These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1161 fasta sequence [CCGCCCACGCGTCCGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCATTTTGAAAACGGCAGAGAACCTTAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCCCACAAAGTGCCACAAATTCGGAGACTTTTTTTTTGTTTTTGTGGGAACGTTCCTCGTCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGTGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTAGTGCAGTCGCACAGCCTACTGTGACGCCATTAGTTGTTGTTGTTGCATCCACACCTATTCCAGTGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCTAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTACGCGCCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCAACCGGAGTGTGTTCGCGCGTGTGTGTCTCCTGCGTTGCAGCACAGCCTACTACTTATCGCACTTTACAGTAGTGCTTGAATGCAACAGCCTGTGTGCTGGTGCCGGTTTTTTTTTGCTGAAAACGGAAACTTTTCTGCACAGAGAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCCCGCTTTCCGGAGATACGCAACGATATGCTTAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAACAAGGAGCTTCGTTCGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGCCGCAATCGAGGAAGCGCGCAAAGCGGACGTACTGATCGGCGAAACGCAACCACTGTGG] [+] EMBL BM612324 [CCGCCCACGCGTCCGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCATTTTGAAAACGGCAGAGAACCTTAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCCCACAAAGTGCCACAAATTCGGAGACTTTTTTTTTGTTTTTGTGGGAACGTTCCTCGTCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGTGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTAGTGCAGTCGCACAGCCTACTGTGACGCCATTAGTTGTTGTTGTTGCATCCACACCTATTCCAGTGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCTAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTACGCGCCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCAA ] [+] EMBL BM618496 [ ccgGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCATTTTGAAAACGGCAGAGAACCTTAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCCCACAAAGTGCCACAAATTCGGAGAC TTTTTTTTGTTTTTGTGGGAACGTTCCTCGTCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGTGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTAGTGCAGTCGCACAGCCTACTGTGACGCCATTAGTTGTTGTTGTTGCATCCACACCTATTCCAGTGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCTAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTACGCGCCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCAACCGGAGTGTGTTCGCGCGTGTGTGTCTCCTGCGTTGCAGCACAGCCTACTACTTATCGCACTTTACAGTA ] [+] EMBL BM609209 [ ccgGACGTTACGCAATTCGCCTGTTAGGTGCAATCGGTTCTGTCTGTCCACGCG CCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTGTGTGTCTCCTGCGTTGCAGCACAGCCTACTACTTATCGCAC TTGCAGTAGTGCTTGAATGCAACAGCCTGTGTGCTGGTGCCGGTTTTTTTTTGCTGAAAACGGAAACTTTTCTGCACAGAGAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCCCGCTTTCCGGAGATACGCAACGATATGCTTAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAACAAGGAGCTTCGTTCGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGCCGCAATCGAGGAAGCGCGCAAAGCGGACGTACTGATCGGCGAAACGCAACCACTGTGG] consensusID : consensus_5938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [CCGCGTTGGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCGTTTTGAGAACGGCAGAGAACCTCAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCTCTCCAAAGTGCCACAAACAGTACGGGGACTATTTTTTGTTTTTGCGGGAACGTTCCTTGCCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGCGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTTTGATCGGTGACGCCATTTGTTGTTGTTGTTGCATCCACACCTATTCCTGCGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTG] [+] EMBL BM606339 [CCGCGTTGGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCGTTTTGAGAACGGCAGAGAACCTCAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCTCTCCAAAGTGCCACAAACAGTACGGGGACTATTTTTTGTTTTTGCGGGAACGTTCCTTGCCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGCGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTTTGATCGGTGACGCCATTTGTTGTTGTTGTTGCATCCACACCTATTCCTGCGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTG] consensusID : consensus_5938#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGCGGACGCGTGGGTAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTGTGTGTCTTCTACGTTGCAGCACAGCCTACTACTTATCGCACTTACAGTAGTGTTTGAATGCAACAGCCTGTGTGCTGGTGCCGATTTTTTTGCTGAAAAACGGAAACTTTTCTGAACAGAAAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCACGCTTTCCGGAGATACGCAACGATATGCTCAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAACAAGGAGCTTCGTTCGGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGC] [+] EMBL BM588705 [CCGCGGACGCGTGGGTAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTGTGTGTCTTCTACGTTGCAGCACAGCCTACTACTTATCGCACTTACAGTAGTGTTTGAATGCAACAGCCTGTGTGCTGGTGCCGATTTTTTTGCTGAAAAACGGAAACTTTTCTGAACAGAAAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCACGCTTTCCGGAGATACGCAACGATATGCTCAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAACAAGGAGCTTCGTTCGGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5938#0 CCGCCCACGCGTCCGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATG 60 consensus_5938#1 ------CCGCGTTGGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATG 54 consensus_5938#2 ------CCGCGGACGCGTGGGTAGAGATTAAAGTTAGTTGCGCGTC-----TGACGTACG 49 **** ** ** *** * * * * ** ***** ** ** * * consensus_5938#0 ATCGACACAGTGTCGTGCGCAAACCGAGCATTTTGAAAACGGCAGAGAACCTTAGACACC 120 