These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 963 fasta sequence [TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAAGGACATCGTTGGAAAACGGGAAA--ACACACACACACTCACACATTCCTTTGGAAATCGTTCATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGCAGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCTCAATATAGTTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTGTAAAGCAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGATGGCGAATATGAGCAAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTCGATTATGGAAATAATTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTACAAGCACTAGCGGCCCGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAGGTGTGGCGGTTCCTGACGTATATGTTTGTACATATCGGATTCATGCATCTGATTATGAATCTGCTGGTGCAAATCTTTCTTGGAGTTGCACTAGAACTGGTACACTGCTGGTGGCGTGTGGCGCTGGTGTATCTGGCTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTCCGCGCGTATTCCTTGCTGGTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTGCGACTATTATCATGAATTGGA] [+] EMBL CNS08JYN [TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAAGGACATCGTTGGAAAACGGGAAA ACACACACACACTCACACATTCCTTTGGAAATCGTTCATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGCAGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCTCAATATAGTTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTG ] [+] EMBL CNS09869 [ TGGAATTGGG AAGTAGAAAGTCGTCCCAGGAAGGACATCGTTGGAAAACGGGAAAACACACACACACACTCACACATTCCTTTGGAAATCGTTCATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGCAGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACGCGGATTCCGATGGATATCTCAATATAGTTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTGTAAAGCAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGATGGCGAATATGAGCAAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTCGATTATGGAAATAATTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTACAAGCACTAGCGGCCCGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAGGTGTGGCGGTTCCTGACGTATATGTTTGTACATATCGGATTCATGCATCTGATTATGAATCTGCTGGTGCAAATCTTTCTTGGAGTTGCACTAGAACTGGTACACTGCTGGTGGCGTGTGGCGCTGGTGTATCTGGCTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTCCGCGCGTATTCCTTGCTGGTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTGCGACTATTATCATGAATTGGA] consensusID : consensus_5992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 777 fasta sequence [AAAGTTTTATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAATACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTGGTACATTATACCAGCGATCATTATCACGAAATAAATTGACACGGCACACCACCACAACTTGCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACCTATTCCGACCAGAAATCCCGCCAAGGCACCACTTGCATGGGCAATATAGCCCACTTTATCGAAGGGATCGTTAATACTGTTGTATATTGAAACACCTAAATCGGTCACGCAAAAGACTAAAAACACAAACAGCTGGACGATAGCGTACTCCATTTGCTTCCAATTCATGATAATAGTCGCAATATGAGCTGTGATGAGTGCGTAAACTCCGCCGGAAGCACCAGCAAGGAATACGCCGCAAATGTTGCCGCCTTTGGTGTTCTTCACGTGTATTAAGGCGCTGCAGAGGGATCGCTTGTACGTGCTGCTCACAACCGG] [+] EMBL CNS08JYO [AAAGTTTTATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAATACTTATAGCAGGATTTTCCTGTCAGCACGCGCCGACATTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTGGTACATTATACTAGCGATC ] [+] EMBL CNS0986A [ ATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGC CTATGTACAATACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGACGGATCTAAAAAGTGGTACATTATACCAGCGATTATTATCACGAAATAAAT ] [-] EMBL BM635417 [ AGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAATACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTGGTACATTATACCAGCGATCATTATCACGAAATAAATTGACACGGCACACCACCACAACTTGCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACCTATTCCGACCAGAAATCCCGCCAAGGCACCACTTGCATGGGCAATATAGCCCACTTTATCGAAGGGATCGTTAATACTGTTGTATATTGAAACACCTAAATCGGTCACGCAAAAGACTAAAAACACAAACAGCTGGACGATAGCGTACTCCATTTGCTTCCAATTCATGATAATAGTCGCAATATGAGCTGTGATGAGTGCGTAAACTCCGCCGGAAGCACCAGCAAGGAATACGCCGCAAATGTTGCCGCCTTTGGTGTTCTTCACGTGTATTAAGGCGCTGCAGAGGGATCGCTTGTACGTGCTGCTCACAACCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5992#0 TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAA 60 consensus_5992#1 ------------------------------------------------------------ consensus_5992#0 GGACATCGTTGGAAAACGGGAAAACACACACACACTCACACATTCCTTTGGAAATCGTTC 120 consensus_5992#1 ----------------------------------------------------AAAGTTTT 8 ** ** consensus_5992#0 ATTCAGACCGTTAGTCGTTACTTTATAATATTCAGT-TATACAAAATGGACCGTTGTG-- 177 consensus_5992#1 ATTC------TCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCT 62 **** * ** * * **** * * *** * *** *** * **** ** consensus_5992#0 ----AGCAGCACGTACAAGCGATCCCTCTGC-AGCGCCTTAATACACGTGAAGAACACCA 232 consensus_5992#1 TGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAAT 122 ****** * * *** ** * ** ** **** * * * consensus_5992#0 AAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCT 292 consensus_5992#1 ATAAAGGCA-CGATTACCTTTCAAGTTGGAAATGATCGAT----GGTTTGGCGTAAAAGG 177 * **** * ** * ** **** * *** * * * * * consensus_5992#0 CAATATAGTTGAGATGAAA---CACC-TAATACA--CGAAAAAAAGTGTGCCGATATGCC 346 consensus_5992#1 CACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTA 237 ** ** * **** ** ** **** ** ** * ** ** * * * **** consensus_5992#0 TAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGA 406 consensus_5992#1 CAAT-ACTTATAGTAGGATTTTCCT--GTCAGCACGCGC---CGACAGTGTTCGCTTGTA 291 ** * ** ** * ** * * * ** * * * ** ** ** *** * consensus_5992#0 TTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATAT 466 consensus_5992#1 GTTTTGAGCATATGA-ATGTGCGGTTGCAA-------TACTAGAAGCCTAGTAAAAATGG 343 ** ** ** * * * * ** * * **** * * * ** consensus_5992#0 TAAATATTGTAAAGCAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGA 526 consensus_5992#1 GAAGGATCTAAAA--AGTGGTACATTATACCAGCGATCATTATCACG-AAATAAATT-GA 399 ** ** *** ****** * * * * **** * * * * * ** *** ** consensus_5992#0 TGGCGAATATGAGCAAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTC 586 consensus_5992#1 CACGGCACACCACCACAACTTGCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACC 459 * * * * ** * * ** * * * * * * * * consensus_5992#0 GATTATGGAAATAATTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTAC 646 consensus_5992#1 TATTCCGACCAGAAATCCCGCCAA----GGCACCACT----TGCATGGGCAATATAGCCC 511 *** * * ** * * * * * *** * *** ** * * consensus_5992#0 AAGCACT--AGCGGCCCGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAG 704 consensus_5992#1 ACTTTATCGAAGGGATCGTTAATACTGTTGTATAT-TGAAACACCTAAATCGGTCACGCA 570 * * * ** ** * **** *** * ** * * ** * **** consensus_5992#0 GTGTGGCGGTTCCTGACGTATATGTTTGTAC-ATATCGGATTCATGCATCTGATTATGAA 763 consensus_5992#1 AAA----GACTAAAAACACAAACAGCTGGACGATAGCGTACTC---CATTTGCTTCCAAT 623 * * ** * * ** ** *** ** * ** *** ** ** * consensus_5992#0 TCTGCTGGTGCAAATCTTTCTTGGAGTTGCACT-AGAACTGGTACACTGCTGGTGGCGTG 822 consensus_5992#1 TC--ATGATAATAGTCGCAATATGAGCTGTGATGAGTGCGTAAACTCCGCCGGAAGCAC- 680 ** ** * * ** * *** ** * ** * ** * ** ** ** consensus_5992#0 TGGCGCTGGTGTATCTGGCTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTC 882 consensus_5992#1 CAGCAA-GGAATACGCCGCAAATGTTGCCGCC--------------TTTGGTGTT--CTT 723 ** ** ** ** ***** **** * **** ** consensus_5992#0 CGCGCGTATTCCTTGCTGGTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTG 942 consensus_5992#1 CACGTGTATTAA-----GGCGCTGCAGAGGGATCGCTTGTACG---TGCTGCTCACAACC 775 * ** ***** ** *** * * *** * ** * ******* consensus_5992#0 CGACTATTATCATGAATTGGA 963 consensus_5992#1 GG------------------- 777 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||