These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence [CTGTTGGCCTACTGGTTCCTCAGAAGCCAGATCAAATTTATTTTGAATCGAGTTTTCATCCAGCTCTGCACCGTTTTTCCAGCCCTAAGTGAGTGTTCCGTTCGCTAGGCACCGAATCTGCCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGAC-AAAACCGGGCGTAACGTCGCCCGCGGAAGTCACGTCCGATGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAGTCGCTGATGGAGCGGGTCGATGGCGTGATGATACCGGAAATGCTGTACAAAGTGTGCGGCCGCCAGATCGAGGTGCAGGAGGGCTACCCGCGCAGCATCTGCCAACGGTGTCTGTGCCAGTTGGACTGTGCGTTTAAATTTTTGAACGAGTTCCACCAGCAGGACGAACGTTTGCGCAGCTTCTACTGGAGCGGCTCCGTGGTGAAACGGCTGTATGGTTACCGCCCAGACGCACAACTACTTCTTCGGATCGCGCATCCCGTACGACAGCCTCGTCAACCAGACCACCGTCATACAGTCGAGTTCGTTCCTGCGCGTGAAGTCTGCCTACCTGGACTACCCGCTGAAGGGACAGCGTGGACGCAACATTACCGCCATCTACGTGTACGACCGGCTCGGCAGTGGCCGTGGAGGATACGCCAGCATTACGAGCGGTGGCATCGGAAAGAACTACACCCGTATCAATCTGAAGACGCAGCGTGGAAATGGCATGAACTTCCAGGTGGAAATCTACGGCCGCTAAGATGCTGTCGTCCCGCTTGATGAGCAACGACTTTGTAAACCAAACAGACGAAGAAATAGATAACATCCGCTGACATGCTCTTTCATAGTGCATACTAGCTACAAAAAAAAAAAGAAAAAGGCCACATGTGCTCGAGCTGCTG] [-] EMBL CNS08D4Z [CTGTTGGCCTACTGGTTCCTCAGAAGCCAGATCAAATTTATTTTGAATCGAGTTTTCATCCAGCTCTGCACCGTTTTTCCAGCCCTAAGTGAGTGTTCCGTTCGCTAGGCACCGAATCTGCCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGACAAAAACCGGGCGTAACGTCGCCCGCGGAAGTCACGTCCGATGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAGTCGCTGATGGAGCGGGTCGATGGCGTGATGATACCGGAAATGCTGTACAAAGTGTGCGGCCGCCAGATCGAGGTGCAGGAGGGCTACCCGCGCAGCATCTGCCAACGGTGTCTGTGCCAGTTGGACTGTGCGTTTAAATTTTTGAACGAGTTCCACCAGCAGGACGAACGTTTGCGCAGCTTCTACTGGAGCGGCTCCGTGGTGAAACGGCTGTATGGTTACCGCCCAGACGCACAACTACTTCTTCGGATCGCGCATCCCGTACGACAGCCTCGTCAACCAGACCACCGTCATACAGTCGAGTTCGTTCCTGCGCGTGAAGTCTGCCTACCTGGACTACCCGCTGAAGGGACAGCGTGGACGCAACATTACCGCCATCTACGTGTACGACCGGCTCGGCAGTGGCCGTGGAGGATACGCCAGCATTACGAGCGGTGGCATCGGAAAGAACTACACCCGTATCAATCTGAAGACGCAGCGTGGAAATGGCATGAACTTCCAGGTGGAAATCTACGGCCGCTAAGATGCTGTCGTCCCGCTTGATGAGCAACGACTTTGTAAACCAAACAGACGAAGAAATAGATAACATCCGCTGACATGCT ] [+] EMBL CNS08D4Y [ ATTTATTTTGAATCGAGTTTTCATCCAGCTCTGCACCGTTTTTCCAGCCCTAAGTGAGTGTTCCGTTCGCTAGGCACCGAATCTGCCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGAC AAAACCGGGCGTAACGTCGCCCGCGGAAGTCACGTCCGATGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAGTCGCTGATGGAGCGGGTCGATGGCGTGATGATACCGGAAATGCTGTACAAAGTGTGCGGCCGCCAGATCGAGGTGCAGGAGGGCTACCCGCGCA