consensus_5938#1 ATCGACACAGTGTCGTGCGCAAACCGAGCGTTTTGAGAACGGCAGAGAACCTCAGACACC 114 consensus_5938#2 ACCG-CCCGGAGC----CGCAATTTGCG------AAAGACGTTACGCAATTT---GCCTG 95 * ** * * * * ***** * * * *** * ** * * consensus_5938#0 TCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTG 180 consensus_5938#1 TCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTG 174 consensus_5938#2 TTAGGTGCAATCGGTTCTGTCTGT--CTGTCGCGCCTCCCCCAAAGCGACA-AGTTCCTG 152 * ** * * ** *** * ***** * ** * **** ** consensus_5938#0 AGGATAAGAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCCCAC-AAA 239 consensus_5938#1 AGGATAAG--AAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCTCTCCAAA 232 consensus_5938#2 CGGCTACAA-GTGTTGGGTAAA--GAAGGGACCCGTAATTGGTTTAATTGAATCGT---- 205 ** ** * ** **** * * ** *** * consensus_5938#0 GTGCCACAAA---TTCGGAGACTTTTTTTTTGTTTTTGTGGGAACGTTCCTCGTCAGCAA 296 consensus_5938#1 GTGCCACAAACAGTACGGGGACTATTTTTT-GTTTTTGCGGGAACGTTCCTTGCCAGCAA 291 consensus_5938#2 -TTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTGTGTGTCTTCTACGTTGCAGCAC 264 * ** *** * * * * ** * ** * * * * ***** consensus_5938#0 GGCGTAAGGAATCGGCCCGAAAGCATATCAGTGTAAGGCACCGGGGGATTGTGAAA-AGT 355 consensus_5938#1 GGCGTAAGGAATCGGCCCGAAAGCATATCAGCGTAAGGCACCGGGGGATTGTGAAA-AGT 350 consensus_5938#2 AGCCTACTACTT---ATCGCACTTACAGTAGTGTTTGAATGCAACAGCCTGTGTGCTGGT 321 ** ** * ** * * * ** ** * * * **** ** consensus_5938#0 GAAAATAGAACTGCGCTCGGTTGCTGATTAGTGCAGTCGCACAGCCTACTGTGACGCCAT 415 consensus_5938#1 GAAAATAGAACTGCGCTCGGTTGCTGATTT---TGATCG-----------GTGACGCCAT 396 consensus_5938#2 GCCGATTTTTTTGCTGAAAAACGGAAACTTTTCTGAACA-------------GAAAACAT 368 * ** *** * * * * ** *** consensus_5938#0 T-AGTTGTTGTTGTTGCATCCACACCTATTCCAGTGGCAGGAGAAGGTGGGCCCTCCGGA 474 consensus_5938#1 T-TGTTGTTGTTGTTGCATCCACACCTATTCCTGCGGCAGGAGAAGGTGGGCCCTCCGGA 455 consensus_5938#2 GGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTG----CTGCTGA 424 * * **** ** * ** **** * * * * *** *** ** * ** consensus_5938#0 GGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCC 534 consensus_5938#1 GGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCC 515 consensus_5938#2 AACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGG----------AGCGCACG-CTTTCC 473 *** ***** * * * * * ** *** * ** consensus_5938#0 GGAGCCGCTA---------GACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTC 585 consensus_5938#1 GGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTC 575 consensus_5938#2 GGAGATACGC---------AACGATATGC--TCAACATTCCGG---CGGTCGATCTGGCC 519 **** * *** ** ** * * * * * *** * * * consensus_5938#0 TGTCTACGCGCCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAA 645 consensus_5938#1 TGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAA 635 consensus_5938#2 GAGCGGATACGC--------AACAAGGAGCTTCGTTCGGGAGGATGTGGTGCGCGCGTAC 571 * * ** * *** * *** * *** ** * * consensus_5938#0 GGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCAACCGGAGTGTGTTCG 705 consensus_5938#1 GGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCG 695 consensus_5938#2 ATCGATCGCA-TACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGA 630 ** * * * ** * ** * * * * **** * * consensus_5938#0 CGCGTGTGTGTCTCCTGCGTTGCAGCACAGCCTACTACTTATCGCACTTTACAGTAGTGC 765 consensus_5938#1 CGCGTG------------------------------------------------------ 701 consensus_5938#2 GGC--------------------------------------------------------- 633 ** consensus_5938#0 TTGAATGCAACAGCCTGTGTGCTGGTGCCGGTTTTTTTTTGCTGAAAACGGAAACTTTTC 825 consensus_5938#1 ------------------------------------------------------------ consensus_5938#2 ------------------------------------------------------------ consensus_5938#0 TGCACAGAGAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAAC 885 consensus_5938#1 ------------------------------------------------------------ consensus_5938#2 ------------------------------------------------------------ consensus_5938#0 GTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCCCGCTTTCCG 945 consensus_5938#1 ------------------------------------------------------------ consensus_5938#2 ------------------------------------------------------------ consensus_5938#0 GAGATACGCAACGATATGCTTAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAAC 1005 consensus_5938#1 ------------------------------------------------------------ consensus_5938#2 ------------------------------------------------------------ consensus_5938#0 AAGGAGCTTCGTTCGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAAC 1065 consensus_5938#1 ------------------------------------------------------------ consensus_5938#2 ------------------------------------------------------------ consensus_5938#0 CCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGCCGCAATCGAGGAAGCGCGCAAA 1125 consensus_5938#1 ------------------------------------------------------------ consensus_5938#2 ------------------------------------------------------------ consensus_5938#0 GCGGACGTACTGATCGGCGAAACGCAACCACTGTGG 1161 consensus_5938#1 ------------------------------------ consensus_5938#2 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||