These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [GAATCGCCCCGAGGTTTAAACTCTGACACACTTTCACAGCTAACAATCGTACATCAGCTTCTTGTCGTTCAAAGACACAGATGGTGTTTTTCATTTCAAATAGGAAACAAAAGAGAAAAATGCAACTCGCTTTGAGTTTCAAAGCGAAGGTAAAAAAAAATTAGAACAATCGAAGAAGTTCAGTTATAAAAACAAACACAAAAGATATAGCGCAAGAGTAGACAAAAGTATAAAGTACTAATTTAGGAAATGATGAGANNGGNACAAAAGAGAAATCGTCCAGAAAAACAACATGACTAGGAAGTTGAGACAACAGGAACGAAAATCGTAAAAATGATACAGAGCGTATATCGTGTACACTGAACACACAGACCACAAGCAGAGTTATTCATACATATTCGATTGTATATAGATNTGACCGTAGNCCTACGTAAGGTCATANCCCACTGATCCNNANNCTCTCACANTCATCATTGAGTTCTCCATCGTCGCACTGCTCGCANATAGTTCGAGTCATCTAGTACACTAGATNTNGGTATCGATTAAAATGGTNTGGATATATAGACTAGCGCCGCGTCTAAACGCCACANTTACACACAGCCAATAGGGANACANACAATGATAGGGTATCGGTTGTGTTCATGTAGGCAGCAAATTTATCGTTTTCTAACGTAATCCAANTAGNTAAACCAACTTCTTCACNNTCGCAGGACACTCACTC] [+] EMBL AL930576 [GAATCGCCCCGAGGTTTAAACTCTGACACACTTTCACAGCTAACAATCGTACATCAGCTTCTTGTCGTTCAAAGACACAGATGGTGTTTTTCATTTCAAATAGGAAACAAAAGAGAAAAATGCAACTCGCTTTGAGTTTCAAAGCGAAGGTAAAAAAAAATTAGAACAATCGAAGAAGTTCAGTTATAAAAACAAACACAAAAGATATAGCGCAAGAGTAGACAAAAGTATAAAGTACTAATTTAGGAAATGATGAGANNGGNACAAAAGAGAAATCGTCCAGAAAAACAACATGACTAGGAAGTTGAGACAACAGGAACGAAAATCGTAAAAATGATACAGAGCGTATATCGTGTACACTGAACACACAGACCACAAGCAGAGTTATTCATACATATTCGATTGTATATAGATNTGACCGTAGNCCTACGTAAGGTCATANCCCACTGATCCNNANNCTCTCACANTCATCATTGAGTTCTCCATCGTCGCACTGCTCGCANATAGTTCGAGTCATCTAGTACACTAGATNTNGGTATCGATTAAAATGGTNTGGATATATAGACTAGCGCCGCGTCTAAACGCCACANTTACACACAGCCAATAGGGANACANACAATGATAGGGTATCGGTTGTGTTCATGTAGGCAGCAAATTTATCGTTTTCTAACGTAATCCAANTAGNTAAACCAACTTCTTCACNNTCGCAGGACACTCACTC] consensusID : consensus_5919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [TTATTCCTTTCCACTGATGGTCCAAACATGTACATAGTTCCACAACGCTTCACTCCGCTAGAGTAATGAAGGAAACCAGCACAATCGCGTTGAATGAATGTAACCGCCTACTTCAGCTTCTTCTTCGGGCGCAGGTTGTTGGTGTGGCCACACTTCTTCTTGCGGCAGTTGGTCGCTCTCGGGTGCAGGCGTGCGTCCATTTGGCGGCAAATCATCTTGTCGCAGTTGTACTTTTGAGCCAAGAAACGCAGAGACGGGTACGGGCGAAGTCGAGCGGGTACACGAAGCAGAAGCGAGCGTGGCACCGGCGGCACCGCGGAATCCGAGGTTACCCAGGAAGTAGCGCCAGAACTGGGTGTTCTTGTCGAG] [+] EMBL CNS08UNL [TTATTCCTTTCCACTGATGGTCCAAACATGTACATAGTTCCACAACGCTTCACTCCGCTAGAGTAATGAAGGAAACCAGCACAATCGCGTTGAATGAATGTAACCGCCTACTTCAGCTTCTTCTTCGGGCGCAGGTTGTTGGTGTGGCCACACTTCTTCTTGCGGCAGTTGGTCGCTCTCGGGTGCAGGCGTGCGTCCATTTGGCGGCAAATCATCTTGTCGCAGTTGTACTTTTGAGCCAAGAAACGCAGAGACGGGTACGGGCGAAGTCGAGCGGGTACACGAAGCAGAAGCGAGCGTGGCACCGGCGGCACCGCGGAATCCGAGGTTACCCAGGAAGTAGCGCCAGAACTGGGTGTTCTTGTCGAG] consensusID : consensus_5919#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 132 fasta sequence [CGACCCACGCGTCCGGGAGATACTACACCGCGTGAGAGTAGTGGAATAGAGGAAGGAAGTGGCGAGGTTTATAAGCGGCTCCAATTAGAACAAACAAAAAAATATACTGGACCGGCGGGGGAGTGGACGGAC] [+] EMBL BM634894 [CGACCCACGCGTCCGGGAGATACTACACCGCGTGAGAGTAGTGGAATAGAGGAAGGAAGTGGCGAGGTTTATAAGCGGCTCCAATTAGAACAAACAAAAAAATATACTGGACCGGCGGGGGAGTGGACGGAC] [+] EMBL AGA282905 [ GAGATACTACACCGCGTGAGAGTAGTGGAATAGAGGAAGGAAGTGGCGAGGTTTATAAGCGGCTCCAATTAGAACAAAAACAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5919#0 GAATCGCCCCGAGGTTTAAACTCTGACACACTTTCACAGCTAACAATCGTACATCAGCTT 