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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 921 fasta sequence
[CTCGAGCACTGTTGGCCCACTGGCTTTTTTTTTTCCGTTTCCTCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGTTGAAAGAATACCAGGTGATCGGGCGCAA-CTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCAG-TGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTGCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACCGGAAATACAGTTGGGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAAAGTTGAAACAAAAGGAGAGGTGAATAAAAGAAGGAGTATGGTGAAGATATACCGTATCGTCAAAAAAAAAAAAAAAAAAGGCCAAATGTGC]
[-] EMBL CNS09C9T [CTCGAGCACTGTTGGCCCACTGGCTTTTTTTTTTCCGTTTCCTCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGTTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCCAGTCGCGCTTTTGGTACTTCCTGCGTCAGCTGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTGCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACCGGAAATACAGTTGGGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAAAGTTGAAACAAAAGGAGAGGTGAATAAAAGAA ]
[+] EMBL CNS09C9S [ CGAA CGCAGTCAAGATGAAAGCTAAAGGAGTGTTGAAAGAATACCAGGTGATCGGGCGCAA CTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCAG TGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGT CTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTACTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACCGGAAATACAGTTGGGG CCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAAAGTTGAAACAAAAGGAGAGGTGAATAAAAGAAGGAGTATGGTGAAGATATACCGTATCGTCAAAAAAAAAAAAAAAAAAGGCCAAATGTGC]
[+] EMBL CNS09D5G [ AAAGAATACCAGGTGATCGGGCGCAA CTGCCCTCGGAGGAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCG CCCGGACCACATCGT GCCAAGTCGCGCTTCTGGTACTTCCTGCGTCAG TGCGTAAG TCAAGAAGGCAA CGGCGAGATCGT ]
consensusID : consensus_5913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[GTGTATCTCATTAACTGTGTTTGTGTTTGAATCTCCAATCTCCACTAATCATCATGGATTTCTATTACCTACCCGGATCTGCCCCGTGCCGTGCCGTCCAGATGACGGCGGCCGCCGTTGGCGTTGAGCTGAACCTGAAGCTCACCGACCTGATGAAGGGCGAGCACATGAAGCCGGAGTTCCTGAAGCTCAATCCTCAACACTGCATTCCAACGCTGGTCGACAATGGATTCGCCCTGTGGGAGTCGCGTGCCATTCAACGTTCCCCAGGCCTAGCGCCTATGAACTCATCGGTGGTCTAGCTCTTTCGCGTGCATTTGTTACAAGTTATCTATTGCGTTCCGCATTTCGACCGAATTCCGATACAACGCTATGGCGGGTGACGTGTAGGCCGACCAACCAATGGCCAGTTTTTGCGTGGCGTGAGGCGCATTTTTGGGATTATTCGGGAGTAGATATCAAGCTGGCGAGACAGTAAGGCGATGGGCGCCTAGCCTGGAACTTCTTTTCCGCAAAAGCCTAGGCATGGATTAGCGAATTTTATTGGGGCGTTGGGGGTGTTATGTCCGATAGGTTGAATTAGAAAAACGAGCGTAATAAACTTAT]
[+] EMBL BX612398 [GTGTATCTCATTAACTGTGTTTGTGTTTGAATCTCCAATCTCCACTAATCATCATGGATTTCTATTACCTACCCGGATCTGCCCCGTGCCGTGCCGTCCAGATGACGGCGGCCGCCGTTGGCGTTGAGCTGAACCTGAAGCTCACCGACCTGATGAAGGGCGAGCACATGAAGCCGGAGTTCCTGAAGCTCAATCCTCAACACTGCATTCCAACGCTGGTCGACAATGGATTCGCCCTGTGGGAGTCGCGTGCCATTCAACGTTCCCCAGGCCTAGCGCCTATGAACTCATCGGTGGTCTAGCTCTTTCGCGTGCATTTGTTACAAGTTATCTATTGCGTTCCGCATTTCGACCGAATTCCGATACAACGCTATGGCGGGTGACGTGTAGGCCGACCAACCAATGGCCAGTTTTTGCGTGGCGTGAGGCGCATTTTTGGGATTATTCGGGAGTAGATATCAAGCTGGCGAGACAGTAAGGCGATGGGCGCCTAGCCTGGAACTTCTTTTCCGCAAAAGCCTAGGCATGGATTAGCGAATTTTATTGGGGCGTTGGGGGTGTTATGTCCGATAGGTTGAATTAGAAAAACGAGCGTAATAAACTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5913#0 CTCGAGCACTGTTGGCCCACTGGCTTTTTTTTTTCCGTTTCCTCTTTAACGAAGCGCAGT 60
