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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1253 fasta sequence
[CCGCCCACCGGAGGTGCTGAACTACACGAGATTCTCCTCCAAGATGCCGTACGGTCGTCTAAAAAATACCGAAGTCGTTGAGCGCGTCCAGCGGGGAATCATTCTCGAGAAGCCCAAAGCGTGCGCAAAGGAAATTTATGATGTCATGAAGAAGTGCTGGTCCCACAGTCCCGAGGACCGTCCCGGATTCCGAATACTGAAAGATCAACTGGCTGCCGTCGCCCAAGGACTCACCGATTAGACGAACTCGGTCGTTCTTGATTTGATTGAGTGGCATTTTACATTTCTCTCGATGATGACGATGATGATGCATATTAGTATAAGGCTAAGTTGATAAACTCTCGTACACTCGAAACGGTCTGAATCGATAGGGTTAGCGAATGGCAAGTGTAAATCTCCTCTCAAAAATCTTCCGACTTTTATTATGAAATATTTTATTGTCTTTTCCTTTCCGGTAAGGTAACTTTTGCGGTAGGTTTTGTTTTGTAACAATCTTCATGTAGCAAGTTTACAGTTGCCACATTGAAGCGAACCATTCTGCAGAGGAATGTGGAGGAATTGAAACACACGATCAGAGATAGAAAAAAAACACACACACAGAAGACAGAGTGCCAGATTTATATGTTCTAGTATACGTTTGGGTTCCGTTTTGTACGGGTGACGACGGTATCGGGTGTGACGGCAAGCGAAACGTTGATTCGGGAAGCTTGCAACCATTAAACGGACTGAGTGAAGCAAAGAGCTTGCCGCTTGATTGAGGAAGGATGCGATCGAAGGCGATAGCGATTAAACAATAAACCGCGCGTGCGAATATTTGCTTCCTGTGCAGCAGTAGCAGCGCCGTCATACATTACTATCACTGTATCGTAAAGTCTATGGTAAATACTACTATCGATAACACAATTTAACAACAGCAAACTGCAGAAAAGCCCATGGTACGACGGAACAGAGTGCATTTTCGGAATATCGCTAGTGATAAAAGGTGATGCGAATTGTGCACGGTTTAAATCACGTGTTGCGATCATTCCCCATACCCCCTCTCCTCAAAACCGTTGTGGTATTAGATTATGCAGGCATACTAATAAACATACACACAGATGATGTACCCACATCTATCGTAACATACCAGTTCTCTTATAGCTAAACAAAAGCATGGAAATCTTACGAACGAATAAATTCAAAACGTACGGCACTCTCTATTCCATCTGCCAATGGATGTGAGCGGCCGTACAATCTAAGTTAGATTATTGTAC]
[+] EMBL BM598829 [CCGCCCACCGGAGGTGCTGAACTACACGAGATTCTCCTCCAAGATGCCGTACGGTCGTCTAAAAAATACCGAAGTCGTTGAGCGCGTCCAGCGGGGAATCATTCTCGAGAAGCCCAAAGCGTGCGCAAAGGAAATTTATGATGTCATGAAGAAGTGCTGGTCCCACAGTCCCGAGGACCGTCCCGGATTCCGAATACTGAAAGATCAACTGGCTGCCGTCGCCCAAGGACTCACCGATTAGACGAACTCGGTCGTTCTTGATTTGATTGAGTGGCATTTTACATTTCTCTCGATGATGACGATGATGATGCATATTAGTATAAGGCTAAGTTGATAAACTCTCGTACACTCGAAACGGTCTGAATCGATAGGGTTAGCGAATGGCAAGTGTAAATCTCCTCTCAAAAATCTTCCGACTTTTATTATGAAATATTTTATTGTCTTTTCCTTTCCGGTAAGGTAACTTTTGCGGTAGGTTTTGTTTTGTAACAATCTTCATGTAGCAAGTTTACAGTTGCCACATTGAAGCGAACCATTCTGCAGAGGAATGTGGAGGAATTGAAACACACGATCAGAGATAGAAAAAAAACACACACACAGAAGACAGAGTGCCAGATTTATATGTTCTAGTATACGTTTGGGTTCCGTTTTGTACGGGTGACGACGGTATCGGGTGTGACGGCAAGCGAAACGTTGATTCGGGAA ]
[+] EMBL BM594824 [ ccgCGATGATGATGCATATTAGTATAAGGCTAAGTTGATAAACTCTCGTACACTCGAAACGGTCTGAATCGATAGGGTTAGCGAATGGCAAGTGTAAATCTCCTCTCAAAAATCTTCCGACTTTTATTATGAAATATTTTATTGTCTTTTCCTTTCCGGTAAGGTAACTTTTGCGGTAGGTTTTGTTTTGTAACAATCTTCATGTAGCAAGTTTACAGTTGCCACATTGAAGCGAACCATTCTGCAGAGGAATGTGGAGGAATTGAAACACACGATCAGAGATAGAAAAAAAACACACACACAGAAGACAGAGTGCCAGATTTATATGTTCTAGTATACGTTTGGGTTCCGTTTTGTACGGGTGACGACGGTATCGGGTGTGACGGCAAGCGAAACGTTGATTCGGGAAGCTTGCAACCATTAAACGGACTGAGTGAAGCAAAGAGCTTGCCGCTTGATTGAGGAAGGATGCGATCGAAGGCGATAGCGATTAAACAATAAACCGCGCGTGCGAATATTTGCTTCCTGTGCAGCAGTAGCAGCGCCGTCATACATTACTATCACTGTATCGTAAAGTCTATGGTAAATACTACTATCGATAACACAATTTAACAACAGCAAACTGCAGAAAAGCCCATGGTACGACGGAACAGAGTGCATTTTCGGAATATCGCTAGTGATAAAAGGTGATGCGAATTGTGCACGG ]
