|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1331 fasta sequence
[CAAAACGCTACCAGCCCCCTAATGGTTTACGCCGAACCGCAATAGCTATCAATTTTAATCATTTTTATTATCCTTCACTTTTGCTCTCTATCTCTCCGTCGGTGCTCTTTTTCGTTCCGGGTCTGGTGCTTCCGGTGCACGTGCCCTGCCCTTTCCGGTGCACTTGCATGTGCGTTTGGAGCACATTCTTGTAGCTAAACCAGCGTTCGCACAGATCGCACTGAAACCGTCGCTCTTTGGTGTGGGAAAGCTTGTGCAGGCGCAGATTGTGCGAAGATTTGAATGATTTCTTACACTCGCCACATTGGTACGGTCTTTCGCCGGTGTGCGTCCGCAGGTGCTTTTTTAAGCCGGAACTGTTCACGAACGAACTTTCGCACTCGCTGCATGCAAACGGTTTGCTCTGCGTGTGGTACCGCATGTGGACGACCAGCGAGCTTCGGTACTTGAACGTATCTTCGCACACTTCGCACTTAAACTTACGCTCATCCGTGTGAGTTAGCTTATGAGATCGTAACGACTGTGGATCTTTGAACGCCTTATCACACTGTTCGCACCGGTACGGACGGTGGCCCGTGTGCTGGTTCAGGTGGTACGTCAGGTTACCCTTCTGGGCGAAAGCGCGCTGGCAAACGGGGCACACGTACCGCTTTTCTCCGGTATGGACAAGCATGTGCTGCTTTAAATTTTGCTGCCAACTACCGCACACTGTACATTGTGATTTTTTGCTCCCGGTTCTACCCTTACTGT-GGGGCTGCTTTTCCACGGGTAAATGGCTGTGCTTCACATTATCTGGGGCGTTCGAGGTAGTAGTGGCCGGTGGGACGGGTATACTTTCGCTGGCGGGTAGGTCCAGCTCGTACTCGTGATGCGCGTCTGTGAGTTCGACCACGTAAAACTCCTCGTTCGTGCTCTTTCCATCGCACGGAGGGTTTGGCGATGCTTCTACCGATTTCACGTGCATCTGCTGTACCTTGGATTCGGGTGCTTGCTCATCATTCGATTGCGAGAGCGTGTTCGCTGGATCTTGCTCTTGCACTGCCGCTTCAGTCTTGTCACTGTGCTGTCTCCGTTGCCATAGCTTCTGATCCACCTCACGGCATAGCTTCACAAACTTCTCGCAAATAATGAGCTGGGAAATGCATCCATCACACACCGTTGTGGGTGCATCGGGAAAATCGGCTAGCCTTACGCCGGTGCACTGAAATATCCGTTCAAACAGTGTCGCTGCTGACGAGCTGGAAAACACCCCCGTTTGCTCACCGTTCTGGCTAAGGCATAGTCGACAGAAATCTGGCTGAAATAGTCGTTTTTGGTGGTTTGCTCCTCCA]
[+] EMBL CNS08MWA [CAAAACGCTACCAGCCCCCTAATGGTTTACGCCGAACCGCAATAGCTATCAATTTTAATCATTTTTATTATCCTTCACTTTTGCTCTCTATCTCTCCGTCGGTGCTCTTTTTCGTTCCGGGTCTGGTGCTTCCGGTGCACGTGCCCTGCCCTTTCCGGTGCACTTGCATGTGCGTTTGGAGCACATTCTTGTAGCTAAACCAGCGTTCGCACAGATCGCACTGAAACCGTCGCTCTTTGGTGTGGGAAAGCTTGTGCAGGCGCAGATTGTGCGAAGATTTGAATGATTTCTTACACTCGCCACATTGGTACGGTCTTTCGCCGGTGTGCGTCCGCAGGTGCTTTTTTAAGCCGGAACTGTTCACGAACGAACTTTCGCACTCGCTGCATGCAAACGGTTTGCTCTGCGTGTGGTACCGCATGTGGACGACCAGCGAGCTTCGGTACTTGAACGTATCTTCGCACACTTCGCACTTAAACTTACGCTCATCCGTGTGAGTTAGCTTATGAGATCGTAACGACTGTGGATCTTTGAACGCCTTATCACACTGTTCGCACCGGTACGGACGGTGGCCCGTGTGCTGGTTCAGGTGGTACGTCAGGTTACCCTTCTGGGCGAAA CGCGCTGGCAAACGGGGCACACGTACCGCTTTTCTCCGGTATGGACAAGCATGTTCTGCTTTAAATTTTGCTGCCAACTACCGCACACTGTACATTGTGATTTTTTGCTCCCGGTTCTACCCTTACTGTGGGGGCTGCTTTTCCACGGGTAAATGGCTGTTCTTCACATTATCTGGGGGGTTCGAGGT ]
