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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence
[ACGGTCGACAGGCAGCGCGTGAAAAAGAGTGCAGTTGAAGTGCAGTTTAACCCACGTAGTCTTAGAAAAGTGCTAGTTTCTACCGAAAATGCGTACGCTAGCGGTTTTGTTTGCCGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAAGGATTCAAAGACGATTCGTGGCAAAAGACCTGGGTTCCATAGCGTGTTCCTATGGAATGCGGCAACCGGAGGGAGAAGAGGAGAGTTGTAGTAAACGGAAGAACAAATCGACTGCCACAGAGACAAAGCGAGATGAGCTGGAGACGAGACTAAAACAAACGTACGAACAATGAGGACTAAACGCAGTAGCATTTCACTTACAACAGCAGACGAGAGGAAATGGTAGAAGAGAACGCCTAGGAGAACACAAGTCAAGCAATCTGGTTTAGATAGCAGATAACGTCCAGAGAGAAGC-AACGGACTGATGAGGATAAACACAAGGTACACTTGAGAAATGTGGCAGCAGCACTCCCTCAACTGCAGGAATATCATCTCGATGAAGATATCCTCTTACTATGCGAGGCTCTGGATTGAAGACACGTGTGGTTATGGTTGTGTCCTGGCTACCTATGATTTACAACATTTTCCGGTGTTCCACTGTACAGTATGAACGCCCCTTTATAGTTACTCGCCTGTTTTTGACTATTTTCAAGTAGTTGTTTGGATGTGGGCGTA]
[+] EMBL CNS08HLO [ACGGTCGACAGGCAGCGCGTGAAAAAGAGTGCAGTTGAAGTGCAGTTTAACCCACGTAGTCTTAGAAAAGTGCTAGTTTCTACCGAAAATGCGTACGCTAGCGGTTTTGTTTGCCGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAAGGATTCAAAGACGATTCGTGGCAAAAGACCTGGGTTCCATAGCGTGTTCCTATGGAATGCGGCAACCGGAGGGAGAAGAGGAGAGTTGTAGTAAACGGAAGAACAAATCGACTGCCACAGAGACAAAGCGAGATGAGCTGGAGACGAGACTAAAACAAACGTACGAACAATGAGGACTAAACGCAGTAGCATTTCACTTACAACAGCAGACGAGAGGAAATGGTAGAAGAGAACGCCTAGGAGAACACAAGTCAAGCAATCTGGTTTAGATAGCAGATAACGTCCAGAGAGAAGC AACGGACTGATGAGGATAAACACAAGGTACACTTGAGAAATGTGGCAGCAGCACTCCCTCAACTGCAGGAATATCATCTCGATGAAGATATCCTCTTACTATGCGAGGCTCTGGATTGAAGACACGTGTGGTTATGGTTGTGTCCTGGCTACCTATGATTTACAACATTTTCCGGTGTTCCACTGTACAGTATGAACGCCCCTTTATAGTTACTCGCCTGTTTTTGACTATTTTCAAGTAGTTGTTTGGATGTGGGCGTA]
[+] EMBL CNS08VK9 [ TGAAAAAGAGTGCAGTTGAAGTGCAGTTTAACCCACGTAGTCGTAGAAAAGTGCTAGTTTCTACCGAAAATGCGTACGCTAGCGGTTTTGTTTGCCGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAAGGATTCAAAGACGATTCGTGGCAAAAGACCTGGGTTCCATAGCGTGTTCCTATGGAATGCGGCAACCGGAGGGAGAAGAGGAGAGTTGTAGTAAACGGAAGAACAAATCGACTGCCACAGAGACAAAGCGAGACGAGCTGGAGACGAGACTAAAACAAACGTACGAACAATGAGGACTAAACGCAGTAGCATTTCACTTACAACAGCAGACGAGAGGAAATGGTAGAAGAGAACGCCTAGGAGAACACAAGTCAAGCAATCTGGTTTAGATAGCAGATAACGTTTTGAGAGAAGCAAACGGACTGATGAGGATAAACACAAGGTACACTTGAGAAATGTGGCAGCAGCACTCCCTCAACTGCAGGAATATCATCTCGATGAAGATATCCTCTTACTATGCGAGGCTCTGGATTGAAGACACGTGTGGTTATGGTTGTGTCCTGGCTACCTATGATTTACAACATTTTCCGGTGTTCCACTGTACAGTATGAACGCCCCTTTATAGTGACTCGCCTGT ]
