These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1065 fasta sequence [AGCGAAT-CGCCACGAGG-TNA-TCCGACGCGATACACGATCCACCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGCGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGCTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGCTCTACCCGGCCGCACCGATGCTGCCCCCGACGCCGGCCATGCCGTA-CGCTTACGGTCGCGCCATG-CCGGCGATGATG-CCAGTTG-CGCCCCCACCGGCAGCCAACCTGCGCACCGTTGCCTCGAACACCGACGTGCTGGGACGGTTGG-CTGTGGCCGACCTGCCGAGGATTTG-CAGCAGNCGCGCCCA--GGACATG-CAGGGCCG-CA--GCG-AGCAGGGCCTTACGAACGCCTGCGAAACAGATGGCTGACGAACGGAACCGGAGTCCGTACTTGGGCAGTACAAGGCGCTTGCAATGCGGCTTCCCAAGGGCTTGGATGGCACACCCGTCCTTGGAACCCGCGGGGCGNAAAAGGGGCTTCATCGGAGGCCAGGGAAAGGCTTACAGGGGGAACCGCCTTCGGGAGACGGGCACAGACGGGNTGGANCCGGGTATGGCATTGGCCAGACCNCAGCGAGGANCACACACTTGGATTNGGTGTTTCAAGGCCCAAGGGTTTGAGCCACGTTAACCCAGCGGCAGGNCGAAAGTGGCCGTTAAAAACCCGTTGGGATAACCCCCCGAGCGATTTGTCACAAAATAGGGNCCTCTCGAANACGGNGTTTTCAGGAACACATTNCGGNGANTTCNAAGATTGACACCCTANNANNGGACGACAGCANTGTCGATTTGGGGAAAACANCGCGANAACCA] [+] EMBL BX619585 [AGCGAATACGGCACGAGGAACACTCCGACGCCATACACGATCCACCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGCGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGCTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGCTCTACCCGGCCGCACCGATGCTGCCCCCGACGCCGGCCATGCCGTACCGCTTACGGTCGCGCCATGCCCGGCGATGATGNCCAGTTGCCGCCCCCca ] [+] EMBL BX466262 [ AAT CGCCACGAGG TNA TCCGACGCGATACACGATCCACCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGCGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGCTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGCTCTACCCGGCCGCACCGATGCTGCCCCCGACGCCGGCCATGCCGTA CGCTTACGGTCGCGCCATG CCGGCGATGATG CCAGTTG CGCCCCCACCGGCAGCCAACCTGCGCACCGTTGCCTCGAACACCGACGTGCTGGGACGGTTGG CTGTGGCCGACCTGCCGAGGATTTG CAGCAGNCGCGCCCA GGACATG CAGGGCCG CA GCG AGCAGG ] [+] EMBL BX467608 [ AT CNCCACGAGG TN GACGCGATACACGATCCACCAACAACAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGCGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGCTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGCTCTACCCGGCCGCACCGATGCTG CCCCGACGCCGGCCATGCCGTA CGCTTACGGTCGCGCCATG CCGGCGATGATG CCAGTTG CGCCCCCACCGGTNGGCAACCTGCGCACCGTTGCCTCGAACACCGAC TGCTGGGACGGTTGGCCTGTGGCCGACCTGCC AGGATTTGCCAGCA CGCGCCCAAGGGACATGNCACGGACGCCANGGCGAAGCAGGGCCTTACGAACGCCTGCGAAACAGATGGCTGACGAACGGAACCGGAGTCCGTACTTGGGCAGTACAAGGCGCTTGCAATGCGGCTTCCCAAGGGCTTGGATGGCACACCCGTCCTTGGAACCCGCGGGGCGNAAAAGGGGCTTCATCGGAGGCCAGGGAAAGGCTTACAGGGGGAACCGCCTTCGGGAGACGGGCACAGACGGGNTGGANCCGGGTATGGCATTGGCCAGACCNCAGCGAGGANCACACACTTGGATTNGGTGTTTCAAGGCCCAAGGGTTTGAGCCACGTTAACCCAGCGGCAGGNCGAAAGTGGCCGTTAAAAACCCGTTGGGATAACCCCCCGAGCGATTTGTCACAAAATAGGGNCCTCTCGAANACGGNGTTTTCAGGAACACATTNCGGNGANTTCNAAGATTGACACCCTANNANNGGACGACAGCANTGTCGATTTGGGGAAAACANCGCGANAACCA] consensusID : consensus_5946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [AGCAAAAAGCAACTCGTTCCAAGCGAGAAGTTGTGCCCGCACTCGTCGAAGCGAAAGAAAAGCGCCCGGTGGTTTTTCCCCACTTTTTGCCTCAGTGCTTTTTCGCGTGTGTCCTACCGACCGAGACCAACAACCAGCGAGAAGATGGCGTACGAACCGAAGACGGCCCCATTCGATCCCCGCTTCCCCAACCAGAACCAGACCAAGCACTGCTACCAGAGCTATCTGGATTTCTACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCAAGTACTTCAAGAACGTCTTCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGGACAGCCAGCGCGAGGAGGGCACCTTTGCCGGCCACATCTAAGGCATCCAAGCGAACCGGGAGAGGGAGAGAGAGAGGGAGCGCTGATGTTTGGTGCAACGATGTCGTCGCTCTCCCGGGATCCCTTATGCATACACCCTTTGCTAGTAAACCATCAGAAGTAACAGAAATTTGAAATTCAACCTACTACTACTACTGCTACCACCAGCAATACAAATCCGGAAGAAGAATGTTGTGTCGCGTGCGCAACGTTGCCATCCGTCACGATCCACGTGGCGCGGGCACGCGATGAAATTGAAATAAAACCATTATTAAACAGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAGGTGCC] [+] EMBL CNS08FRJ [AGCAAAAAGCAACTCGTTCCAAGCGAGAAGTTGTGCCCGCACTCGTCGAAGCGAAAGAAAAGCGCCCGGTGGTTTTTCCCCACTTTTTGCCTCAGTGCTTTTTCGCGTGTGTCCTACCGACCGAGACCAACAACCAGCGAGAAGATGGCGTACGAACCGAAGACGGCCCCATTCGATCCCCGCTTCCCCAACCAGAACCAGACCAAGCACTGCTACCAGAGCTATCTGGATTTCTACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCAAGTACTTCAAGAACGTCTTCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGGACAGCCAGCGCGAGGAGGGCACCTTTGCCGGCCACATCTAAGGCATCCAAGCGAACCGGGAGAGGGAGAGAGAGAGGGAGCGCTGATGTTTGGTGCAACGATGTCGTCGCTCTCCCGGGATCCCTTATGCATACACCCTTTGCTAGTAAACCATCAGAAGTAACAGAAATTTGAAATTCAACCTACTACTACTACTGCTACCACCAGCAATACAAATCCGGAAGAAGAATGTTGTGTCGCGTGCGCAACGTTGCCATCCGTCACGATCCACGTGGCGCGGGCACGCGATGAAATTGAAATAAAACCATTATTAAACAGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAGGTGCC] consensusID : consensus_5946#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCTCGTTCCAAGCGAGAAGTTGTGCCCGCATCGTCGAAGCGAAAGAAAAGCGCCCGGTGGTTTTTCCCCACTTTTTGCCTCAGTGCTTTTTCGCGTGTGTCCTACCGACCGAGACCTACCCCGTACCAGCGAGAAGATGGCGTACGAACCGAAGACGGCCCCATTCGATCCCCGCTTCCCGAACCAGAACCAGACCAAGCACTGCTACCAGAGCTATCTGGATTTCCACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCAAGTACTTCAAGAACGTCTTCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGGACAGCCAGCGCGAGGAGGGCACCTTTGCCGGCCACATCTAAGGCATCCAAGCGAACCGGGAGAGGGAGAGAGAGAGGGAGCGCTGATGTTTGGTGCAACGATGTCGTCGCTCTCCCGGGATCCCTTTTTGCATACACCCTTTGCTAGTAAACCATCAGAAGTAACAGAAATTTGAAATTCAACCTACTACTACTACTACTGCTACCACCAGCAATACAAATCCGGAAGAAGAATGTTGTGTCGCGTGCGCAACGTTGCCATCCGTCACGATCCACGTGGCGCGGGCACGCGATGAAATTGAAATAAA] [+] EMBL BM620645 [CCGCGGACGCGTGGGCGGACGCGTGGGCTCGTTCCAAGCGAGAAGTTGTGCCCGCATCGTCGAAGCGAAAGAAAAGCGCCCGGTGGTTTTTCCCCACTTTTTGCCTCAGTGCTTTTTCGCGTGTGTCCTACCGACCGAGACCTACCCCGTACCAGCGAGAAGATGGCGTACGAACCGAAGACGGCCCCATTCGATCCCCGCTTCCCGAACCAGAACCAGACCAAGCACTGCTACCAGAGCTATCTGGATTTCCACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCAAGTACTTCAAGAACGTCTTCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGGACAGCCAGCGCGAGGAGGGCACCTTTGCCGGCCACATCTAAGGCATCCAAGCGAACCGGGAGAGGGAGAGAGAGAGGGAGCGCTGATGTTTGGTGCAACGATGTCGTCGCTCTCCCGGGATCCCTTTTTGCATACACCCTTTGCTAGTAAACCATCAGAAGTAACAGAAATTTGAAATTCAACCTACTACTACTACTACTGCTACCACCAGCAATACAAATCCGGAAGAAGAATGTTGTGTCGCGTGCGCAACGTTGCCATCCGTCACGATCCACGTGGCGCGGGCACGCGATGAAATTGAAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5946#1 ------------------------------------------------------------ consensus_5946#2 ------------------------------------------------------------ consensus_5946#0 AGCGAATCGCCACGAGGTNATCCGACGCGATACACGATCCACCAAAACCAGCGTATATCG 60 consensus_5946#1 ------------------------------------------------------------ consensus_5946#2 ------------------------------------------------------------ consensus_5946#0 GCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTT 120 consensus_5946#1 ------------------------------------------------------------ consensus_5946#2 ------------------------------------------------------------ consensus_5946#0 TCCGCGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTA 180 consensus_5946#1 ------------------------------------------------------------ consensus_5946#2 ------------------------------------------------------------ consensus_5946#0 CTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCG 240 consensus_5946#1 --------------------------------------------------------AGCA 4 consensus_5946#2 -----------------------------------------CCGCGGACGCGTGGGCGGA 19 consensus_5946#0 TTCGGACCGGCCGCTCAGCTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGG 300 * consensus_5946#1 AAAAGCAACTCGTTCCA-AGCGAGAAGTTGTGCCCGCACTCGTCGAAGCGAAAGAAAAGC 63 consensus_5946#2 CGCGTGGGCTCGTTCCA-AGCGAGAAGTTGTGCCCGCA-TCGTCGAAGCGAAAGAAAAGC 77 consensus_5946#0 TATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGG-CCGTCCCGGCCTTGGACAGCT 359 * ** ** * * *** **** **** ** ** * consensus_5946#1 GCCCG-GTGGTTTTT-CCCCACTTT-TTGCCTCAGTGCTTTTTC--GCGTGTGTCCTACC 118 consensus_5946#2 GCCCG-GTGGTTTTT-CCCCACTTT-TTGCCTCAGTGCTTTTTC--GCGTGTGTCCTACC 132 consensus_5946#0 GCCCGTGTACCCGCCGCTCTACCCGGCCGCACCGATGCTGCCCCCGACGCCGGCCATGCC 419 ***** ** * * ** ** * **** * ** * * * ** consensus_5946#1 GACCG---AGACCAACA----ACCAGCGAGAAGATGGCGTACGAACCGAAGACGGCCCCA 171 consensus_5946#2 GACCG---AGACCTACCCCGTACCAGCGAGAAGATGGCGTACGAACCGAAGACGGCCCCA 189 consensus_5946#0 GTACGCTTACGGTCGCGCCATGCCGGCGATGATGCCAGTTGCGCCCCCACCGGCAGCCAA 479 * ** * * ** **** * * ** ** * ** * consensus_5946#1 TTCGATCCCCGCTTCCCCAACCA-----GAACCAGACCAAGCACTGCTACCAGAGCTATC 226 consensus_5946#2 TTCGATCCCCGCTTCCCGAACCA-----GAACCAGACCAAGCACTGCTACCAGAGCTATC 244 