These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence [CCGTCCAAGACGGAAAACCTTACGCCGGTGCTGGCCGGCAAACTGCTCTCCGCCCTGTACGATTACCGTCCGGAGCGGTCCGATTCGCGACAGATCATCGCCTGGCTGACGGTGCTGAAGGAGGGCCACCTGTTCCTGGCCAAGTACGATCTGGTGCTGTGCAGCACGGCGCTGCCAAAGTTCGTGCAAGTGTGCACGCAAGACTTCTGGTCCTCGGAAAAGCTGGACGTGGTGTCGGCCGCGTCCAATGCGCTCAAGGACATACTGTACGAGTGTGTGCAACCGTGCTGTGCCGACGAGGTCGAGGTGGAAAAACATCGTGCCTCGCTGGAGAAGTCACTGAAGTACATCATCGACGTCCTCTGCACGGCACCGTTCGGGCATGCCTCGAAGCAAGTGCTCATCATTTTGGCCATAGCGTTCGATACTACCGGGCGCTACTTCGGCGAGACGCTTGCACCCGCGCTGACGACACTCGGCGCGCGGTATGATCCACAGTCCTCCAACCGCATCCAGATCGAGCATGCCGTCCTGCAAGCCGTCGGTTCGATGGACACGCAGCTGGTGCTGAAGTGCATACCGCTTGCCGGTTCGGACGGGAAGATCGATCTGGACCGCACGTGGATGCTGCCGCTGCTGCGCGAAGGCCTGCAGCACTCCAGCCTCGAGCTGTTCAACAGCGTCATACTGAAGCTGGCCTACCAGTGCTACATGCTGTGG] [+] EMBL BM579967 [CCGTCCAAGACGGAAAACCTTACGCCGGTGCTGGCCGGCAAACTGCTCTCCGCCCTGTACGATTACCGTCCGGAGCGGTCCGATTCGCGACAGATCATCGCCTGGCTGACGGTGCTGAAGGAGGGCCACCTGTTCCTGGCCAAGTACGATCTGGTGCTGTGCAGCACGGCGCTGCCAAAGTTCGTGCAAGTGTGCACGCAAGACTTCTGGTCCTCGGAAAAGCTGGACGTGGTGTCGGCCGCGTCCAATGCGCTCAAGGACATACTGTACGAGTGTGTGCAACCGTGCTGTGCCGACGAGGTCGAGGTGGAAAAACATCGTGCCTCGCTGGAGAAGTCACTGAAGTACATCATCGACGTCCTCTGCACGGCACCGTTCGGGCATGCCTCGAAGCAAGTGCTCATCATTTTGGCCATAGCGTTCGATACTACCGGGCGCTACTTCGGCGAGACGCTTGCACCCGCGCTGACGACACTCGGCGCGCGGTATGATCCACAGTCCTCCAACCGCATCCAGATCGAGCATGCCGTCCTGCAAGCCGTCGGTTCGATGGACACGCAGCTGGTGCTGAAGTGCATACCGCTTGCCGGTTCGGACGGGAAGATCGATCTGGACCGCACGTGGATGCTGCCGCTGCTGCGCGAAGGCCTGCAGCACTCCAGCCTCGAGCTGTTCA ] [+] EMBL BM576897 [ ccgCGGCAAACTGCTCTCCGCCCTGTACGATTACCGTCCGGAGCGGTCCGATTCGCGACAGATCATCGCCTGGTTGACGGTGCTGAAGGAGGGCCACCTGTTCCTGGCCAAGTACGATCTGGTGCTGTGCAGCACGGCGCTGCCAAAGTTCGTGCAAGTGTGCACGCAAGACTTCTGGTCCTCGGAAAAGCTGGACGTGGTGTCGGCCGCGTCCAATGCGCTCAAGGACATACTGTACGAGTGTGTGCAACCGTGCTGTGCCGACGAGGTCGAGGTGGAAAAACATCGCGCCTCGCTGGAGAAGTCACTGAAGTACATCATCGACGTCCTCTGCACGGCACCGTTCGGGCATGCCTCGAAGCAAGTGCTCATCATTTTGGCCATAGCGTTCGATACTACCGGGCGCTACTTCGGAGAGACGCTTGCACCCGCGCTGACGACACTCGGCGCGCGGTATGATCCACAGTCCTCCAACCGCATCCAGATCGAGCATGCCGTCCTGCAAGCCGTCGGTTCGATGGACACGCAGCTGGTGCTGAAGTGCATACCGCTTGCCGGTTCGGACGGGAAGATCGATCTGGACCGCACGTGGATGCTGCCGCTGCTGCGTGAAGGCCTGCAGCACTCCAGCTTCGAGCTGTTCAACAGCGTCATACTGAAGCTGGCCTACCAGTGCTACATGCTGTGG] consensusID : consensus_5912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [CCGCCCACGCGTCCGCTTATTTACACGTGTTTCAGGATGGCCCCAGAGGAAACTAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCC] [+] EMBL BM610258 [CCGCCCACGCGTCCGCTTATTTACACGTGTTTCAGGATGGCCCCAGAGGAAACTAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCC] consensusID : consensus_5912#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 87 fasta sequence [CCCCGTCCGGCCTAGGGTCCGATCCGCCCGATCGTGCCCTGCCCGTCGCTTCGCTACACCACCTCGTTCCGTGCGGGTCGTGGCTTC] [+] EMBL CNS09R60 [CCCCGTCCGGCCTAGGGTCCGATCCGCCCGATCGTGCCCTGCCCGTCGCTTCGCTACACCACCTCGTTCCGTGCGGGTCGTGGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5912#0 CCGTCCAAGACGGAAAACCTTACGCCGGTGCTGGCCGGCAAACTGCTCTCCGCCCTGTAC 60 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 --------------------------------------CCGCCCACGCGTCCGCTTATTT 22 consensus_5912#0 GATTACCGTCCGGAGC--GGTCCGATTCGCGACAGATCATCGC-CTGGCTGACGGTGCTG 117 consensus_5912#2 ---CCCCGTCCGGCCTAGGGTCCGATCCGC--CCGATCGTGCC-CTGCCCGTCGCTTC-- 52 consensus_5912#1 ACACGTGTTTCAGGATGGCCCCAGAGGAAACTAAGGCCGCCGCTCCGGCCAAGGCTGTT- 81 * * * * ** * * * * * * * * consensus_5912#0 AAGGAGGGCCACCT-GTTCCTGGCCAAGTACGATCTGGTGCTGTGCAGCACGGCGCTGCC 176 consensus_5912#2 --GCTACACCACCTCGTTCCGTGCGGGTCGTGGCTTC----------------------- 87 consensus_5912#1 AAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCC-- 139 * ** * ** consensus_5912#0 AAAGTTCGTGCAAGTGTGCACGCAAGACTTCTGGTCCTCGGAAAAGCTGGACGTGGTGTC 236 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 ------------------------------------------------------------ consensus_5912#0 GGCCGCGTCCAATGCGCTCAAGGACATACTGTACGAGTGTGTGCAACCGTGCTGTGCCGA 296 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 ------------------------------------------------------------ consensus_5912#0 CGAGGTCGAGGTGGAAAAACATCGTGCCTCGCTGGAGAAGTCACTGAAGTACATCATCGA 356 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 ------------------------------------------------------------ consensus_5912#0 CGTCCTCTGCACGGCACCGTTCGGGCATGCCTCGAAGCAAGTGCTCATCATTTTGGCCAT 416 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 ------------------------------------------------------------ consensus_5912#0 AGCGTTCGATACTACCGGGCGCTACTTCGGCGAGACGCTTGCACCCGCGCTGACGACACT 476 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 ------------------------------------------------------------ consensus_5912#0 CGGCGCGCGGTATGATCCACAGTCCTCCAACCGCATCCAGATCGAGCATGCCGTCCTGCA 536 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 ------------------------------------------------------------ consensus_5912#0 AGCCGTCGGTTCGATGGACACGCAGCTGGTGCTGAAGTGCATACCGCTTGCCGGTTCGGA 596 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 ------------------------------------------------------------ consensus_5912#0 CGGGAAGATCGATCTGGACCGCACGTGGATGCTGCCGCTGCTGCGCGAAGGCCTGCAGCA 656 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 ------------------------------------------------------------ consensus_5912#0 CTCCAGCCTCGAGCTGTTCAACAGCGTCATACTGAAGCTGGCCTACCAGTGCTACATGCT 716 consensus_5912#2 ------------------------------------------------------------ consensus_5912#1 ------------------------------------------------------------ consensus_5912#0 GTGG 720 consensus_5912#2 ---- consensus_5912#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||