60 consensus_5919#2 ------------------------------------------------------------ consensus_5919#1 ------------------------------------------------------------ consensus_5919#0 CTTGTCGTTCAAAGACACAGATGGTGTTTTTCATTTCAAATAGGAAACAAAAGAGAAAAA 120 consensus_5919#2 ------------------------------------------------------------ consensus_5919#1 ------------------------------------------------------------ consensus_5919#0 TGCAACTCGCTTTGAGTTTCAAAGCGAAGGTAAAAAAAAATTAGAACAATCGAAGAAGTT 180 consensus_5919#2 ------------------------------------------------------------ consensus_5919#1 ------------------------------------------------------------ consensus_5919#0 CAGTTATAAAAACAAACACAAAAGATATAGCGCAAGAGTAGACAAAAGTATAAAGTACTA 240 consensus_5919#2 ------------------------------------------------------------ consensus_5919#1 ------------------------------------------------------------ consensus_5919#0 ATTTAGGAAATGATGAGANNGGNACAAAAGAGAAATCGTCCAGAAAAACAACATGACTAG 300 consensus_5919#2 ------------------------------------------------------------ consensus_5919#1 -------------------------------TTATTCCTTTCCACTGATGGTCCAAACAT 29 consensus_5919#0 GAAGTTGAGACAACAGGAACGAAAATCGTAAAAATGATACAGAGCGTATATCGTGTACAC 360 consensus_5919#2 ------------------------------------------------------------ consensus_5919#1 GTACATAGTTCCACAACGCTTCACTCCGCTAGAGTAATGAAGGAAACCAGCACAATCGCG 89 consensus_5919#0 TGAACACACAGACCACAAGCAGAGTTATTCATACATATTCGATTGTATATAGATNTGACC 420 consensus_5919#2 ------------------------------------------------------------ consensus_5919#1 TTGAATGAATGTAACCGCCTACTTCAGCTTCTTCTTCGGGCGCAGGTTGTTGGTGTGGCC 149 consensus_5919#0 GTAGNCCTACGTAAGGTCATANCCCACTGATCCNNANNCTCTCACANTCATCATTGAGTT 480 consensus_5919#2 ------------------------------------------------------------ consensus_5919#1 ACACTTCTTCTTGCGGCAGTTGGTCGCTCTCGGGTGCAGGCGTGCGTCCATTTGGCGGCA 209 consensus_5919#0 CTCCATCGTCGCACTGCT-CGCANATAGTTCGAGTCATCTAGTACACTAGATNTNGGTAT 539 consensus_5919#2 -------------CGACC-CACGC---GTCCGGGAGA--TACTACACCGCGTGAGAGTA- 40 consensus_5919#1 AATCATCTTGTCGCAGTTGTACTTTTGAGCCAAGAAA--CGCAGAGACGGGTACGGGCG- 266 * * * * * * * consensus_5919#0 CGATTAAAATGGTNTGGATATATAGACTAGCGCCGCGTCTAAACG-CCACANTTACACAC 598 consensus_5919#2 --------GTGGAATAGAGGAAGGAAGTGGCGAGGTTTATAAGCGGCTCCAATTAGAACA 92 consensus_5919#1 ------AAGTCGAGCGGGTACACGAAGCAGAAGCGAGCGTG-GCACCGGCGGCACCGCGG 319 * * * * * * * * * * * consensus_5919#0 AGCCAATAGGGANACANACAATGATAG-GGTATCGGTTGTGTTCATGTAGGCAGCAAATT 657 consensus_5919#2 AACAAAAAAATATACTGG-ACCGGCGG-GGGAGTGGACGGAC------------------ 132 consensus_5919#1 AATCCGAGGTTACCCAGGAAGTAGCGCCAGAACTGGGTGTTCTTGTCGAG---------- 369 * * * * * * ** * consensus_5919#0 TATCGTTTTCTAACGTAATCCAANTAGNTAAACCAACTTCTTCACNNTCGCAGGACACTC 717 consensus_5919#2 ------------------------------------------------------------ consensus_5919#1 ------------------------------------------------------------ consensus_5919#0 ACTC 721 consensus_5919#2 ---- consensus_5919#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||