consensus_5946#0 CCTGCGCACCGTTGCCTCGAACACCGACGTGCTGGGACGGTTGGCTGTGGCCGACCTGCC 539 * * *** * ** * ** * * * * * * ** ** * consensus_5946#1 T-GGATTTCTA----CCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGG--TATGCAAG 279 consensus_5946#2 T-GGATTTCCA----CCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGG--TATGCAAG 297 consensus_5946#0 GAGGATTTGCAGCAGNCGCGCCCAGGACATGCAGGGCCGCAGCGAGCAGGGCCTTACGAA 599 ****** * *** * ** * * ***** **** **** * * * consensus_5946#1 TACTTCAAGAACGTCTTCTCGTCGA-TGTGCCCCAACTCGTGGGTTGAGAAGT----GGG 334 consensus_5946#2 TACTTCAAGAACGTCTTCTCGTCGA-TGTGCCCCAACTCGTGGGTTGAGAAGT----GGG 352 consensus_5946#0 CGCCTGCGAAACAGATGGCTGACGAACGGAACCGGAGTCCGTACTTGGGCAGTACAAGGC 659 * * *** * * *** * ** * ** *** * *** ** consensus_5946#1 ACAGCCAGCGCGAG-----GAGGGCACCTTTGCCGGCCACATCTAAGGCATCCAAGCGAA 389 consensus_5946#2 ACAGCCAGCGCGAG-----GAGGGCACCTTTGCCGGCCACATCTAAGGCATCCAAGCGAA 407 consensus_5946#0 GCTTGCAATGCGGCTTCCCAAGGGCTTGGATGGCACACCCGTCCTTGGAACCC--GCGGG 717 * ** *** ***** ** * * * ** ** * ** *** consensus_5946#1 CCGGGAGAGGGA--------GAGAGAGAGGGAGCGCTGATGTTTGGTGCAACGAT--GTC 439 consensus_5946#2 CCGGGAGAGGGA--------GAGAGAGAGGGAGCGCTGATGTTTGGTGCAACGAT--GTC 457 consensus_5946#0 GCGNAAAAGGGGCTTCATCGGAGGCCAGGGAAAGGCTTACAGGGGGAACCGCCTTCGGGA 777 ** * **** *** ** * *** * ** * * * * consensus_5946#1 GTCGCTCTCCCGGGATCCCTTAT-GCATACACCCTTTGCTAGTAAACCATCAGAAGTA-- 496 consensus_5946#2 GTCGCTCTCCCGGGATCCCTTTTTGCATACACCCTTTGCTAGTAAACCATCAGAAGTA-- 515 consensus_5946#0 GACGGGCACAGACGGGNTGGANCCGGGTATGGCATTGGCCAGACCNCAGCGAGGANCACA 837 * ** * * * * ** * ** ** ** * ** * * consensus_5946#1 -ACAGAAATTTGAAATTCAA---CCTACTACTACTA---CTGCTA--CCACCAGCAATAC 547 consensus_5946#2 -ACAGAAATTTGAAATTCAA---CCTACTACTACTACTACTGCTA--CCACCAGCAATAC 569 consensus_5946#0 CACTTGGATTNGGTGTTTCAAGGCCCAAGGGTTTGAGCCACGTTAACCCAGCGGCAGGNC 897 ** *** * ** * ** * * * * ** *** * *** * consensus_5946#1 AAATCCGGAAGAAGAATGTTGTGTCGCGTGCGCAACGTTGCCATCCGTCACGATCCACGT 607 consensus_5946#2 AAATCCGGAAGAAGAATGTTGTGTCGCGTGCGCAACGTTGCCATCCGTCACGATCCACGT 629 consensus_5946#0 GAAAGTGGCCGTTAAAAACCCGTTGGGATAACCCCCCGAGCGATTTGTCACAAAATAGGG 957 ** ** * ** * * * * * ** ** ***** * * * consensus_5946#1 GGCGCGGGCACGCGATGAAATTGAAATAAAACCATTATTAAACAGAGAGAAAAAAAAAAA 667 consensus_5946#2 GGCGCGGGCACGCGATGAAATTGAAATAAA------------------------------ 659 consensus_5946#0 NCCTCTCGAANACGGNGTTTTCAGGAACACATTNCGGNGANTTCNAAGATTGACACCCTA 1017 * * * * ** * * * * consensus_5946#1 AAAAAAAAAAAAAAAAAAGGCCACAGGTGCC----------------- 698 consensus_5946#2 ------------------------------------------------ consensus_5946#0 NNANNGGACGACAGCANTGTCGATTTGGGGAAAACANCGCGANAACCA 1065 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||