These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1052 fasta sequence [CATTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAACAGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGTTGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAACAGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAGAGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCCACCAGGACCAGCAGGCTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGAATACGCGAGCTGCGCCATCTGGAAGCGTGCATCAAGGAAAGCCTTCGACTGTACCCCAGCGTCCCGCTGATGGCAAGAAAGATCGGAGAAGATGTACGAGTCGGCAAGTACAACCTGCCGACCGGGACGGAGATTATGATCCTGCCGTACGCAACGCACCGTCTCGAGCACATCTATCCCGACCCGGAGCGGTTCGATCCGGAGCGCTTCGGTGATGGGGCACCGCATCAGAACCCGTACGCCTTCCTACCGTTCAGTGCGGGTCCGCGCAACTGCATCGGCTACAAGTTTGCGTACATCGAGATGAAGACGGTCATTGCGCGAGTGTTGCAGAACTTCCACCTGTCGCCGGCACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCGCGGTGGTCTTTGGGTAAAGATGACGCCGCGCAAAGTGGTTTCGTAGTCCATAGCGTGGGATGGGGTTGACCAGTGTGGGTGTGAGCA--GCGGGACCAGTGGGAAATGTGCGAATGGAAGGAACTAAAATAAGCGATAACTTGATAAGCCGGTCGGGGAA] [+] EMBL BX608982 [CATTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAACAGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGTTGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAACAGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAGAGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCCACCAGGACCAGCAGGCTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGAATACGCGAGCTGCGCCATCTGGAAGCGTGCATCAAGGAAAGCCTTCGACTGTACCCCAGCGTCCCGCTGATGGCAAGAAAGATCGGAGAAGATGTACGAGTCGGCAAGTACAACCTGCCGACCGGGACGGAGATTATGATCCTGCCGTACGCAACGCACCGTCTCGAGCACATCTATCCCGACCCGGAGCGGTTCGATCCGGAGCGCTTCGG ] [+] EMBL BM631806 [ ccGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCCGACTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGTCACCAGGACCAGCAGGCCAAGTGCTATGAGGAGATCGAACGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGTATACGCGAGCTGCGCCACCTGGAAGCGTGCATCAAGGAAAGCCTTCGACTGTACCCCAGCGTCCCGCTGATGGCAAGAAAGATCGGGGAAGATGTACGAGTCGGCAAGTACAACCTGCCGACCGGGACGGAGATTATGATCCTGCCGTACGCAACGCACCGTCTCGAGCACATCTATCCCGACCCGGAGCGGTTCGATCCGGAGCGCTTCGGTGATGGGGCACCGCATCAGAACCCGTACGCCTTCCTACCGTTCAGTGCGGGTCCGCGCAACTGCATCGGCTACAAGTTTGCGTACATCGAGATGAAGACGGTCATTGCGCGAGTGTTGCAGAACTTCCACCTGTCGCCGGCACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCGCGGTGGTCTTTGGGTAAAGATGACGCCGCGg ] [-] EMBL CNS090P6 [ aGGTAATTGCGCGAGTGTTGCAGAACTTCCACCTGTCGCCGGCACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCGCGGTGGTCTTTGGGTAAAGATGACGCCGCGCAAAGTGGTTTCGTAGTCCATAGCGTGGGATGGGGTTGACCAGTGTGGGTGTGAGCAGCGCGGGACCAGTGGGAAATGTGCGAATGGAAGGAACTAAAAT ] [+] EMBL BM653446 [ CACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCGCGGCGGTCTTTGGGTAAAGATGACGCCGCGCAAAGTGGTTTCGTAGTCCGTAGCGTGGGATGGGGTTGACCAGTGTGGGTGTGAGCA GCGGGACCAGTGGGAAATGTGCGAATGGAAGGAATTAAAATAAGCGATAACTTGATAAGCCGGTCGGGGAA] consensusID : consensus_5932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 974 fasta sequence [CAGATCGCCACGAGGTTATCGACACGTTCACGGACAGTGCATCGTTTCTGATCGACAAGCTGCCGAAGGAGGAAACGGTACTAAACGTTACCGAGTACGTGAACAATTGTGTGCTGGACATTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAACAGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGTTGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAACAGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAGAGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCACCAGGACCAGCAGGCTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGGAATACGCGGAGCTGCGGCCATCTGGGAAGCGTGCATCAAGGGAAAGCCTTCGAACTGTACCCCAAGCGGTCCCGGCTGAATGGGCNNAGGAAAGATCCGGAGGAAGAATGTACCGAAGATCCGGCGAAGTACAAACCTTGGCCGGACCGGGGGAACGGGAGGATTNTTGATCCCTGGCNGTAAGGCAAAGNGGCACCGGTCTTGGAAGCACAATNNTTNTNCCCGAAACCNGAAACGGGTTCNAATCCCGGAAGCGGNNTTCAGGTAAATCGGGGNACACCGGANTCAAAAACCCGTAACGNCTTCATACNCGGGTAAAGTGGAGGGAACCAGGGAAACGTTGTCATTCGGGCAGAACAAAGTTTGG] [+] EMBL BX467651 [CAGATCGCCACGAGGTTATCGACACGTTCACGGACAGTGCATCGTTTCTGATCGACAAGCTGCCGAAGGAGGAAACGGTACTAAACGTTACCGAGTACGTGAACAATTGTGTGCTGGACATTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAACAGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGTTGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAACAGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAGAGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCACCAGGACCAGCAGGCTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGGAATACGCGGAGCTGCGGCCATCTGGGAAGCGTGCATCAAGGGAAAGCCTTCGAACTGTACCCCAAGCGGTCCCGGCTGAATGGGCNNAGGAAAGATCCGGAGGAAGAATGTACCGAAGATCCGGCGAAGTACAAACCTTGGCCGGACCGGGGGAACGGGAGGATTNTTGATCCCTGGCNGTAAGGCAAAGNGGCACCGGTCTTGGAAGCACAATNNTTNTNCCCGAAACCNGAAACGGGTTCNAATCCCGGAAGCGGNNTTCAGGTAAATCGGGGNACACCGGANTCAAAAACCCGTAACGNCTTCATACNCGGGTAAAGTGGAGGGAACCAGGGAAACGTTGTCATTCGGGCAGAACAAAGTTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5932#0 ------------------------------------------------------------ consensus_5932#1 CAGATCGCCACGAGGTTATCGACACGTTCACGGACAGTGCATCGTTTCTGATCGACAAGC 60 consensus_5932#0 ----------------------------------------------------------CA 2 consensus_5932#1 TGCCGAAGGAGGAAACGGTACTAAACGTTACCGAGTACGTGAACAATTGTGTGCTGGACA 120 ** consensus_5932#0 TTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAAC 62 consensus_5932#1 TTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAAC 180 ************************************************************ consensus_5932#0 AGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGT 122 consensus_5932#1 AGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGT 240 ************************************************************ consensus_5932#0 TGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAAC 182 consensus_5932#1 TGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAAC 300 ************************************************************ consensus_5932#0 AGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTT 242 consensus_5932#1 AGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTT 360 ************************************************************ consensus_5932#0 CTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAG 302 consensus_5932#1 CTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAG 420 ************************************************************ consensus_5932#0 AGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATT 362 consensus_5932#1 AGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATT 480 ************************************************************ consensus_5932#0 CAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCCACCAGGACCAGCAGG 422 consensus_5932#1 CAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGC-ACCAGGACCAGCAGG 539 ******************************************** *************** consensus_5932#0 CTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGG 482 consensus_5932#1 CTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGG 599 ************************************************************ consensus_5932#0 CCGAGGG-AATACGCG-AGCTGCG-CCATCTGG-AAGCGTGCATCAAGG-AAAGCCTTCG 537 consensus_5932#1 CCGAGGGGAATACGCGGAGCTGCGGCCATCTGGGAAGCGTGCATCAAGGGAAAGCCTTCG 659 ******* ******** ******* ******** *************** ********** consensus_5932#0 A-CTGTACCCCAGCGTCCCGCTGATGGCAAGAAAGATCGGAGAAGATGTACGAGTCGGCA 596 consensus_5932#1 AACTGTACCCCAAG----CGGTCCCGGCTGAATGGGCNNAGGAAAGATCCGGAGGAAGAA 715 * ********** ** * *** * * *** *** * * consensus_5932#0 AGTACAACCTGCCGACCGGGACGGAGATTATGATCCTGCCGTACGCAACGCACCGTCTCG 656 consensus_5932#1 TGTACCGAAGATCCGGCGAAGTACAAACCTTGGCCGGACCG-GGGGAACGGGAGGATTNT 774 **** * ** * * ** * *** * **** * * consensus_5932#0 AGCACATCTATCCCGACCCGGAGCGGT-TCGATCCGGAGCGCTTCGGTGATGGGGCACCG 715 consensus_5932#1 TGATCCCTGGCNGTAAGGCAAAGNGGCACCGGTCTTGGAAGCA-CAATNNTTNTNCCCGA 833 * * * * ** ** ** ** * ** * * * * * consensus_5932#0 CATCAGAACCCG-TACGCCTTCCTACCGTTCAGTGCGGGTCCGCGCAACTGCATCGGCTA 774 consensus_5932#1 AACCNGAAACGGGTTCNAATCCCGGAAGCGGNNTTCAGGTAAATCGGGGNACACCGGANT 893 * * *** * * * * * ** * * * *** ** *** consensus_5932#0 CAAGTTTGCGTACATCGAGATGAAGACGGTCATTGCGCGAGTGTTGCAGAACTTCCACCT 834 consensus_5932#1 CAAAAACCCGTA-ACGNCTTCATACNCGGGTAAAGTG-GAGGGAACCAGGGAAAC--GTT 949 *** **** * * *** * * * *** * *** * * consensus_5932#0 GTCGCCGGCACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCG 894 consensus_5932#1 GTCATTCGGGCAGAACAAAGTTTGG----------------------------------- 974 *** * * * *** * * consensus_5932#0 CGGTGGTCTTTGGGTAAAGATGACGCCGCGCAAAGTGGTTTCGTAGTCCATAGCGTGGGA 954 consensus_5932#1 ------------------------------------------------------------ consensus_5932#0 TGGGGTTGACCAGTGTGGGTGTGAGCAGCGGGACCAGTGGGAAATGTGCGAATGGAAGGA 1014 consensus_5932#1 ------------------------------------------------------------ consensus_5932#0 ACTAAAATAAGCGATAACTTGATAAGCCGGTCGGGGAA 1052 consensus_5932#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||