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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 868 fasta sequence
[GCCTTTTTTTTTTTTTTTTTTTTGAACAAAATTCACAGCTTCAATTTATTTCTTTTTTAAGAGAACTACACACTAAGAAAAAAAACCTTAAAACCTTACTATATAAACTTTGCTAATACTTAAACAACATCAAATTTCGATACTTATTTCCCGTCACTAAAAGGGTACCCTTTTGCGGTTTATAAACACTCAACAGCACTCATTACTATTAATATTTGTCATCATTGTAGAACACTTCAAAATTGCCCTTTTTCACACGCTTCTCCGAGTTCATTTCACGATACAGCAGAAGAATGATTGTACTGGCAAATGTAAGTACCAGCGTGGCAAAGATGAACGCAAAAATCCCAAACTGTCGCTCGCCCGTACCGGCCTCGAAAAGCATCCAGTCGATATGGGCATGTCCCAGGAACCCGGTGGCAGCAACGAGAAAGCACAGAAAGGGCAGCAGATATTTGGCCTTTTCCTGCCAAATGCCCCAGAAAAATGCTCCCCCAATAACGAGATAGATGACGGACAGGATGACCACGAGCGTTATCTCCAGATTGTACGCACTGTTTTCCGAAA-A-GCAAGGACTA-GTTTGGT-CGGAAAAGCTCAGCGACCGGCCGGCCATAGTGAGCAGGTACAGGCTGCAGGCAGTC-GTACCGCTTCCGGCCAGGTACGCAATCAGCTTCTTCTCCTCGTAGGAAATGTGCAACCAGGCGGGAACTTGCAACGGCCGCATG-CTGAAGGGAACTGAGTGCAGTTTT-TTTGTGTACCCAGTAGGTACCGCCAGCAATGTTTATGTCAATCAAGCGCGTGAGTACAATTTGATTACAGATTATCAGTGGTTTGAGGCACTGACNCCTCGTGGCGATTCTGCCTGAGC]
[+] EMBL CNS091H5 [GCCTTTTTTTTTTTTTTTTTTTTGAACAAAATTCACAGCTTCAATTTATTTCTTTTTTAAGAGAACTACACACTAAGAAAAAAAACCTTAAAACCTTACTATATAAACTTTGCTAATACTTAAACAACATCAAATTTCGATACTTATTTCCCGTCACTAAAAGGGTACCCTTTTGCGGTTTATAAACACTCAACAGCACTCATTACTATTAATATTTGTCATCATTGTAGAACACTTCAAAATTGCCCTTTTTCACACGCTTCTCCGAGTTCATTTCACGATACAGCAGAAGAATGATTGTACTGGCAAATGTAAGTACCAGCGTGGCAAAGATGAACGCAAAAATCCCAAACTGTCGCTCGCCCGTACCGGCCTCGAAAAGCATCCAGTCGATATGGGCATGTCCCAGGAACCCGGTGGCAGCAACGAGAAAGCACAGAAAGGGCAGCAGATATTTGGCCTTTTCCTGCCAAATGCCCCAGAAAAATGCTCCCCCAATAACGAGATAGATGACGGACAGGATGACCACGAGCGTTATCTCCAGATTGTACGCACTGTTTTCCGAAA A GCAAGGACTA GTTTGGT CGGAAAAGCTCAGCGACCGGCCGGCCATAGTGAGCAGGTACAGGCTGCAGGCAGTC GTACCGCTTCCGGCCAGGTACGCAATCAGCTTCTTCTCCTCGTAGGAAATGTGCAACCAG ]
[-] EMBL CNS091H4 [ AAGAAAAAAAACCTTAAAACCTTACTATATAAACTTTGCTAATACTTAAACAACATCAAATTTCGATACTTATTTCCCGTCACTAAAAGGGTACCCTTTTGCGGTTTATAAACACTCAACAGCACTCATTACTATTAATATTTGTCATCATTGTAGAACACTTCAAAATTGCCCTTTTTCACACGCTTCTCCGAGTTCATTTCACGATACAGCAGAAGAATGATTGTACTGGCAAATGTAAGTACCAGCGTGGCAAAGATGAACGCAAAAATCCCAAACTGTCGCTCGCCCGTACCGGCCTCGAAAAGCATCCAGTCGATATGGGCATGTCCCAGGAACCCGGTGGCAGCAACGAGAAAGCACAGAAAGGGCAGCAGATATTTGGCCTTTTCCTGCCAAATGCCCCAGAAAAATGCTCCCCCAATAACGAGATAGATGACGGACAGGATGACCACGAGCGTTATCTCCAGATTGTACGCACTGTTTTCCGAAA A GCAAGGACTA GTTTGGT CGGAAAAGCTCAGCGACCGGCCGGCCATAGTGAGCAGGTACAGGCTGCAGGCAGTC GTACCGCTTCCGGCCAGGTACGCAATCAGCTTCTTCTCCTCGTAGGAAATGTGCAACCAGGCGGGAACTTGCAACGGCCGCATG CTGAAGGGAACTGAGTGCAGTTTT TTTGTGTACCCAGTAGG ]