[-] EMBL CNS08MW9 [ TGAACGCCTTATCACACTGTTCGCACCGGTACGGACGGTGGCCCGTGTGCTGGTTCAGGTGGTACGTCAGGTTACCCTTCTGGGCGAAAGCGCGCTGGCAAACGGGGCACACGTACCGCTTTTCTCCGGTATGGACAAGCATGTGCTGCTTTAAATTTTGCTGCCAACTACCGCACACTGTACATTGTGATTTTTTGCTCCCGGTTCTACCCTTACTGT GGGGCTGCTTTTCCACGGGTAAATGGCTGTGCTTCACATTATCTGGGGCGTTCGAGGTAGTAGTGGCCGGTGGGACGGGTATACTTTCGCTGGCGGGTAGGTCCAGCTCGTACTCGTGATGCGCGTCTGTGAGTTCGACCACGTAAAACTCCTCGTTCGTGCTCTTTCCATCGCACGGAGGGTTTGGCGATGCTTCTACCGATTTCACGTGCATCTGCTGTACCTTGGATTCGGGTGCTTGCTCATCATTCGATTGCGAGAGCGTGTTCGCTGGATCTTGCTCTTGCACTGCCGCTTCAGTCTTGTCACTGTGCTGTCTCCGTTGCCATAGCTTCTGATCCACCTCACGGCATAGCTTCACAAACTTCTCGCAAATAATGAGCTGGGAAATGCATCCATCACACACCGTTGTGGGTGCATCGGGAAAATCGGCTAGCCTTACGCCGGTGCACTGAAATATCCGTTCAAACAGTGTCGCTGCTGACGAGCTGGAAAACACCCCCGTTTGCTCACCGTTCTGGCTAAGGCATAGTCGACAGAAATCTGGCTGAAATAGTCGTTTTTGGTGGTTTGCTCCTCCA]
[-] EMBL BX627195 [ TCAGGTGGTACGTCAGGTTNCCTTTCTGAGCAAAAGCGCGCTGGCAAACGGGGCACACGTACCGCTTTTCTCCGGTATGGACAAGCATGTGCTGCTTTAAATTTTGCTGCCAACTACCGCACACTGTACATTGTGATTTTTTGCTCCCGGTTCTACCCTTACTGT GGGGCTGCTTTTCCACGGGTAAATGGCCGTGCTTCACATTATCTGTGGCGTTCGAGGTAGTAGTGGCCGGTGGGACGGGTATACTTTCGCTGCCAGGTAGGTCCAGCTCGTACTCGTGATGCGCGTCCGTGAGTTCGACCACGTAAAACTCCTCGTTCGTGCTCTTTCCATCGCACGGAGGGTTTGGCGATGCTTCGTCCGATTTCACGTGCATATGCTGTACCTTGGATTCGGGTGCTTGCTCATCATTCGATTGCGAGAGCGTGTTCGCTGGATCTTGCTCTTGCACTGCCCCTTCAGTCTTGTCACTGTGCTGTCTCCGGTGCCATAACTTCTGATCCACCTCACGGCATAGCTTCACAAACTTCTCGCAAATAACGAGGTGGGAAATGCATCCATCACACACCGTTGGGCGTACATCGGGAAAATCGGCTAGCCTTACGCCGGTGCAGTGAAATATCCGTTCAAACAGTGCCGCTGCTGACGAGCTGGAAAACACCCCCGTTTGCTCACCGTTCTGGCTAAGGCATAGTCGACAGAA ]
consensusID : consensus_5971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence
[AAGCATGTGCTGCTTTAAATTTTGCTGCCAACTACCGCACACTGTACATTGTGATTTTTTGCTCCCGGTTCTACCCTTACTGTGGGGCTGCTTTTCCACGGGTAAATGGCTGTGCTTCACATTATCTGGGGCGTTCGAGGTAGTAGTGGCCGGTGGGACGGGTATACTTTCGCTGCCGGGTAGGTCCAGCTCGTACTCGTGATGCGCGTCTGTGAGTTCGACCACGTAAAACTCCTCGTTCGTGCTCTTTCCATCGCACGGAGGGTTTGGCGATGCTTCTACCGATTTCACGTGCATCTGCTGTACCTTGGATTCGGGTGCTTGCTCATCATTCGATTGCGAGAGCGTGTTCGCTGGATCTTGCTCTTGCACTGCCGCTTCAGTCTTGTCACTGTGCTGTCTCCGTTGCCATAGCTTCTGATCCACCTCACGACATAGCTTCACAAACTTCTCGCAAATAACAAGCTGGGAAATGCATCCATCACACACCGTTGTGGGTGCATCGGGAAAATCGGCTAGCCTTACGCCGGTGCACTGAAATATCCGTTCAAACAGTGTCGCTGCTGACGAGCTGGAAAACACCCCCGTTTGCTCACCGTTCTGGCTAAGGCATAGTCGACAGAAATCTGGCTGAAATAGTCGTTTTTCCTCCGTG-CAGAGGAATATTTCG]
