These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1481 fasta sequence [AAATTTGTTACATTCGACCATTCGATACGGTTTTCATTCCGTGCGGACACGTCGTGGCATGTGGCAAGTGTGCCGCCTCTACTACAAAGTGTCCGATGTGCAATGAGTCGTATACTAGTGTTCAACGCATATTCCTTTCTTAGAGGATGTAGGATTTTGCAACTTATCATAACAGGTCGTGCGACACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTTATGTGTTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGC-GCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGC-GTGTGCCATTCTCGGGTTCAC-GGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAG-AATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGCGATCTGGAGACGAATTTGAATATCATGTAGGGAGCCAAGCAATATACAAATAACTAGCTTGGGCCAA-AAACTGAGTCATTCCAAAAACCATTCATTCCAAA-TAAAATATTCCA-TATTG-TCTG-TACTTGGGATAGNNTGTATCGTGCCCGTATCCCCTCANG-TTCGAAAGGTTGCTCGCAACAAACACCATGACACCGAGA---TTATATATTAATCACACGTAGAAACGTCGACTCATCTGGGCAGCCTCGGGACCGGGGGGATGTCCGGCNTAATCCGATTTCCAACGGAATAATGG-TAGAGGAGGCGAAATGNTAAAAAAGCCTCGTCACAAAAAATAAAACAATAA-AAAAACAACGGATAATGGTCAAAGAAATGTTAAATTCATGTAAATGTTTTAAAATTCACTGGTTTCACTAGAAATTTAGTAGAATATTTTTTGAATCAATAACAATAGATTTAAAATTGTCTTTTATCAAAAATGAAGTTTTAAAATATCACTAGACACTAGATTGCTGCATAACAAATGGTTTTTGCTATCCGGATCATCGCAGAACATGTTCACCAACTGTCAAATTCATGGGCACGATTAAGCCGCCCACTGGTTAATCCGTCCCCGAAAAATCGACGTTCTTCTGTAATATAGATTCGTATAAAATTTTTTGTAACGTAATACGTAATATGTAATAATACTACAAAAATAAAATATGTCAGTTCAGCATAAAATTCAACACAAGGCAGCATGTG] [+] EMBL BX626648 [AAATTTGTTACATTCGACCATTCGATACGGTTTTCATTCCGTGCGGACACGTCGTGGCATGTGGCAAGTGTGCCGCCTCTACTACAAAGTGTCCGATGTGCAATGAGTCGTATACTAGTGTTCAACGCATATTCCTTTCTTAGAGGATGTAGGATTTTGCAACTTATCATAACAGGTCGTGCGACACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTTATGTGTTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGC GCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGC GTGTGCCATTCTCGGGTTCAC GGGTTGACNAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGNTTTCAAACATCGTGCCGCAGTCATAG AATTGACTCATAACGCATT ] [+] EMBL AL931971 [ tggcttctGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTT ATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTTATGTGTTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGCTGCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCTGTGTGCCATTCTCGGGTTCACTGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGCAATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGCGATCTGGAGACGAATTTGAATATCATGTAGGGAGCCAAGCAATATACAAATAACTAGCTTGGGCCAA AAACTGAGTCATTCCAAAAACCATTCATTCCAAA TAAAATATTCCA TATTG TCTG TACTTGGGATAGNNTGTATCGTGCCCGTATCCCCTCANG TTCGAAAGGTTGCTCGCAACAAACACCATGACACCGAGA TTATATATTAATCACACGTAGAAACGTCGACTCATCTGGGCAGCCTCGGGACCGGGGGGATGTCCGGCNTAATCCGATTTCCAACGGAATAATGG TAGAGGAGGCGAAATGNTAAAAAAGCCTCGTCACAAAAAATAAAACAATAA AAAAAC ] [+] EMBL BM617879 [ ccgGTGTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGC GTGTGCCATTCTCGGGTTCAC GGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAG AATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGCGATCTGGAGACGAATTTGAATATCATGTAGGGAGCCAAGCAATATACAAATAACTAGC TGGCCCAACAAACTGAGTCATTCCAAAAA CATTCATTCCAAACTAAAATATTCCATTATTGTTTTGTTACTTGGGATAG TTGTATCGTGCCCGTATCCCCTCAGGTTTCG AAGGTTGCTCGCAACAAACACCATGACA CGAGATTTTTATATATAAAT ACA GTAG AACGTCGA TTATCTGGGCAG CTCGGGACCGGGCGGATGT CGG TTAAT CGATTTCC ACGG ATAATGGTTAGA GAGGCG AATGCT AAAAAGCCTCGT A AAAAAATAAAACAACAACAACAACAACGGATAATGGTCAAAGAAATGTTAAATTCATGTAAATGTTTTAAAATTCACTGGTTTCACTAGAAATTTAGTAGAATATTTTTTGAATCAATAACAATAGATTTAAAATTGTCTTTTATCAAAAATGAAGTTTTAAAATATCACTAGACACTAGATTGCTGCATAACAAATGGTTTTTGCTATCCG ] [-] EMBL BX466744 [ TGTAAATGTTTTAAAATTCACTGGTTTCACTAGAAATTTAGTAGAATATTTTTTGAATCAATAACAATAGATTTAAAATTGTCTTTTATCAAAAATGAAGTTTTAAAATATCACTAGACACTAGATTGCTGCATAACAAAT