[-] EMBL BX469575 [ acTTGTACGCACTGTTTTCCGAAANACGCAAGGACTACGTTTGGTCCGGAAAAGCTCAGCGACCGGCCGGCCATAGTGAGCAGGTACAGGCTGCAGGCAGTCTGTACCGCTTCCGGCTAGGTACGCAATCAGCTTCTTCTCCTCGTAGGAAATGTGCAACCAGGCGGGAACTTGCAACGGCCGCATGCCTGAAGGGAACTGAGTGCAGTTTTCTTTGTGTACGTTGCCGTTACCGCCAGCAATGTTTATGTCAATCAAGCGCGTGAGTACAATTTGATTACAGATTATCAGTGGTTTGAGGCACTGACNCCTCGTGGCGATTCTGCCTGAGC]
consensusID : consensus_5927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[GCCTGCAGCCTGTACCTGCTCACTATGGCCGGCCGGTCGCTGAGCTTTTCCGACCAAACTAGCCCTTGCTTTTCGGAAAACAGTGGGTGTTTTATCTTTACTCCTGCTTTAAGTTCCGTCATCGTTTCGCACTCCAAGGCATGGCTGGACACTTTGCCACTCTGTTTTGTTGCTTTCTGTTTCCCACACGTGCGTAGGACATACGGGAATGACTCACAGAGGGGTAACGTTGAGCAACAGCAGTTCGCCGGCAGCAATCTAACCACTTGAGTCCACCATATCGTCCAGCGTCCCATAATCCGAGGTGTTAGACAACTTACGAAAGAAATTTAGATTCGAGAATCAGCCTCAGATAGTGACGCGCCGTGCTGAAGGACGTGATTCGTGTCAGCAGATAGGACCCGCCAACACCATTTCATCATTCGTCATAATCTTTCACACAACACAGTCGTTGCACTGCCGTTGCTACATGGTTATCCCGCCACGGTTGCCGGTGTGTTGCCGGAGCTGAAAGGAATTCAACCGCTCGGAGTCGGCCTTGATCGGGCGTTTCGGCAGCTAGCAACTGTGCGCCCGGTGTGACAACTTTTACCACCCAAAAATAAAAATAAGACATATCATCTACTAAAACAAAAACAAGCCCTCTCGACACGGACAGATAGGGAAG]
[+] EMBL BX623356 [GCCTGCAGCCTGTACCTGCTCACTATGGCCGGCCGGTCGCTGAGCTTTTCCGACCAAACTAGCCCTTGCTTTTCGGAAAACAGTGGGTGTTTTATCTTTACTCCTGCTTTAAGTTCCGTCATCGTTTCGCACTCCAAGGCATGGCTGGACACTTTGCCACTCTGTTTTGTTGCTTTCTGTTTCCCACACGTGCGTAGGACATACGGGAATGACTCACAGAGGGGTAACGTTGAGCAACAGCAGTTCGCCGGCAGCAATCTAACCACTTGAGTCCACCATATCGTCCAGCGTCCCATAATCCGAGGTGTTAGACAACTTACGAAAGAAATTTAGATTCGAGAATCAGCCTCAGATAGTGACGCGCCGTGCTGAAGGACGTGATTCGTGTCAGCAGATAGGACCCGCCAACACCATTTCATCATTCGTCATAATCTTTCACACAACACAGTCGTTGCACTGCCGTTGCTACATGGTTATCCCGCCACGGTTGCCGGTGTGTTGCCGGAGCTGAAAGGAATTCAACCGCTCGGAGTCGGCCTTGATCGGGCGTTTCGGCAGCTAGCAACTGTGCGCCCGGTGTGACAACTTTTACCACCCAAAAATAAAAATAAGACATATCATCTACTAAAACAAAAACAAGCCCTCTCGACACGGACAGATAGGGAAG]
consensusID : consensus_5927#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[AACCTTTTGCGGTTTGTAAACACTCAACAGCACTCATTACTATTAATATTTTTCATCATTGTAGAACACTTCAAAATTGCCCTTTTTCACACGCTTCTCCGAGTTCATTTCACGATACAGCAGAAGAATGATTGTACTGGCAAATGTAAGTACCAGCGTGGCAAAGATGAACGCAAAAATCCCAAACTGTCGCTCGCCCGTACCGGCCTCGAAAAGCATCCAATCGATATGGGCATGCCCCAGGAACCCGGTGGCAGCAACGAGAAAGCACAGAAAGGGCAGCAGATATTTGGCCTTTTCCTGCCAAATGCCCCAGAAAAATGCTCCCCCAATAACGAGATAGATGACGGACAGGATGACCACGAGCGTTATCTCCAGATTGTACGCACTGTTTTCCGAAAAGCAAGGACTAGTTTGGTCGGAAAAGCTCAGCGACCGGCCGGCCATAGTGAGGAGGTACAGGCTGCAGGCAGTCGTACCGCTTCCGGCCAGGTACGCAATCAGCTTCTTCTCCTCGTAGGAAATGTGCACGGACGCGTGGGCGG]