[-] EMBL BX624568 [AAGCATGTGCTGCTTTAAATTTTGCTGCCAACTACCGCACACTGTACATTGTGATTTTTTGCTCCCGGTTCTACCCTTACTGTGGGGCTGCTTTTCCACGGGTAAATGGCTGTGCTTCACATTATCTGGGGCGTTCGAGGTAGTAGTGGCCGGTGGGACGGGTATACTTTCGCTGCCGGGTAGGTCCAGCTCGTACTCGTGATGCGCGTCTGTGAGTTCGACCACGTAAAACTCCTCGTTCGTGCTCTTTCCATCGCACGGAGGGTTTGGCGATGCTTCTACCGATTTCACGTGCATCTGCTGTACCTTGGATTCGGGTGCTTGCTCATCATTCGATTGCGAGAGCGTGTTCGCTGGATCTTGCTCTTGCACTGCCGCTTCAGTCTTGTCACTGTGCTGTCTCCGTTGCCATAGCTTCTGATCCACCTCACGACATAGCTTCACAAACTTCTCGCAAATAACAAGCTGGGAAATGCATCCATCACACACCGTTGTGGGTGCATCGGGAAAATCGGCTAGCCTTACGCCGGTGCACTGAAATATCCGTTCAAACAGTGTCGCTGCTGACGAGCTGGAAAACACCCCCGTTTGCTCACCGTTCTGGCTAAGGCATAGTCGACAGAAATCTGGCTGAAATAGTCGTTTTTCCTCCGTG CAG ]
[-] EMBL BX619321 [ CGTGCATCTGCTGTACCTTGGATTCGGGTGCTTGCTCATCATTCGATTGCGAGAGCGTGTTCGCTGGATCTTGCTCTTGCACTGCCGCTTCAGTCTTGTCACTGTGCTGTCTCCGGTGCCATAGCTTCTGATCCACTTCACGGCAAAGCTTCACAAACTTCTCGCAAATAACGAGCTGGGAAATGCATCCATCACACACCGTTGTGGGTGCATCGGGAAAATCGGCTAGCCTTACGCCGGTGCACTGAAATATCCGTTCAAACAGTGTCGCTGCTGACGAGCTGGAAAACACCCCCGTTTGCTCACCGTTCTGGCTAAGGCATAGTCGACAGAAATCTGGCTGAAATAGTCGTTT CTCCGTGNCAGAGGAATATTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5971#0 CAAAACGCTACCAGCCCCCTAATGGTTTACGCCGAACCGCAATAGCTATCAATTTTAATC 60
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 ATTTTTATTATCCTTCACTTTTGCTCTCTATCTCTCCGTCGGTGCTCTTTTTCGTTCCGG 120
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 GTCTGGTGCTTCCGGTGCACGTGCCCTGCCCTTTCCGGTGCACTTGCATGTGCGTTTGGA 180
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 GCACATTCTTGTAGCTAAACCAGCGTTCGCACAGATCGCACTGAAACCGTCGCTCTTTGG 240
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 TGTGGGAAAGCTTGTGCAGGCGCAGATTGTGCGAAGATTTGAATGATTTCTTACACTCGC 300
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 CACATTGGTACGGTCTTTCGCCGGTGTGCGTCCGCAGGTGCTTTTTTAAGCCGGAACTGT 360
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 TCACGAACGAACTTTCGCACTCGCTGCATGCAAACGGTTTGCTCTGCGTGTGGTACCGCA 420
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 TGTGGACGACCAGCGAGCTTCGGTACTTGAACGTATCTTCGCACACTTCGCACTTAAACT 480
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 TACGCTCATCCGTGTGAGTTAGCTTATGAGATCGTAACGACTGTGGATCTTTGAACGCCT 540
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 TATCACACTGTTCGCACCGGTACGGACGGTGGCCCGTGTGCTGGTTCAGGTGGTACGTCA 600
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 GGTTACCCTTCTGGGCGAAAGCGCGCTGGCAAACGGGGCACACGTACCGCTTTTCTCCGG 660
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 TATGGACAAGCATGTGCTGCTTTAAATTTTGCTGCCAACTACCGCACACTGTACATTGTG 720
consensus_5971#1 -------AAGCATGTGCTGCTTTAAATTTTGCTGCCAACTACCGCACACTGTACATTGTG 53