consensusID : consensus_5925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CCGACTCCGGAAGGTGAATTTAAACGTGGAGGAGTTCGTGCAACCGCAGGGGCTCGTCTGGGTTGGAGTGGAACGACTCCATATCGAAAACCTGATAAACCGTTCCGCGAATGGGATGTAGATACAATCTGCCATTGGTTCGAGCATCTGGGTTTAAATATGTATGAGGAAGATTTACGAAAGTGGATCAAATCGAGCACGACGCCTGGAAGCGAATTGATGAAAGCCTCGCCAGTAGATATTGAAAAAGAGTTAAGTTTGCGAAATCCATTGCATCGAAAAAAGATAGTGTTAGCTATTGCAGATATTTCGGGGACGGTGGGAGACGACGGGTTGTTTGAGAACGCTGGAAAGCTGGATTCAACATGGGTCCAGCGTTGGTTAGACGATATTGGTTTGCCCCAATACAAAGAACCCTTCATGGCGGCCCGAATGGATGGACGAATGCTACACAAATTGACGATGGACGATTTGGGCCATTTGCAAATATCTTCTTGTTTGCACGTGGCCAGCATTCGTCGTGGTATACAGCTTATGCGTAATGAAAAATGGAATCCCGATTGTCATATTCGTCGGCCATTGCAACTCGGATTAAATGCAAAAGACGATGTAAGGTTATGGACTTCGCAAAGAGTCCATGAATGGTTACGAGCCG]
[+] EMBL BM653989 [CCGACTCCGGAAGGTGAATTTAAACGTGGAGGAGTTCGTGCAACCGCAGGGGCTCGTCTGGGTTGGAGTGGAACGACTCCATATCGAAAACCTGATAAACCGTTCCGCGAATGGGATGTAGATACAATCTGCCATTGGTTCGAGCATCTGGGTTTAAATATGTATGAGGAAGATTTACGAAAGTGGATCAAATCGAGCACGACGCCTGGAAGCGAATTGATGAAAGCCTCGCCAGTAGATATTGAAAAAGAGTTAAGTTTGCGAAATCCATTGCATCGAAAAAAGATAGTGTTAGCTATTGCAGATATTTCGGGGACGGTGGGAGACGACGGGTTGTTTGAGAACGCTGGAAAGCTGGATTCAACATGGGTCCAGCGTTGGTTAGACGATATTGGTTTGCCCCAATACAAAGAACCCTTCATGGCGGCCCGAATGGATGGACGAATGCTACACAAATTGACGATGGACGATTTGGGCCATTTGCAAATATCTTCTTGTTTGCACGTGGCCAGCATTCGTCGTGGTATACAGCTTATGCGTAATGAAAAATGGAATCCCGATTGTCATATTCGTCGGCCATTGCAACTCGGATTAAATGCAAAAGACGATGTAAGGTTATGGACTTCGCAAAGAGTCCATGAATGGTTACGAGCCG]
consensusID : consensus_5925#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[ATTCCCCGAGGTTTGAGAACTGGTGGAGACACTTTCACTCGCCCAGNAAACGCCTTACCGTTTCTCGAAAGTCCCGTTGAGGGTGGGCGAACCAGCTGAGCAGTTCTCGGTAGTAATATAAAGGGTTCTCTCTTGGGTCGTTCCTCGCGTGCCTCTTGAAAAGCAGTGGCCCTTTGCACAGCCCAAAGAAAGAATGGAAGGTGTACCGGCGACCGGCGAGCCTGCGTGAAGTGACAAAGATCACTCGGACGAACCCTAAACAAATATCATTAACAGCAAGAACGGTTTGGCAAAGCAAATTCCAAGCAAAAATCACACCCTCCCATAGGAATCACATTTAAAGAGCATAAACAGTACTCCCCCTAAACAAAAAAAAAAACAGAAGAAATAAACAACAACAAAGAAATGTGANANGATAAAAGGAAGCTATAAGTACCGAGAATAGTAGACAAAACAAAACAAAAACACGCAAATGTGTCAGCGATATAATGGCCGATGTGTAGAACGAACGAGACGCCATGTGCTGTTAACACTACAGTGTCCCCGTACACACGTGTAGAGAATCGCAATGGACANAAAGCTTGAAAAACAAAAGTGTNAGTAGGTGTAACACATGANNACACAAGAAGCAACACAAGG]