[-] EMBL BM625597 [AACCTTTTGCGGTTTGTAAACACTCAACAGCACTCATTACTATTAATATTTTTCATCATTGTAGAACACTTCAAAATTGCCCTTTTTCACACGCTTCTCCGAGTTCATTTCACGATACAGCAGAAGAATGATTGTACTGGCAAATGTAAGTACCAGCGTGGCAAAGATGAACGCAAAAATCCCAAACTGTCGCTCGCCCGTACCGGCCTCGAAAAGCATCCAATCGATATGGGCATGCCCCAGGAACCCGGTGGCAGCAACGAGAAAGCACAGAAAGGGCAGCAGATATTTGGCCTTTTCCTGCCAAATGCCCCAGAAAAATGCTCCCCCAATAACGAGATAGATGACGGACAGGATGACCACGAGCGTTATCTCCAGATTGTACGCACTGTTTTCCGAAAAGCAAGGACTAGTTTGGTCGGAAAAGCTCAGCGACCGGCCGGCCATAGTGAGGAGGTACAGGCTGCAGGCAGTCGTACCGCTTCCGGCCAGGTACGCAATCAGCTTCTTCTCCTCGTAGGAAATGTGCACGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5927#0 GCCTTTTTTTTTTTTTTTTTTTTGAACAAAATTCACAGCTTCAATTTATTTCTTTTTTAA 60
consensus_5927#2 ------------------------------------------------------------
consensus_5927#1 ------------------------------------------------------------
consensus_5927#0 GAGAACTACACACTAAGAAAAAAAACCTTAAAACCTTACTATATAAACTTTGCTAATACT 120
consensus_5927#2 ------------------------------------------------------------
consensus_5927#1 --------------------------------------------GCCTGCAGCCTGTACC 16
consensus_5927#0 TAAACAACATCAAATTTCGATACTTATTTCCCGTCACTAAAAGGGTACCCTTTTGCGGTT 180
consensus_5927#2 ----------------------------------------------AACCTTTTGCGGTT 14
consensus_5927#1 TGCTCACTATGGCCGGCCGGTCGCTGAGCTTTTCCGACCAAAC--TAGCCCTTGCTTTTC 74
* ** ** *
consensus_5927#0 TATAAACACTCAACAGCAC-TCATTACTATTAATATT--TGTCATCATTGTAGAACACTT 237
consensus_5927#2 TGTAAACACTCAACAGCAC-TCATTACTATTAATATT--TTTCATCATTGTAGAACACTT 71
consensus_5927#1 GGAAAACAGTGGGTGTTTTATCTTTACTCCTGCTTTAAGTTCCGTCATCGTTTCGCACTC 134
***** * ** ***** * * * * * **** ** ****
consensus_5927#0 CAAAATTGCCCTTTTTCACACGCTTCTCCGAGTTCATTTCACGATACAGCAGAAGAATG- 296
consensus_5927#2 CAAAATTGCCCTTTTTCACACGCTTCTCCGAGTTCATTTCACGATACAGCAGAAGAATG- 130
consensus_5927#1 CAAGGCATGGCTGGACACTTTGCCACTCTGT-TTTGTTGCTTTCTGTTTCCCACACGTGC 193
*** ** ** *** * ** ** * * * * **
consensus_5927#0 ATTGTACTGGCAAATGTAAGTACCAGCGTGGCAAAGATGAACGCAAAAATCCCAAACTGT 356
consensus_5927#2 ATTGTACTGGCAAATGTAAGTACCAGCGTGGCAAAGATGAACGCAAAAATCCCAAACTGT 190
consensus_5927#1 GTAGGACATACGGGAATGACTCACAGAGGGGTAACGTTGAGC------------AACAGC 241
* * ** * * * * *** * ** ** * *** * *** *