consensus_5913#1 ------------------------------------------------------------
consensus_5913#0 CAAGATGAAAGCTAAAGGAGTGTTGAAAGAATACCAGGTGATCGGGCGCAACTGCCCTCG 120
consensus_5913#1 ------------------------------------------------------------
consensus_5913#0 GAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTG 180
consensus_5913#1 ------------------------------------------------------------
consensus_5913#0 GCCAAGTCGCGCTTCTGGTACTTCCTGCGTCAGTGCGTAAGTTCAAGAAGGCAACCGGCG 240
consensus_5913#1 ------------------------------------------------------------
consensus_5913#0 AGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCA 300
consensus_5913#1 -----------------------------------------------GTGTATCTCATTA 13
* * ** *
consensus_5913#0 TCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACC 360
consensus_5913#1 ACTGTGT---TTGTGTTTGAATCTCCAATCTCCACTAATCATCATG-GATTTCTATTACC 69
*** * ** * ** **** * *** * * * ** * * * ***
consensus_5913#0 TGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCC 420
consensus_5913#1 TACCCGG-ATCTGCCCCGTGCCGTGCCGTCCAGATGACGGCGGCCGCCGTTGGCGT---T 125
* *** * * **** ** * **** * * **** ***
consensus_5913#0 GTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTG 480
consensus_5913#1 GAGCTGAACC--TGAAGCTCACCGACCTGA---TGAAGGGCGAGCACATGAAGC--CG-G 177
* ** * * * ** *** * * ** ** * ** * ** ** ** ** *
consensus_5913#0 CGCACATCAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGT 540
consensus_5913#1 AGTTCCTGAAGCTCAATCCTCAACACTGCATT--CCAACGCTGGTCGACAATGGATTCGC 235
* * * **** * * * * * * * * ** *** * *** * * *
consensus_5913#0 AAGGCGGGAGAAGCAGCGGCGCACGGCACTGTT-GGGAAGACTGTCATCATACGCATCGC 599
consensus_5913#1 CCTGTGGGAGTCGC-GTGCCATTCAACGTTCCCCAGGCCTAGCGCCTATGAACTCATCGG 294
* ***** ** * * * * * * ** * * * ** *****
consensus_5913#0 CGCCGCAGCGCCA-CGGATTCGTCCGC-ATCAGCCGC--GTTGTGTTC-GCGTTTGGAGT 654
consensus_5913#1 TGGTCTAGCTCTTTCGCGTGCATTTGTTACAAGTTATCTATTGCGTTCCGCATTTCGACC 354
* *** * ** * * * * * ** *** **** ** *** **
consensus_5913#0 GAGTGCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGC 714
consensus_5913#1 GAATTCCGATACAACGC---TATGG-CGGGTGACGT-GTAGGCCGACCAACCAATGGC-C 408
** * * * * * ** * * *** ** ** ** * * * ** *
consensus_5913#0 GGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTG---AAGTGTTAAT-TTGCACCGGA 770
consensus_5913#1 AGTTTTTGCGTGGCGTGAGGCGCATTTTTGGGATTATTCGGGAGTAGATATCAAGCTGGC 468
** * ** * * * *** * * ** * ** ** * * **
consensus_5913#0 AATACAGTTGGGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAA 830
consensus_5913#1 GAGACAGTAAGG---------CGATGGGCGCCTAGCCT---GGAACTTCTTTTCCGCAAA 516
* ***** ** * * * * * ** ** * ** **
consensus_5913#0 AGTTGAAACAAAAGGAGAGGTGAATAAAAGAAGGAGTATGGTGAAGATATACCGTATCG- 889
consensus_5913#1 AGCCTAGGCAT--GGATTAGCGAATTTTATTGGGGCGTTGGGGGTGTTATGTCCGATAGG 574
** * ** *** * **** * ** *** * * *** * ** *
consensus_5913#0 TCAAAAAAAAAAAAAAAAAAGGCCAAATGTGC 921
consensus_5913#1 TTGAATTAGAAAAACGAGCGTAATAAACTTAT 606
* ** * ***** * *** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||