[+] EMBL AL692205 [ATTCCCCGAGGTTTGAGAACTGGTGGAGACACTTTCACTCGCCCAGNAAACGCCTTACCGTTTCTCGAAAGTCCCGTTGAGGGTGGGCGAACCAGCTGAGCAGTTCTCGGTAGTAATATAAAGGGTTCTCTCTTGGGTCGTTCCTCGCGTGCCTCTTGAAAAGCAGTGGCCCTTTGCACAGCCCAAAGAAAGAATGGAAGGTGTACCGGCGACCGGCGAGCCTGCGTGAAGTGACAAAGATCACTCGGACGAACCCTAAACAAATATCATTAACAGCAAGAACGGTTTGGCAAAGCAAATTCCAAGCAAAAATCACACCCTCCCATAGGAATCACATTTAAAGAGCATAAACAGTACTCCCCCTAAACAAAAAAAAAAACAGAAGAAATAAACAACAACAAAGAAATGTGANANGATAAAAGGAAGCTATAAGTACCGAGAATAGTAGACAAAACAAAACAAAAACACGCAAATGTGTCAGCGATATAATGGCCGATGTGTAGAACGAACGAGACGCCATGTGCTGTTAACACTACAGTGTCCCCGTACACACGTGTAGAGAATCGCAATGGACANAAAGCTTGAAAAACAAAAGTGTNAGTAGGTGTAACACATGANNACACAAGAAGCAACACAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5925#0 -------------------ACGGTCGACAGGCAGCGCGTGAAA----AAGAGTGCAGTTG 37
consensus_5925#1 CCGACTCCGGAAGGTGAATTTAAACGTGGAGGAGTTCGTGCAACCGCAGGGGCTCGTCTG 60
consensus_5925#2 -----------ATTCCCCGAGGTTTGAGAACTGGTGGAGACACTTTCACTCGCCCAGNAA 49
* * * * * *
consensus_5925#0 AAG---TGCAGTTTAACCCACGTAGTCTTAGAAAAGTGCTAGTTTCTACCGAAAATGCGT 94
consensus_5925#1 GGT---TGGAGTGGAACG-ACTCCATATCGAAAACCTGATAAACCGTTCCGCGAATGGGA 116
consensus_5925#2 ACGCCTTACCGTTTCTCGAAAGTCCCGTTGAGGGTGGGCGAACCAGCTGAGCAGTTCTCG 109
* ** * * * * * * *
consensus_5925#0 ACGCTAGCGGTTTTGTTTGCCGCCTTTCTGGCCGTTAACGCCAAGGTGTACTTTGAAGAA 154
consensus_5925#1 ----TGTAGATACAATCTGCCATTGGTTCGAGCATCTGGGTTTAAATATG-TATGAGGAA 171
consensus_5925#2 G---TAGTAATATAAAGGGTTCTCTCTTGGGTCGTTC---CTCGCGTGCCTCTTGAAAAG 163
* * * * * * * * *** *
consensus_5925#0 GGATT-CAAAGACGATTCGTGGCAAAAGACCTGGGTTCCATAGCGTGTTCCTATGGAATG 213
consensus_5925#1 GATTTACGAAAGTGGATCAAATCG--AGCACGACGCCTGGAAGCGAATTGAT---GAAAG 226
consensus_5925#2 CAGT----GGCCCTTTGCACAGCCC-AAAGAAAGAATGGAAGGTGTACCGGCGACCGGCG 218
* * * * * * *
consensus_5925#0 CGGCAACCGGAGGGAGAAGAGGAGAGTTGTAGTAAACGGAAGAACAAATCGACTGCCACA 273
consensus_5925#1 CCTCGCCAGTAGATATTGAAAAAGAGTTA-AGTTTGCG-------AAATCCATTGC-ATC 277