consensus_5927#0 CGCTCGCCCGTACCGGCCTCGAAAAGCATCCAGTCGATATGGGCATGTCCCAGGAACCCG 416
consensus_5927#2 CGCTCGCCCGTACCGGCCTCGAAAAGCATCCAATCGATATGGGCATGCCCCAGGAACCCG 250
consensus_5927#1 AGTTCGCCGGCAGCAATCTAACCACTTGAGTCCACCATATCGTCCAGCGTCCCATAATCC 301
* ***** * * * ** * * **** * * * * * *
consensus_5927#0 GTGGCAGCAACGAGAAAGCACAGAAAGGGCAGCAGATATTTGGCCTTTTCCTGCCAAATG 476
consensus_5927#2 GTGGCAGCAACGAGAAAGCACAGAAAGGGCAGCAGATATTTGGCCTTTTCCTGCCAAATG 310
consensus_5927#1 GAGGTGTTA--GACAACTTAC-GAAAGAAATTTAGAT-TCGAGAATCAGCCT--CAGATA 355
* ** * ** ** ** ***** **** * * * *** ** **
consensus_5927#0 CCCCAGAAAAATGCTCCCCCAATAACGAGATAGATGACGGACAGGATGACC-ACGAGCGT 535
consensus_5927#2 CCCCAGAAAAATGCTCCCCCAATAACGAGATAGATGACGGACAGGATGACC-ACGAGCGT 369
consensus_5927#1 GTGACGCGCCGTGCTG----AAGGACGTGATTCGTGTCAGCAGATAGGACCCGCCAACAC 411
* **** ** *** *** ** * * * **** * * *
consensus_5927#0 TATCTCCAGATTGTACGCACTGTTTTCCGAAAAGCAAGGACTAGTTTGGTCGGAAAAGCT 595
consensus_5927#2 TATCTCCAGATTGTACGCACTGTTTTCCGAAAAGCAAGGACTAGTTTGGTCGGAAAAGCT 429
consensus_5927#1 CATTTCATCATTCGTCATAATCTTTCACACAACACAG----TCGTTGCACTGCCGTTGCT 467
** ** *** * * * *** * ** ** * *** * ***
consensus_5927#0 CAGCGACCGGCCGGCCATAGT----GAGCAGGTACAGG--CTGCAGGCAGTCGTACCGCT 649
consensus_5927#2 CAGCGACCGGCCGGCCATAGT----GAGGAGGTACAGG--CTGCAGGCAGTCGTACCGCT 483
consensus_5927#1 ACATGGTTATCCCGCCACGGTTGCCGGTGTGTTGCCGGAGCTGAAAGGAATTCAACCGCT 527
* ** **** ** * * * * ** *** * * * * ******
consensus_5927#0 TCCGGCCAGGTACGCAATCAGCTTCTTCTCCTCGTAGGAAATGTGCAACCAG-GCGGGAA 708
consensus_5927#2 TCCGGCCAGGTACGCAATCAGCTTCTTCTCCTCGTAGGAAATGTGCACGGAC-GCGTGGG 542
consensus_5927#1 CGGAGTCGG--CCTTGATCGGGCGTTTCGGCAGCTAGCAACTGTGCGCCCGGTGTGACAA 585
* * * * *** * *** * *** ** ***** * *
consensus_5927#0 CTTGCAACGGCCGCATGCTGAAGGGAACTGAGTGCAGTTTTTTTGTGTACCCAGTAGGTA 768
consensus_5927#2 CGG--------------------------------------------------------- 545
consensus_5927#1 CTTTTACCACCCAAAAATAAAAATAAGACATATCATCTACTAAAACAAAAACAAGCCCTC 645
*
consensus_5927#0 CCGCCAGCAATGTTTATGTCAATCAAGCGCGTGAGTACAATTTGATTACAGATTATCAGT 828
consensus_5927#2 ------------------------------------------------------------
consensus_5927#1 TCGACACGGACAGATAGGGAAG-------------------------------------- 667
consensus_5927#0 GGTTTGAGGCACTGACNCCTCGTGGCGATTCTGCCTGAGC 868
consensus_5927#2 ----------------------------------------
consensus_5927#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||