*****************************************************
consensus_5971#0 ATTTTTTGCTCCCGGTTCTACCCTTACTGTGGGGCTGCTTTTCCACGGGTAAATGGCTGT 780
consensus_5971#1 ATTTTTTGCTCCCGGTTCTACCCTTACTGTGGGGCTGCTTTTCCACGGGTAAATGGCTGT 113
************************************************************
consensus_5971#0 GCTTCACATTATCTGGGGCGTTCGAGGTAGTAGTGGCCGGTGGGACGGGTATACTTTCGC 840
consensus_5971#1 GCTTCACATTATCTGGGGCGTTCGAGGTAGTAGTGGCCGGTGGGACGGGTATACTTTCGC 173
************************************************************
consensus_5971#0 TGGCGGGTAGGTCCAGCTCGTACTCGTGATGCGCGTCTGTGAGTTCGACCACGTAAAACT 900
consensus_5971#1 TGCCGGGTAGGTCCAGCTCGTACTCGTGATGCGCGTCTGTGAGTTCGACCACGTAAAACT 233
** *********************************************************
consensus_5971#0 CCTCGTTCGTGCTCTTTCCATCGCACGGAGGGTTTGGCGATGCTTCTACCGATTTCACGT 960
consensus_5971#1 CCTCGTTCGTGCTCTTTCCATCGCACGGAGGGTTTGGCGATGCTTCTACCGATTTCACGT 293
************************************************************
consensus_5971#0 GCATCTGCTGTACCTTGGATTCGGGTGCTTGCTCATCATTCGATTGCGAGAGCGTGTTCG 1020
consensus_5971#1 GCATCTGCTGTACCTTGGATTCGGGTGCTTGCTCATCATTCGATTGCGAGAGCGTGTTCG 353
************************************************************
consensus_5971#0 CTGGATCTTGCTCTTGCACTGCCGCTTCAGTCTTGTCACTGTGCTGTCTCCGTTGCCATA 1080
consensus_5971#1 CTGGATCTTGCTCTTGCACTGCCGCTTCAGTCTTGTCACTGTGCTGTCTCCGTTGCCATA 413
************************************************************
consensus_5971#0 GCTTCTGATCCACCTCACGGCATAGCTTCACAAACTTCTCGCAAATAATGAGCTGGGAAA 1140
consensus_5971#1 GCTTCTGATCCACCTCACGACATAGCTTCACAAACTTCTCGCAAATAACAAGCTGGGAAA 473
******************* **************************** **********
consensus_5971#0 TGCATCCATCACACACCGTTGTGGGTGCATCGGGAAAATCGGCTAGCCTTACGCCGGTGC 1200
consensus_5971#1 TGCATCCATCACACACCGTTGTGGGTGCATCGGGAAAATCGGCTAGCCTTACGCCGGTGC 533
************************************************************
consensus_5971#0 ACTGAAATATCCGTTCAAACAGTGTCGCTGCTGACGAGCTGGAAAACACCCCCGTTTGCT 1260
consensus_5971#1 ACTGAAATATCCGTTCAAACAGTGTCGCTGCTGACGAGCTGGAAAACACCCCCGTTTGCT 593
************************************************************
consensus_5971#0 CACCGTTCTGGCTAAGGCATAGTCGACAGAAATCTGGCTGAAATAGTCGTTTTTG----- 1315
consensus_5971#1 CACCGTTCTGGCTAAGGCATAGTCGACAGAAATCTGGCTGAAATAGTCGTTTTTCCTCCG 653
******************************************************
consensus_5971#0 -GTGGTTTGCTCCTCCA 1331
consensus_5971#1 TGCAGAGGAATATTTCG 670
* * * * *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||