These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 864 fasta sequence [GGCCAGAATCGGCACGAGGCGCGGCAGAAGGTGGCGCTATGTCACAGGACATTCCCTATCAGGCCCGCAACCTCGTCAAACGGATGCTGTCCGACCGGAAGGTGGACATCAACAACCACTGGAAGATGATCACGCTCATGATCGGTGGCAATGATTTCTGTGCCGAGATCTGCTACATGGCCACGCCCGAAAAGATACTGCAGTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACCTTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAGTGAGTACGATGCCGGGATAGCTCTCACGTGATCTCCAATATGATCATCTCCATTTTCTTTCCCTTCGTTTCCAGAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCACGTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTCAAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCACCGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAGACGGCCAGCGGCGATACGGGACTTTACGTACATGTCGCTCGATTGCTTCCAGCTTAGCCAGAAAGGGCTATGCGCTCGCCTCGAACGCACTTGTGGAAACAATATGCTCCGAAAACCGGGTAGGAGGGGTTAAAATCCGCAGTGAAACCTTGGNGGAAGACNGCCGGAANAGTTTTAACGCCGGTTNTAAGNGTTGTTCCGAAGACCGCCGGAAATTGCCAATATCCCTGGCGAAAAGCCCGGGAAACACGNGGTTAAGGGGNAC] [+] EMBL BX467759 [GGCCAGAATCGGCACGAGGCGCGGCAGAAGGTGGCGCTATGTCACAGGACATTCCCTATCAGGCCCGCAACCTCGTCAAACGGATGCTGTCCGACCGGAAGGTGGACATCAACAACCACTGGAAGATGATCACGCTCATGATCGGTGGCAATGATTTCTGTGCCGAGATCTGCTACATGGCCACGCCCGAAAAGATACTGCAGTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACCTTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAGTGAGTACGATGCCGGGATAGCTCTCACGTGATCTCCAATATGATCATCTCCATTTTCTTTCCCTTCGTTTCCAGAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCACGTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTCAAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCACCGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAGACGGCCAGCGGCGATACGGGACTTTACGTACATGTCGCTCGATTGCTTCCAGCTTAGCCAGAAAGGGCTATGCGCTCGCCTCGAACGCACTTGTGGAAACAATATGCTCCGAAAACCGGGTAGGAGGGGTTAAAATCCGCAGTGAAACCTTGGNGGAAGACNGCCGGAANAGTTTTAACGCCGGTTNTAAGNGTTGTTCCGAAGACCGCCGGAAATTGCCAATATCCCTGGCGAAAAGCCCGGGAAACACGNGGTTAAGGGGNAC] consensusID : consensus_593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [CGAGATCTGCTACATGGCCACGCCCGAAAAGATACTGCAGNTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACCTTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCACGTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTCAAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCACCGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAGACGGCCAGCGGCGATACGGACTTTACGTACATGTCGCTCGATTGCTTCCACCTTAGCCAGANNGGCTATGCGCTCGCCTCGAACGCACTGTGGANCAATATGCTCGANCCGGTGGGGGGTAAATCGATGAACTGGGAGCGCGAGTTTACGCTGTTTAGGTGTNCGAGCGCGGAAATGCCATTCCTGCGAACGCCCGGAAACAGCTAANGCACTCTG] [+] EMBL BX619743 [CGAGATCTGCTACATGGCCACGCCCGAAAAGATACTGCAGNTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACCTTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCACGTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTCAAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCACCGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAGACGGCCAGCGGCGATACGGACTTTACGTACATGTCGCTCGATTGCTTCCACCTTAGCCAGANNGGCTATGCGCTCGCCTCGAACGCACTGTGGANCAATATGCTCGANCCGGTGGGGGGTAAATCGATGAACTGGGAGCGCGAGTTTACGCTGTTTAGGTGTNCGAGCGCGGAAATGCCATTCCTGCGAACGCCCGGAAACAGCTAANGCACTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_593#0 GGCCAGAATCGGCACGAGGCGCGGCAGAAGGTGGCGCTATGTCACAGGACATTCCCTATC 60 consensus_593#1 ------------------------------------------------------------ consensus_593#0 AGGCCCGCAACCTCGTCAAACGGATGCTGTCCGACCGGAAGGTGGACATCAACAACCACT 120 consensus_593#1 ------------------------------------------------------------ consensus_593#0 GGAAGATGATCACGCTCATGATCGGTGGCAATGATTTCTGTGCCGAGATCTGCTACATGG 180 consensus_593#1 -------------------------------------------CGAGATCTGCTACATGG 17 ***************** consensus_593#0 CCACGCCCGAAAAGATACTGCAGT-ATCACGAGAAGAACATCGTCAGTGCGTTGCGAACC 239 consensus_593#1 CCACGCCCGAAAAGATACTGCAGNTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACC 77 *********************** *********************************** consensus_593#0 TTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAGTGAGTACGAT 299 consensus_593#1 TTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAA----------- 126 ************************************************* consensus_593#0 GCCGGGATAGCTCTCACGTGATCTCCAATATGATCATCTCCATTTTCTTTCCCTTCGTTT 359 consensus_593#1 ------------------------------------------------------------ consensus_593#0 CCAGAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCAC 419 consensus_593#1 ----AGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCAC 182 ******************************************************** consensus_593#0 GTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTC 479 consensus_593#1 GTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTC 242 ************************************************************ consensus_593#0 AAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCAC 539 consensus_593#1 AAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCAC 302 ************************************************************ consensus_593#0 CGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAG 599 consensus_593#1 CGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAG 362 ************************************************************ consensus_593#0 ACGGCCAGCGGCGATACGGGACTTTACGTACATGTCGCTCGATTGCTTCCAGCTTAGCCA 659 consensus_593#1 ACGGCCAGCGGCGATACGG-ACTTTACGTACATGTCGCTCGATTGCTTCCACCTTAGCCA 421 ******************* ******************************* ******** consensus_593#0 GAAAGGGCTATGCGCTCGCCTCGAACGCACTTGTGGAAACAATATGCTCCGAAAACCGGG 719 consensus_593#1 GANNGG-CTATGCGCTCGCCTCGAACGCACT-GTGGAN-CAATATGCTC----GANCCGG 474 ** ** ************************ ***** ********** * * ** consensus_593#0 TAGGAGGGGTTAAAATCCGCAGTGAAACCTTGGNGGAAGACNGCCGGAANAGTTTTAACG 779 consensus_593#1 TGGG--GGGTAAATCGATGAACTGGGAGCGCGAGTTTACGCTGTTTAGGT-GTNCGAGCG 531 * ** **** ** * * ** * * * * * * ** * ** consensus_593#0 CCGGTTNTAAGNGTTGTTCCGAAGACCGCC-GGAAATTGCCAATATCCCTGGCGAAAAGC 838 consensus_593#1 CGG-----AAATGCCATTCCTGCGAACGCCCGGAAACAGCTAANGCACTCTG-------- 578 * * ** * **** ** **** ***** ** ** * * consensus_593#0 CCGGGAAACACGNGGTTAAGGGGNAC 864 consensus_593#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||