[+] EMBL BM577070 [ ccgAAAGAGCTTGCCGCTTGATTGAGGAAGGATGCGATCGAAGGCGATAGCGATTAAACAATAAACCGCGCGTGCGAATATTTGCTTCCTGTGCAGCAGTAGCAGCGCCGTCATACATTACTATCACTGTATCGTAAAGTCTATGGTAAATACTACTATCGATAACACAATTTAACAACAGCAAACTGCAGAAAAGCCCATGGTACGACGGAACAGAGTGCATTTTCGGAATATCGCTAGTGATAAAAGGTGATGCGAATTGTGCACGGTTTAAATCACGTGTTGCGATCATTCCCCATACCCCCTCTCCTCAAAACCGTTGTGGTATTAGATTATGCAGGCATACTAATAAACATACACACAGATGATGTACCCACATCTATCGTAACATACCAGTTCTCTTATAGCTAAACAAAAGCATGGAAATCTTACGAACGAATAAATTCAAAACGTACGGCACTCTCTATTCCATCTGCCAATGGATGTGAGCGGCCGTACAATCTAAGTTAGATTATTGTAC]
consensusID : consensus_5929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence
[ATTTTAGGATGAAATATTTTATTCGTCTTTTCCTTTCCGGTAAAGTAACTTTTGCGGTAGGTTTTGTTTTGTAACAATCTTCATGTAGCAAGTTTACAGTTGCCACATTGAAGCGAACCATTCTGCAGAGGAATGTGGAGGAATTGAAACACACGATCAGAGATAGAAAAAAAACACACACAGAAGACAGAGTGCCAGATTTATATGTTCTAGTATACGTTTGGGTTCCGTTTTGTACGGGTGACGACGGTATCGGGTGTGACGGCAAGCGAAACGTTGAGTCGGGAAGCTTGCAACCATTAAACGGACTGAGTGAAGCAAAGAGCTTGCCGCTTGATTGAGGGAGGATGCGATCGAAGGCGATAGCAAAACAAAAAAAAAAAAAAACAATAAACCGCGTGTGCGAATATTTGCTTCCTGTGCAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCG]
[+] EMBL CNS08SOR [ATTTTAGGATGAAATATTTTATTCGTCTTTTCCTTTCCGGTAAAGTAACTTTTGCGGTAGGTTTTGTTTTGTAACAATCTTCATGTAGCAAGTTTACAGTTGCCACATTGAAGCGAACCATTCTGCAGAGGAATGTGGAGGAATTGAAACACACGATCAGAGATAGAAAAAAAACACACACAGAAGACAGAGTGCCAGATTTATATGTTCTAGTATACGTTTGGGTTCCGTTTTGTACGGGTGACGACGGTATCGGGTGTGACGGCAAGCGAAACGTTGAGTCGGGAAGCTTGCAACCATTAAACGGACTGAGTGAAGCAAAGAGCTTGCCGCTTGATTGAGGGAGGATGCGATCGAAGGCGATAGCAAAACAAAAAAAAAAAAAAACAATAAACCGCGTGTGCGAATATTTGCTTCCTGTGCAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCG]
[+] EMBL BM631948 [ ccgCTTTTGCGGTAGGTTTTGTTTTGTAACAATCTTCATGTAGCAAGTTTACAGTTGCCACATTGAAGCGAACCATTCTGCAGAGGAATGTGGAGGAATTGAAACACACGATCAGAGATAGAAAAAAAACACACACAGAAGACAGAGTGCCAGATTTATATGTTCTAGTATACGTTTGGGTTCCGTTTTGTACGGGTGACGACGGTATCGGGTGTGACGGCAAGCGAAACGTTGAGTCGGGAAGCTTGCAACCATTAAACGGACTGAGTGAAGCAAAGAGCTTGCCGCTTGATTGAGGGAGGATGCGATCGAAGGCGATAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5929#0 CCGCCCACCGGAGGTGCTGAACTACACGAGATTCTCCTCCAAGATGCCGTACGGTCGTCT 60
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 AAAAAATACCGAAGTCGTTGAGCGCGTCCAGCGGGGAATCATTCTCGAGAAGCCCAAAGC 120
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 GTGCGCAAAGGAAATTTATGATGTCATGAAGAAGTGCTGGTCCCACAGTCCCGAGGACCG 180
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 TCCCGGATTCCGAATACTGAAAGATCAACTGGCTGCCGTCGCCCAAGGACTCACCGATTA 240
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 GACGAACTCGGTCGTTCTTGATTTGATTGAGTGGCATTTTACATTTCTCTCGATGATGAC 300
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 GATGATGATGCATATTAGTATAAGGCTAAGTTGATAAACTCTCGTACACTCGAAACGGTC 360
