These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1243 fasta sequence [CCGCAAAGAACTCTAAGAGCCCGAGAATCGCTGTTGTGGTGTGAAAGAAAAAAAGTGTTTTATTAATTAAAACCATCTTCTCCGTGTGACAGTGGGCGAGAAAAACGTGATTCATCGAGTGCGTTCGTGCTCAACCCTCCGGACAACGCATATTCCATCTGTATCCATTCCCAAACAAACATGGTTCCAGCTGTTTATCGCGACTGTGTGGCTTATCGCACAGCGTATGAATGAATAGTCAATATTTAACACTCTTCACCAGGGCAGCGTGCGTTCCACTTCGTTCCCCCTGCATTGCTGCAACAAATCGCCCAGCCGCCACCACCATCCCTTCACGCACATTTACGCGCTGCATCCGGGTTCGTGCATTTTTGCCATTTCGTTTTCCACCCAGCCCAGCTGACGTCAGTGCGTGTCACGAAGGCGACGAGAGAAGACGCGGAGTAAAACCAGCTACCAGGCCCCTGAAAGAAAAGGGTGTGTTTATTATAAGATTACATACACACGCACAACGTGAATCAACATTCCGGGCGTGAAAAGTTCCCCCCCAACGCAAATGGGACGGTACGGTCATTGTTAGTGCAACGCAGGTCGCGGGGAGGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCCCAAAAGCACCTCAATCAGCACACCCCAGTTGGGTTTTTGAATCAATCCAATTAGAGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAACATGCAGGACCGGAAAAGCGACGTCTCGTACATCTGCCCGTACAGCGGGCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGCGACGGATAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGGAGCAAGCTCGCGCGGGGAAAACTCGTACGGT] [+] EMBL BM577101 [CCGCAAAGAACTCTAAGAGCCCGAGAATCGCTGTTGTGGTGTGAAAGAAAAAAAGTGTTTTATTAATTAAAACCATCTTCTCCGTGTGACAGTGGGCGAGAAAAACGTGATTCATCGAGTGCGTTCGTGCTCAACCCTCCGGACAACGCATATTCCATCTGTATCCATTCCCAAACAAACATGGTTCCAGCTGTTTATCGCGACTGTGTGGCTTATCGCACAGCGTATGAATGAATAGTCAATATTTAACACTCTTCACCAGGGCAGCGTGCGTTCCACTTCGTTCCCCCTGCATTGCTGCAACAAATCGCCCAGCCGCCACCACCATCCCTTCACGCACATTTACGCGCTGCATCCGGGTTCGTGCATTTTTGCCATTTCGTTTTCCACCCAGCCCAGCTGACGTCAGTGCGTGTCACGAAGGCGACGAGAGAAGACGCGGAGTAAAACCAGCTACCAGGCCCCTGAAAGAAAAGGGTGTGTTTATTATAAGATTACATACACACGCACAACGTGAATCAACATTCCGGGCGTGAAAAGTTCCCCCCCAACGCAAATGGGACGGTACGGTCATTGTTAGTGCAACGCAGGTCGCGGGGAGGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCCCAAAAGCACCTCAATCAGC ] [+] EMBL BM613153 [ ccgCACGAAGGCCACGAGAGAAGACGCGGAGTAAAACCAGCTACCAGGCCCCTGAAAGAAAAGGGTGTGTTTATTATAAGATTACATACACACGCACAACGTGAATCAACATTCCGGGCGTGAAAAGTTCCCCCCCAACGCAAATGGGACGGTACGGTCATTGTTAGTGCAACGCAGGTCGCGGGGAGGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCCCAAAAGCACCTCAATCAGCACACCCCAGTTGGGTTTTTGAATCAATCCAATTAGAGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAA ] [+] EMBL BM632405 [ ccGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCCCAAAAGCACCTCAATCAGCACACCCCAGTTGGGGTTTTGAATCAATCCAATTAGAGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAACATGCAGGACCGGAAAAGCGACGTCTCGTACATCTGCCCGTACAGCGGGCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGCGACGGATAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGGAGCAAGCTCGCGCGGGGAAAACTCGTACGGT] consensusID : consensus_5943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [CCGCGGACGCGTGGGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTCAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAACATGCAGGATCGGAAAAGTGACGTCTCGTACATCTGCCCGTACAGCGGGCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGCCACGGACAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGGAGCAAGCTCGCGCGGTGAAAACTCGTACGGTATCGATATTTTCTGCAAGGACATGCGCAACCTACGGTTCGCGCACAAGCAGGAAAACCACTCCCGCCGGACGGTGTTCGAGAAGCTGCAGCTGTACGCCTTTCCGCGCGCCAACGAGGGCCAGCTGTTTGCGTTC] [+] EMBL BM595705 [CCGCGGACGCGTGGGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTCAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAACATGCAGGATCGGAAAAGTGACGTCTCGTACATCTGCCCGTACAGCGGGCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGCCACGGACAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGGAGCAAGCTCGCGCGGTGAAAACTCGTACGGTATCGATATTTTCTGCAAGGACATGCGCAACCTACGGTTCGCGCACAAGCAGGAAAACCACTCCCGCCGGACGGTGTTCGAGAAGCTGCAGCTGTACGCCTTTCCGCGCGCCAACGAGGGCCAGCTGTTTGCGTTC] consensusID : consensus_5943#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [AGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCNGGGAGNATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCAAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACNTATCTGTCCGGGGAAAACATGCAGGATCGTAAAAGTGACGTCTCGTACATCTGCCCGTACAGNGGGCCGGCCATCGGGACGCTGACCATCACCAACTATCGCCTGCACTTCCGTTCGCAGCCCGCCACGGACAAGGACCCGGTAATTGTGGNCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGAACTGCTGGCACTGCANGCGGAGCTAATGAA] [+] EMBL BX620309 [AGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCNGGGAGNATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCAAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACNTATCTGTCCGGGGAAAACATGCAGGATCGTAAAAGTGACGTCTCGTACATCTGCCCGTACAGNGGGCCGGCCATCGGGACGCTGACCATCACCAACTATCGCCTGCACTTCCGTTCGCAGCCCGCCACGGACAAGGACCCGGTAATTGTGGNCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGAACTGCTGGCACTGCANGCGGAGCTAATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 CCGCAAAGAACTCTAAGAGCCCGAGAATCGCTGTTGTGGTGTGAAAGAAAAAAAGTGTTT 60 