GTTTTTGCTATCCGGATCATCGCAGAACATGTTCACCAACTGTCAAATTCATGGGCACGATTAAGCCGCCCACTGGTTAATCCGTCCCCGAAAAATCGACGTTCTTCTGTAATATAGATTCGTATAAAATTTTTTGTAACGTAATACGTAATATGTAATAATACTACAAAAATAAAATATGTCAGTTCAGCATAAAATTCAACACAAGGCAGCATGTG] consensusID : consensus_5999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 980 fasta sequence [CAGATCCCCCCGGTTATACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTATGTGTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGCGCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCGTGTGCCATTCTCGGGTTCACGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGAATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGGATCTGGAGACGAATTTGAATATCATAGTAGGGAGCCAAGCAATATACAAATAACTAGCTGGCCAACAAACTGAGTCATTCCAAAAACATTCATTCCAAACTAACACATATTCCCATTATATGTCACTGTACAACTATGGGATAGTCAGNATCGTTGCCCGTATCCCCTCAGGTTTCGAAGGTNAGACTCGCCAACCAAAGCACCATGACACGAGATACACACTATATANAATANCAGTACGAACGTCGANAATCTGGGCANGCTACCGGGGGAAACCCGGNGACGGAATTGTCACGGACACACACCGGAGTACNCCCAAGGGGATAAACTAGGGNANACCAAGAAGGGCGGACACTGGCTCAAAAACANNAAGGCACTCCGGACAANNAANAACATCAACAAAAGCACAATAA] [+] EMBL AL930347 [CAGATCCCCCCGGTTATACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTATGTGTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGCGCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCGTGTGCCATTCTCGGGTTCACGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGAATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGGATCTGGAGACGAATTTGAATATCATAGTAGGGAGCCAAGCAATATACAAATAACTAGCTGGCCAACAAACTGAGTCATTCCAAAAACATTCATTCCAAACTAACACATATTCCCATTATATGTCACTGTACAACTATGGGATAGTCAGNATCGTTGCCCGTATCCCCTCAGGTTTCGAAGGTNAGACTCGCCAACCAAAGCACCATGACACGAGATACACACTATATANAATANCAGTACGAACGTCGANAATCTGGGCANGCTACCGGGGGAAACCCGGNGACGGAATTGTCACGGACACACACCGGAGTACNCCCAAGGGGATAAACTAGGGNANACCAAGAAGGGCGGACACTGGCTCAAAAACANNAAGGCACTCCGGACAANNAANAACATCAACAAAAGCACAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5999#0 AAATTTGTTACATTCGACCATTCGATACGGTTTTCATTCCGTGCGGACACGTCGTGGCAT 60 consensus_5999#1 ------------------------------------------------------------ consensus_5999#0 GTGGCAAGTGTGCCGCCTCTACTACAAAGTGTCCGATGTGCAATGAGTCGTATACTAGTG 120 consensus_5999#1 ------------------------------------------------------------ consensus_5999#0 TTCAACGCATATTCCTTTCTTAGAGGATGTAGGATTTTGCAACTTATCATAACAGGTCGT 180 consensus_5999#1 -----------------------------------------------CAGATCCCCCCG- 12 ** * * ** consensus_5999#0 GCGACACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATAT 240 consensus_5999#1 GTTATACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATAT 72 * * ******************************************************* consensus_5999#0 GTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAA 300 consensus_5999#1 GTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAA 132 ************************************************************ consensus_5999#0 TCCTTTATTATTTTAGATTTTTATGTGTTTTGCGTTAGTTGCCGTTTCGCTAATATCAGT 360 consensus_5999#1 TCCTTTATTATTTTAGATTTT-ATGTGTTT-GCGTTAGTTGCCGTTTCGCTAATATCAGT 190 ********************* ******** ***************************** consensus_5999#0 TTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTA 420 consensus_5999#1 TTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTA 250 ************************************************************ consensus_5999#0 CGGGCTTTGAACGACGAAAACGGCGCTCCACTGCGATCGATCCCATGATCAAGGGACACT 480 consensus_5999#1 CGGGCTTTGAACGACGAAAACGGCGCTCCACTGCGATCGATCCCATGATCAAGGGACACT 310 ************************************************************ consensus_5999#0 TTTACGATTATCATGCCGTGTGTTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTT-G 539 consensus_5999#1 TTTACGATTATCATGCCGTGTGTTT-ATCATTGCTGTGGCATACTGCTTAAAAGTGTTTG 369 ************************* ******************************** * consensus_5999#0 ACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCGTGTGCCATTCTCGGGTTC 599 consensus_5999#1 ACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCGTGTGCCATTCTCGGGTTC 429 ************************************************************ consensus_5999#0 ACGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTC 659 consensus_5999#1 ACGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTC 489 ************************************************************ consensus_5999#0 TATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGAATTGACTCATAACGCATTGAC 719 consensus_5999#1 TATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGAATTGACTCATAACGCATTGAC 549 ************************************************************ consensus_5999#0 TCATCAGCAGTTTCCCGCGATCTGGAGACGAATTTGAATATCAT-GTAGGGAGCCAAGCA 778 consensus_5999#1 TCATCAGCAGTTTCCCG-GATCTGGAGACGAATTTGAATATCATAGTAGGGAGCCAAGCA 608 ***************** ************************** *************** consensus_5999#0 ATATACAAATAACTAGCTTGGGCCAAAAACTGAGTCATTCCAAAAACCATTCATTCCAAA 838 consensus_5999#1 ATATACAAATAACTAGCT-GGCCAACAAACTGAGTCATTCCAAAAAC-ATTCATTCCAAA 666 ****************** ** * * ********************* ************ consensus_5999#0 TAAA---ATATTCC----ATAT-TGTCTGTACT----TGGGATAGNNTGTATCGT-GCCC 885 consensus_5999#1 CTAACACATATTCCCATTATATGTCACTGTACAACTATGGGATAGTCAGNATCGTTGCCC 726 ** ******* **** * ****** ******** * ***** **** consensus_5999#0 GTATCCCCTCANGTTCGAAAGGTTG--CTCGC-AAC--AAACACCATGACACCGAGATTA 940 consensus_5999#1 GTATCCCCTCAGGTTTCGAAGGTNAGACTCGCCAACCAAAGCACCATGACACGAGATACA 786 *********** *** ***** ***** *** ** *********** * consensus_5999#0 ---TATATTAATCACACGTAGAAACGTCGACTCATCTGGGCAGCCTCGGGACCGGGGGGA 997 consensus_5999#1 CACTATATANAATANCAGTACGAACGTCGANA-ATCTGGGCANGCT----ACCGGGGGAA 841 ***** * * *** ******** ********* ** ******** * consensus_5999#0 TGTCCGGCNTAATCCGATTTCCAACGGAATAATGGTAGAGGAGGCGAAATGNTAAAAAAG 1057 consensus_5999#1 -ACCCGGNGA---CGGAATTGTCACGGACACACACCGGAGTACNCCCAAGGGGATAAAC- 896 **** * ** ** ***** * *** * * ** * * *** consensus_5999#0 CCTCGTCACAAAAAATAAAACAATAAAAAAACAACGGATAATGGTCAAAGAAATGTTAAA 1117 consensus_5999#1 ---------------TAGGGNANACCAAGAAGGGCGGACACTGGCTCAA-AAACANNAAG 940 ** * ** ** **** * *** ** *** ** consensus_5999#0 TTCATGTAAATGTTTTAAAAT-TCACTGGTTTCACTAGAAATTTAGTAGAATATTTTTTG 1176 consensus_5999#1 GCACTCCGGACAANNAANAACATCAACAAAAGCACAATAA-------------------- 980 * * * ** *** *** * ** consensus_5999#0 AATCAATAACAATAGATTTAAAATTGTCTTTTATCAAAAATGAAGTTTTAAAATATCACT 1236 consensus_5999#1 ------------------------------------------------------------ consensus_5999#0 AGACACTAGATTGCTGCATAACAAATGGTTTTTGCTATCCGGATCATCGCAGAACATGTT 1296 consensus_5999#1 ------------------------------------------------------------ consensus_5999#0 CACCAACTGTCAAATTCATGGGCACGATTAAGCCGCCCACTGGTTAATCCGTCCCCGAAA 1356 consensus_5999#1 ------------------------------------------------------------ consensus_5999#0 AATCGACGTTCTTCTGTAATATAGATTCGTATAAAATTTTTTGTAACGTAATACGTAATA 1416 consensus_5999#1 ------------------------------------------------------------ consensus_5999#0 TGTAATAATACTACAAAAATAAAATATGTCAGTTCAGCATAAAATTCAACACAAGGCAGC 1476 consensus_5999#1 ------------------------------------------------------------ consensus_5999#0 ATGTG 1481 consensus_5999#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||