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 TGAATCGATAGGGTTAGCGAATGGCAAGTGTAAATCTCCTCTCAAAAATCTTCCGACTTT 420
consensus_5929#1 --------------------------------------------------------ATTT 4
***
consensus_5929#0 TATTATGAAATATTTTATT-GTCTTTTCCTTTCCGGTAAGGTAACTTTTGCGGTAGGTTT 479
consensus_5929#1 TAGGATGAAATATTTTATTCGTCTTTTCCTTTCCGGTAAAGTAACTTTTGCGGTAGGTTT 64
** *************** ******************* ********************
consensus_5929#0 TGTTTTGTAACAATCTTCATGTAGCAAGTTTACAGTTGCCACATTGAAGCGAACCATTCT 539
consensus_5929#1 TGTTTTGTAACAATCTTCATGTAGCAAGTTTACAGTTGCCACATTGAAGCGAACCATTCT 124
************************************************************
consensus_5929#0 GCAGAGGAATGTGGAGGAATTGAAACACACGATCAGAGATAGAAAAAAAACACACACACA 599
consensus_5929#1 GCAGAGGAATGTGGAGGAATTGAAACACACGATCAGAGATAGAAAAAAAACACACAC--A 182
********************************************************* *
consensus_5929#0 GAAGACAGAGTGCCAGATTTATATGTTCTAGTATACGTTTGGGTTCCGTTTTGTACGGGT 659
consensus_5929#1 GAAGACAGAGTGCCAGATTTATATGTTCTAGTATACGTTTGGGTTCCGTTTTGTACGGGT 242
************************************************************
consensus_5929#0 GACGACGGTATCGGGTGTGACGGCAAGCGAAACGTTGATTCGGGAAGCTTGCAACCATTA 719
consensus_5929#1 GACGACGGTATCGGGTGTGACGGCAAGCGAAACGTTGAGTCGGGAAGCTTGCAACCATTA 302
************************************** *********************
consensus_5929#0 AACGGACTGAGTGAAGCAAAGAGCTTGCCGCTTGATTGAGGAAGGATGCGATCGAAGGCG 779
consensus_5929#1 AACGGACTGAGTGAAGCAAAGAGCTTGCCGCTTGATTGAGGGAGGATGCGATCGAAGGCG 362
***************************************** ******************
consensus_5929#0 ATAGCGATT-------------AAACAATAAACCGCGCGTGCGAATATTTGCTTCCTGTG 826
consensus_5929#1 ATAGCAAAACAAAAAAAAAAAAAAACAATAAACCGCGTGTGCGAATATTTGCTTCCTGTG 422
***** * *************** **********************
consensus_5929#0 CAGCAGTAGCAGCGCCGTCATACATTACTATCAC-TGTATCGTAAAGTCTATGGTAAATA 885
consensus_5929#1 CAAAAAAAAAAAAA-----AAAAAAAAAGGCCACATGTGCCCGGGCG------------- 464
** * * * * * * * *** *** * *
consensus_5929#0 CTACTATCGATAACACAATTTAACAACAGCAAACTGCAGAAAAGCCCATGGTACGACGGA 945
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 ACAGAGTGCATTTTCGGAATATCGCTAGTGATAAAAGGTGATGCGAATTGTGCACGGTTT 1005
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 AAATCACGTGTTGCGATCATTCCCCATACCCCCTCTCCTCAAAACCGTTGTGGTATTAGA 1065
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 TTATGCAGGCATACTAATAAACATACACACAGATGATGTACCCACATCTATCGTAACATA 1125
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 CCAGTTCTCTTATAGCTAAACAAAAGCATGGAAATCTTACGAACGAATAAATTCAAAACG 1185
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 TACGGCACTCTCTATTCCATCTGCCAATGGATGTGAGCGGCCGTACAATCTAAGTTAGAT 1245
consensus_5929#1 ------------------------------------------------------------
consensus_5929#0 TATTGTAC 1253
consensus_5929#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||