consensus_5925#2 AGCCTGCGTGAAGTGACAAAGATCACTCGGACGAACC-------CTAAACAAATATCATT 271
* * * * * * * * ** * * * *
consensus_5925#0 GAGACAAAGCGAGATGAGCTGGAGACGAGACTAA--AACAAACGTACGA-ACAATGAG-- 328
consensus_5925#1 GAAAAAAGATAGTGTTAGCTATTGCAGATATTTC--GGGGACGGTGGGAGACGACGGGTT 335
consensus_5925#2 AACAGCAAGAACGGTTTGGCAAAGCAAATTCCAAGCAAAAATCACACCCTCCCATAGG-- 329
* * * * * * * * * * *
consensus_5925#0 GACTAAACGCAGTAGCATTTCACTTACAACAGCAGACGAGAGGAAATGGTAGAAGAGAAC 388
consensus_5925#1 GTTTGAGAACGCTGGAAAGCTGGATTCAACATGGGTCCAGCGTTGGT--TAGACGATATT 393
consensus_5925#2 ----AATCACATTTAAAGAGCATAAACAGTACTCCCCCTAAACAAAAAAAAAAACAGAAG 385
* * * * ** * * * * * *
consensus_5925#0 GCCTAGGAGAACACAAGTCAAGCAATCTGGTTTAGATAGCAGATAACGTCCAGAGAGAAG 448
consensus_5925#1 GGTTTG----CCCCAATACAAAGAACCC--TTCA---------TGGCGGCCCGAATGGAT 438
consensus_5925#2 AAATAA----ACAACAACAAAGAAATGTGANANG--------ATAAAAGGAAGCTATAAG 433
* * * ** ** * * *
consensus_5925#0 CAACGGACTGATGAGGATAAACACAAGGTACACTTGAGAAATGTGGCAGCAGCACTCCCT 508
consensus_5925#1 GGACGAA-TGCTACACAAATTGACGATGGACGATTTGGGCCATTTGCA--AATATCTTCT 495
consensus_5925#2 TACCGAG-AATAGTAGACAAAACAAAACAAAAACACGCAAATGTGTCAGCGATATAA--T 490
** * * * * * ** * *
consensus_5925#0 CAACTGCAGGAATATCATCTCGATGAAGATATCCTCTTACTATGCGAGGCTCTGGATTGA 568
consensus_5925#1 TGTTTGCACGTGGCCAGCATTCGTCGTGGTATACAGCT--TATGCGTAA-TGAAAAATGG 552
consensus_5925#2 GGCCGATGTGTAGAACGAACGAGACGCCATGTGCTGTTAACACTACAGTGTCC---CCGT 547
* * * * * * * *
consensus_5925#0 AGACACGTGTGGTTATGGTTGT--GTCCTGGCTACCTATGATTTACAACATTTTCCGGTG 626
consensus_5925#1 AATCCCG-ATTGTCATATTCGTCGGCCATTGCAACTCG-GATTAAATGCAAAAGACGATG 610
consensus_5925#2 ACACACGTGTAGAGAATCGCAATGGACANAAAGCTTGAAAAACAAAAGTGTNAGTAGGTG 607
* * ** * * * * * * * * **
consensus_5925#0 TTCCACTGTACAGTATG---AACGCCCCTTTATAGTTACTCGCCTGTTTTTGACTATTTT 683
consensus_5925#1 TAAGGTTATGGACTTCGCAAAGAGTCCATGAATGGTTACGAGCCG--------------- 655
consensus_5925#2 TAACACATGANNACACA---AGAAGCAACACAAGG------------------------- 639
* * * * *
consensus_5925#0 CAAGTAGTTGTTTGGATGTGGGCGTA 709
consensus_5925#1 --------------------------
consensus_5925#2 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||