTGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTGACGCAAAGG TACCGCGAGATGCAGAAGGTGAGGGCTACGTTGGGACGAGTGGTAAATCCGATTTTGTAC GACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAG CATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGA GACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAA ACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAG GAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGNCGCCTCGGACCTTTCGTAC GAAACCATTTCGGCTCAAACGTATCTCGAGCAGGTGATCAAAGAAACGATGCGAGTGTAT CCTGTGGCTCCACTCATCGGACGGGAAACGATCGAGACGGTGAAGCTGGGTGATGTGATC GTCCCATCCGGGGTAACGCTGCTCATCAACATCCTTACCTTGCATCGCAACAAGGAGCTG TGGGGTGAGCGGGCGCATGTTTTCGATCCGGATCGATTCGATCCTGCACAGTACGATGCC AAGAAGCAACATCCCTTCAGCTACATTCCATTCGGTGGAGGGCCCCGAAACTGCATCGGC TATCGGTACGGGATGTTTGCCATGAAAATCATGGTAACGCAGGTACTTCGCAAATATCAA C



consensusID : consensus_5910#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 779
fasta sequence
                              [AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAGCAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTCTTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGTGATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGACGTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCAGGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGATGGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTGCGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAAAGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA]

[+] EMBL BX624043             [AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAGCAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTCTTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGTGATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGACGTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCAGGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGATGGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTGCGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAAAGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA]
[+] EMBL BX628727             [                                                      TTGGAGCAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTCTTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGTGATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGACGTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCAGGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGATGGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTGCGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAAAGTGGAACGAGTGGTAAATCCGATTTTGTACg                           ]


>consensus_5910#1 AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAG CAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTC TTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGT GATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGAC GTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCA GGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTA TACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTAT CAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGA GGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGAT GGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTG CGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTA CAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAA AGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5910#0      ------------------------------------------------------------
consensus_5910#1      AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAG 60
                                                                                  

consensus_5910#0      ------------------------------------------------------------
consensus_5910#1      CAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTC 120
                                                                                  

consensus_5910#0      ------------------------------------------------------------
consensus_5910#1      TTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGT 180
                                                                                  

consensus_5910#0      ------------------------------------------------------------
consensus_5910#1      GATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGAC 240
                                                                                  

consensus_5910#0      ------------------------------------------------------------
consensus_5910#1      GTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCA 300
                                                                                  

consensus_5910#0      -------------------------------CTCGACTATGGATTAGTTTCGTCTCGCTA 29
consensus_5910#1      GGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTA 360
                                                     **************  *************

consensus_5910#0      TACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCTTTTAACCAACGCATCCTTAT 89
consensus_5910#1      TACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTAT 420
                      *************************************** ********************

consensus_5910#0      CAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGA 149
consensus_5910#1      CAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGA 480
                      ************************************************************

consensus_5910#0      GGCAGATCGTAGACAACCGTTCGATGCGCTTCATTACACCGCTCAGTGCACATTCGAGAT 209
consensus_5910#1      GGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGAT 540
                      **************************  ********************* *  * *****

consensus_5910#0      GGTGTGTGCTAGCTCCTTGAAAAGCGACATAACACACGATCCTCAAGCGCGCGAGGCTTG 269
consensus_5910#1      GGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTG 600
                      *** *  ********* * ** ******** **  ***** * **   ** *********

consensus_5910#0      CGGAGCCATCGAGAAGATGTGCGCCATTATGAGTAGCCGTCTGTTTAATGTGCTGCTTTA 329
consensus_5910#1      CGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTA 660
                      ** *** *** * ** ****** **** ************ *******************

consensus_5910#0      CAGTGACCTGCTGTTTACGTTGACGCAAAGGTACCGCGAGATGCAGAAGGTGAGGGCTAC 389
consensus_5910#1      CAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAA 720
                      ********************* ***** * *****  *** * ****** *** **  * 

consensus_5910#0      GTTGGGACGAGTGGTAAATCCGATTTTGTAC-GACAGACGAGAAAAAATATCCAAACAGC 448
consensus_5910#1      AGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA- 779
                        *** ************************* *  *** **** *** * ***** **  

consensus_5910#0      GATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTG 508
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      ATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACC 568
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      ATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTC 628
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      TGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCA 688
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      TCTACGGCAGTGNCGCCTCGGACCTTTCGTACGAAACCATTTCGGCTCAAACGTATCTCG 748
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      AGCAGGTGATCAAAGAAACGATGCGAGTGTATCCTGTGGCTCCACTCATCGGACGGGAAA 808
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      CGATCGAGACGGTGAAGCTGGGTGATGTGATCGTCCCATCCGGGGTAACGCTGCTCATCA 868
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      ACATCCTTACCTTGCATCGCAACAAGGAGCTGTGGGGTGAGCGGGCGCATGTTTTCGATC 928
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      CGGATCGATTCGATCCTGCACAGTACGATGCCAAGAAGCAACATCCCTTCAGCTACATTC 988
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      CATTCGGTGGAGGGCCCCGAAACTGCATCGGCTATCGGTACGGGATGTTTGCCATGAAAA 1048
consensus_5910#1      ------------------------------------------------------------
                                                                                  

consensus_5910#0      TCATGGTAACGCAGGTACTTCGCAAATATCAAC 1081
consensus_5910#1      ---------------------------------
                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)