These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1012 fasta sequence [CCGGAAATCGCCGGCATTCGGGTGCTGTACACGGGCGACTTTTCCCGCCAGGAGGATCGGCATTTGATGGCGGCGGAAATTCCGGCCATGCGCCCGGACGTGCTGATCACCGAGTCCACGTACGGAACGCACATACACGAGAAGCGCGAGGATCGTGAGAATCGATTCACCTCGCTCGTGCAAAAGATTGTCCAGCAGGGTGGCCGGTGCTTGATTCCGGTGTTCGCGCTTGGCCGAGCGCAGGAGCTGCTGCTCATACTGGACGAGTACTGGAGT-AAAAT-CGGATCTGCAGGAA--T-CCATCTATT-CGCAT-CTCGCTGGCC-AGAAGTGTATGGCCGTGTACCAGACGTACATCAACGCGATGAACGATAAGATCCGGCGTCAGATCGCCATCAACAATCCGTTTGGTGTTTCGATTCATCTCGAACTTGAAGGGCATCGATCACTTCGACGATGTCGGACCGTGCGTCGTGATGGCGTCGCCCGGCATGATGCAGAGCGGCCTGTCCCGCGAGCTGTTCGAGTCGTGGTGTACCGATCCGAAGAACGGTGTCATCATAGCCGGTTACTGTGTCGAGGGGACGCTAGCCAAGACGATCCTTTTTGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGCTGCAACCGACCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGCCCTGATGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGCGCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAACGCTGGCCGTAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTGAGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACAT] [+] EMBL BM593626 [CCGGAAATCGCCGGCATTCGGGTGCTGTACACGGGCGACTTTTCCCGCCAGGAGGATCGGCATTTGATGGCGGCGGAAATTCCGGCCATGCGCCCGGACGTGCTGATCACCGAGTCCACGTACGGAACGCACATACACGAGAAGCGCGAGGATCGTGAGAATCGATTCACCTCGCTCGTGCAAAAGATTGTCCAGCAGGGTGGCCGGTGCTTGATTCCGGTGTTCGCGCTTGGCCGAGCGCAGGAGCTGCTGCTCATACTGGACGAGTACTGGAGTCAAAATCCGGATCTGCAGGAAATTCCCATCTATTACGCATCCTCGCTGGCCAAGAAGTGTATGGCCGTGTACCAGACGTACATCAACGCGATGAACGATAAGATCCGGCGTCAGATCGCCATCAACAATCCGTTT GTGTTTCGATTCATCTCGAACTTGAAGGGCATCGATCACTTCGATGATGTCGGACCGTGCGTCGTGATGGCGTCGCCCGGCATGATGCAGAGCGGCCTGTCC ] [+] EMBL AL934521 [ gccAGT TAAAT CGGATCTGCAGGAA T CCATCTATT CGCGT CTCGCTGGCC AGAAATGTATGGCCGTGTACCAGACGTACATCAACGCGATGAACGATAAGATCCGGCGTCAGATTGCCATCAACAATCCGTTTGGTGTTTCGATTCATCTCGAACTTGAAGGGCATCGATCACTTCGACGATGTCGGACCGTGCGTCGTGATGGCGTCGCCCGGCATGATGCAGAGCGGCCTGTCCCGCGAGCTGTTCGAGTCGTGGTGTACCGATCCGAAGAACGGTGTCATCATAGCCGGTTACTGTGTCGAGGGGACGCTAGCCAAGACGATCCTTTTTGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGGACT ] [+] EMBL BM583906 [ ccgGTTTCGATTCATCTCGAACTTGAAGGGCATCGATCACTTCGACGATGTCGGACCGTGCGTCGTGATGGCGTCGCCCGGCATGATGCAGAGCGGTCTGTCCCGCGAGCTGTTCGAGTCGTGGTGTACCGATCCGAAGAACGGCGTCATCATAGCCGGTTACTGTGTCGAGGGGACGCTAGCCAAGACGATTCTGTTTGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGCTGCAACCGACCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGCCCTGATGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGCGCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAACGCTGGCCGTAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTGAGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACAT] consensusID : consensus_5948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence [AGATCGCCGAGNTAGTTACTGTGTC-AGGGGACGCTAGCCCAGACGATCTGTTTGAGCCGGAAGAAATCACCAGCATGAACGGGCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGC-ACACACGGACTACCAGCA-GACGA-GCGAATTCATTCGACTGCTGCAACCGA-CCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGCCCTGATGCGCGAGTACGAA-GCCAACCC-GAAAGTACAAA-TTACGTTCCACAACCCGCGCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAACGCTGGCCG-TAGGGGAACCGGCCGATTGTCAG-CGA-TTGAGCGGGGTG-TTGGTAAAGCGTGAGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACATGAGCATGTCGAGTCGTGACACAAAAGCAAAGCATTCATTGGCCCGGGTCGACCGTAGTG] [+] EMBL AL934510 [AGATCGCCGAGNTAGTTACTGTGTC AGGGGACGCTAGCCCAGACGATCTGTTTGAGCCGGAAGAAATCACCAGCATGAACGGGCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGC ACACACGGACTACCAGCA GACGA GCGAATTCATTCGACTGCTGCAACCGA CCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGCCCTGATGCGCGAGTACGAA GCCAACCC GAAAGTACAAA TTACGTTCCACAACCCGCGCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAACGCTGGCCG TAGGGGAACCGGCCGATTGTCAG CGA TTGAGCGGGGTG TTGGTAAAGCGTGAGTTCAAGTACCACCTG ] [+] EMBL AL693969 [ cCCGAGTTAATCACTGTGTCGAGGGGACGCTA CCAGACGATCTGTATGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGGACTACATTTCCTTCTCCGCGACACACGGACTACCAGCACGACGACGCGAATTCATTCGACTGCTGCAACCGATCCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGTCGGACCTGATGCGCGAGTACGAAGGCCAACCCTGAAAGTACAAAGTTACGTTCCACAACCCGCGCAACANGCAACCGNTACAGTTGTACTTCCGGGGGGANAAAACGGCCAAGGTTATGGGAACGCTGGCCGTTAGGGGAACCGGCCGATTGTCAGTCGACTTGAGCGGGGTGCTTGGTAAAGCGTGAGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACATGAGCATGTCGAGTCGTGACACAAAAGCAAAGCATTCATTGGCCCGGGTCGACCGTAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5948#0 CCGGAAATCGCCGGCATTCGGGTGCTGTACACGGGCGACTTTTCCCGCCAGGAGGATCGG 60 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 CATTTGATGGCGGCGGAAATTCCGGCCATGCGCCCGGACGTGCTGATCACCGAGTCCACG 120 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 TACGGAACGCACATACACGAGAAGCGCGAGGATCGTGAGAATCGATTCACCTCGCTCGTG 180 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 CAAAAGATTGTCCAGCAGGGTGGCCGGTGCTTGATTCCGGTGTTCGCGCTTGGCCGAGCG 240 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 CAGGAGCTGCTGCTCATACTGGACGAGTACTGGAGTAAAATCGGATCTGCAGGAATCCAT 300 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 CTATTCGCATCTCGCTGGCCAGAAGTGTATGGCCGTGTACCAGACGTACATCAACGCGAT 360 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 GAACGATAAGATCCGGCGTCAGATCGCCATCAACAATCCGTTTGGTGTTTCGATTCATCT 420 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 CGAACTTGAAGGGCATCGATCACTTCGACGATGTCGGACCGTGCGTCGTGATGGCGTCGC 480 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 CCGGCATGATGCAGAGCGGCCTGTCCCGCGAGCTGTTCGAGTCGTGGTGTACCGATCCGA 540 consensus_5948#1 ------------------------------------------------------------ consensus_5948#0 AGAACGGTGTCATCATAGCCGGTTACTGTGTCGAGGGGACGCTAGCCAAGACGATCCTTT 600 consensus_5948#1 ------AGATCGCCG-AGNTAGTTACTGTGTC-AGGGGACGCTAGCCCAGACGATC-TGT 51 ** * ** *********** ************** ******** * * consensus_5948#0 TTGAGCCGGAAGAAATCACCAGCATGAACGGCCAGAAGCTGCCACTCAACATGTCCGTGG 660 consensus_5948#1 TTGAGCCGGAAGAAATCACCAGCATGAACGGGCAGAAGCTGCCACTCAACATGTCCGTGG 111 ******************************* **************************** consensus_5948#0 ACTACATTTCCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGC 720 consensus_5948#1 ACTACATTTCCTTCTCCGCACACACGGACTACCAGCAGACGAGCGAATTCATTCGACTGC 171 ************************************************************ consensus_5948#0 TGCAACCGACCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGT 780 consensus_5948#1 TGCAACCGACCCACGTGGTGCTGGTGCACGGAGAACAGAACGAGATGGGCCGTCTGAAGT 231 ************************************************************ consensus_5948#0 CGGCCCTGATGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGC 840 consensus_5948#1 CGGCCCTGATGCGCGAGTACGAAGCCAACCCGAAAGTACAAATTACGTTCCACAACCCGC 291 ************************************************************ consensus_5948#0 GCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAA 900 consensus_5948#1 GCAACACGCAACCGGTAGAGTTGTACTTCCGGGGGGAGAAAACGGCCAAGGTTATGGGAA 351 ************************************************************ consensus_5948#0 CGCTGGCCGTAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTG 960 consensus_5948#1 CGCTGGCCGTAGGGGAACCGGCCGATTGTCAGCGATTGAGCGGGGTGTTGGTAAAGCGTG 411 ************************************************************ consensus_5948#0 AGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACAT-------- 1012 consensus_5948#1 AGTTCAAGTACCACCTGCTCGCACCGACCGATCTGTCCAAGTACACCGACATGAGCATGT 471 **************************************************** consensus_5948#0 --------------------------------------------------- consensus_5948#1 CGAGTCGTGACACAAAAGCAAAGCATTCATTGGCCCGGGTCGACCGTAGTG 522 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||