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 TATTAATTAAAACCATCTTCTCCGTGTGACAGTGGGCGAGAAAAACGTGATTCATCGAGT 120 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 GCGTTCGTGCTCAACCCTCCGGACAACGCATATTCCATCTGTATCCATTCCCAAACAAAC 180 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 ATGGTTCCAGCTGTTTATCGCGACTGTGTGGCTTATCGCACAGCGTATGAATGAATAGTC 240 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 AATATTTAACACTCTTCACCAGGGCAGCGTGCGTTCCACTTCGTTCCCCCTGCATTGCTG 300 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 CAACAAATCGCCCAGCCGCCACCACCATCCCTTCACGCACATTTACGCGCTGCATCCGGG 360 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 TTCGTGCATTTTTGCCATTTCGTTTTCCACCCAGCCCAGCTGACGTCAGTGCGTGTCACG 420 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 AAGGCGACGAGAGAAGACGCGGAGTAAAACCAGCTACCAGGCCCCTGAAAGAAAAGGGTG 480 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 TGTTTATTATAAGATTACATACACACGCACAACGTGAATCAACATTCCGGGCGTGAAAAG 540 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 TTCCCCCCCAACGCAAATGGGACGGTACGGTCATTGTTAGTGCAACGCAGGTCGCGGGGA 600 consensus_5943#1 ------------------------------------------------------------ consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 GGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCC 660 consensus_5943#1 -----------------------------------------CCGCGGACGCGTGGGCGAC 19 consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 CAAAAGCACCTCAATCAGCACACCCCAGTTGGGTTTTTGAATCAATCCAATTAGAGCGAC 720 consensus_5943#1 GCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTG 79 consensus_5943#2 ---------------------------------------------------AGATAGGTG 9 consensus_5943#0 GCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTG 780 ********* consensus_5943#1 CCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACT 139 consensus_5943#2 CCAGTGGGTGTGAAACTGGACGTTCNGGGAGNATAAAAATCCCCCCGTTGCTGTTAGACT 69 consensus_5943#0 CCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACT 840 ************************* ***** **************************** consensus_5943#1 GTGGAATTGTTTCAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACA 199 consensus_5943#2 GTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACA 129 consensus_5943#0 GTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACA 900 ************ *********************************************** consensus_5943#1 CCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTC 259 consensus_5943#2 CCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTC 189 consensus_5943#0 CCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTC 960 ************************************************************ consensus_5943#1 GCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCT 319 consensus_5943#2 GCTCAACTCAAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACNTATCT 249 consensus_5943#0 GCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCT 1020 ********* ******************************************** ***** consensus_5943#1 GTCCGGTGAAAACATGCAGGATCGGAAAAGTGACGTCTCGTACATCTGCCCGTACAGCGG 379 consensus_5943#2 GTCCGGGGAAAACATGCAGGATCGTAAAAGTGACGTCTCGTACATCTGCCCGTACAGNGG 309 consensus_5943#0 GTCCGGTGAAAACATGCAGGACCGGAAAAGCGACGTCTCGTACATCTGCCCGTACAGCGG 1080 ****** ************** ** ***** ************************** ** consensus_5943#1 GCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGC 439 consensus_5943#2 GCCGGCCATCGGGACGCTGACCATCACCAACTATCGCCTGCACTTCCGTTCGCAGCCCGC 369 consensus_5943#0 GCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGC 1140 ****************** ***************************** *********** consensus_5943#1 CACGGACAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGA 499 consensus_5943#2 CACGGACAAGGACCCGGTAATTGTGGNCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGA 429 consensus_5943#0 GACGGATAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGA 1200 ***** ******************* ********************************* consensus_5943#1 GAAGGTCGGCGGAGCAAGCTCGCGCGGTGAAAACTCGTACGGTATCGATATTTTCTGCAA 559 consensus_5943#2 GAAGGTCGGCGAACT--GCTGGCACTGCANGCGGAGCTAATGAA---------------- 471 consensus_5943#0 GAAGGTCGGCGGAGCAAGCTCGCGCGGGGAAAACTCGTACGGT----------------- 1243 *********** * *** ** * * ** * consensus_5943#1 GGACATGCGCAACCTACGGTTCGCGCACAAGCAGGAAAACCACTCCCGCCGGACGGTGTT 619 consensus_5943#2 ------------------------------------------------------------ consensus_5943#0 ------------------------------------------------------------ consensus_5943#1 CGAGAAGCTGCAGCTGTACGCCTTTCCGCGCGCCAACGAGGGCCAGCTGTTTGCGTTC 677 consensus_5943#2 ---------------------------------------------------------- consensus_5943#0 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||