CATCTGCCAACGGTGTCTGTGCCAGTTGGACTGTGCGTTTAAATTTTTGAACGAGTTCCACCAGCAGGACGAACGTTTGCGCA CTTCTACTGGAGCGGCTCCGTGGTGAAACGGCTGTATGGTTACCGCCCAGACGCACAACTACTTCTTCGGATCGCGCATCCCGTACGACAGCCTCGTCAACCAGACCACCGTCATACAGTCGAGTTCGTTCCTGCGCGTGAAGTCTGCCTACCTGGACTACCCGCTGAAGGGACAGCGTGGACGCAACATTACCGCCATCTACGTGTACGACCGGCTCGGCAGTGGCCGTGGAGGATACGCCAGCATTACGAGCGGTGGCATCGGAAAGAACTACACCCGTATCAATCTGAAGACGCAGCGTGGAAATGGCATGAACTTCCAGGTGGAAATCTACGGCCGCTAAGATGCTGTCGTCCCGCTTGATGAGCAACGACTTTGTAAACCAAACAGACGAAGAAATAGATAACATCCGCTGACATGCTCTTTCATAGTGCATACTAGCTACAAAAAAAAAAAGAAAAAGGCCACATGTGCTCGAGCTGCTG] [-] EMBL AGA281445 [ AAGTGACTGTTCCGTTCGCTAGGCACCGAATCTGCCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGAC AAAACCGGGCGTAACGTCGCCCGCGGAAGTCACGTCCGACGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAGTCGCTGATGGAGCGGGTCGATGGCGTGATGATACCGGAAATGCTGTACA ] consensusID : consensus_6003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCGAGGAAAAGCTAAACCGGGGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCCGTGGCTTTGCCGCCCATGCACAGGCTGCCGCTGCCAGCCGTGGCTCGGCTGAAGTGCAGACGACCACCCTGCCCAACAAGCTGGTTGTGGCATCGGCCGACCCGAACGCTGCCGTGTCACGGATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGCCGATTGCCTCGGTGCGGCTCACGTCCTGCGTGCGGCCGGAGGGCTCTCCACCAAGACGGCCACCGCCTTCGGTATTACGCGCAACATTCAGCAGGCGGGTGGTAGCCTAACGACCGCGGCCGACCGTGAGCTGGTAACGTACAGCGTCGCCGTGACGAAGGATCAGCTGGAGGTGGGCCTGAAGTACCTGGAGGCGACCGCCACCGGCCAGGTGTTCAAGCCCTGGGAGCTGGCCGAGCTGACGCCCATCATCCGCAACGAGCTGGCCCGTCTGCCGGTGGAGGTGCAGGCGGTGGAGCTGCTGCACAAGGCCGCCTTTCCGCGACGGGCTGGGCAACTCCGTCTTCTGCCCCGACTATCTGGTCG] [+] EMBL BM648239 [CCGCCCACGCGTCCGCCCACGCGTCCGCCGAGGAAAAGCTAAACCGGGGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCCGTGGCTTTGCCGCCCATGCACAGGCTGCCGCTGCCAGCCGTGGCTCGGCTGAAGTGCAGACGACCACCCTGCCCAACAAGCTGGTTGTGGCATCGGCCGACCCGAACGCTGCCGTGTCACGGATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGCCGATTGCCTCGGTGCGGCTCACGTCCTGCGTGCGGCCGGAGGGCTCTCCACCAAGACGGCCACCGCCTTCGGTATTACGCGCAACATTCAGCAGGCGGGTGGTAGCCTAACGACCGCGGCCGACCGTGAGCTGGTAACGTACAGCGTCGCCGTGACGAAGGATCAGCTGGAGGTGGGCCTGAAGTACCTGGAGGCGACCGCCACCGGCCAGGTGTTCAAGCCCTGGGAGCTGGCCGAGCTGACGCCCATCATCCGCAACGAGCTGGCCCGTCTGCCGGTGGAGGTGCAGGCGGTGGAGCTGCTGCACAAGGCCGCCTTTCCGCGACGGGCTGGGCAACTCCGTCTTCTGCCCCGACTATCTGGTCG] consensusID : consensus_6003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CCGTGAAGTTTACCATCGACAAGGGTACGGTAGTGTTTATCCCGATCGCAGGTCTGCACCACGATCCACAGTACTATCCGAACCCGAGCAAGTTCGATCCGGAGCGATTCAGTGTGGAAAATCGGGACAAAATTAATCCGAACACGTACCTGCCGTTCGGCATTGGTCCGCGCAACTGTATCGGATCTCGGTTCGCTCTGATGGAGGTGAAGGCCATCATCTACTACATGTTGCGCGAGTTTTCGTTCGAACGCACACCGAACACGCAGGTGCCGCTCCGGCTAGCAAAGGGATTTGCTGGCATGCGCAGCGAAAAGGGTGTGTTTGTCGAGTTCCGGCCACGCAAGCAAGCTGCTCAGTGATCTTCCGCTGCAAGATCCTCAAAAGCAAGCCTGCTGAGAATAGGTATAAAGTATTAACATAAAGTAGCATTTAGGGAATAGACAGTGAGGCAATTTTTAATTTACAATAAAGTAATTTAAATCG] [+] EMBL BM634140 [CCGTGAAGTTTACCATCGACAAGGGTACGGTAGTGTTTATCCCGATCGCAGGTCTGCACCACGATCCACAGTACTATCCGAACCCGAGCAAGTTCGATCCGGAGCGATTCAGTGTGGAAAATCGGGACAAAATTAATCCGAACACGTACCTGCCGTTCGGCATTGGTCCGCGCAACTGTATCGGATCTCGGTTCGCTCTGATGGAGGTGAAGGCCATCATCTACTACATGTTGCGCGAGTTTTCGTTCGAACGCACACCGAACACGCAGGTGCCGCTCCGGCTAGCAAAGGGATTTGCTGGCATGCGCAGCGAAAAGGGTGTGTTTGTCGAGTTCCGGCCACGCAAGCAAGCTGCTCAGTGATCTTCCGCTGCAAGATCCTCAAAAGCAAGCCTGCTGAGAATAGGTATAAAGTATTAACATAAAGTAGCATTTAGGGAATAGACAGTGAGGCAATTTTTAATTTACAATAAAGTAATTTAAATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6003#1 ------------------------------------------------------------ consensus_6003#2 ------------------------------------------------------------ consensus_6003#0 CTGTTGGCCTACTGGTTCCTCAGAAGCCAGATCAAATTTATTTTGAATCGAGTTTTCATC 60 consensus_6003#1 ------------------------------------------------------------ consensus_6003#2 ------------------------------------------------------------ consensus_6003#0 CAGCTCTGCACCGTTTTTCCAGCCCTAAGTGAGTGTTCCGTTCGCTAGGCACCGAATCTG 120 consensus_6003#1 ----CCGCCCACGCGTCCGCCCACGCGTCCGCCGAGGAAAAGCTAAACCGGGGTTCAGCA 56 consensus_6003#2 ------------------------------------------------------------ consensus_6003#0 CCTCTTCCACAGGCCGTCATGAGCAAAACCGCTGCGACAAAACCGGGCGTAACGTCGCCC 180 consensus_6003#1 GAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCCGTGGCTTTG 116 consensus_6003#2 ------------------------------------------------------------ consensus_6003#0 GCGGAAGTCACGTCCGATGCGTTTTGTCGAATATGTTTGCTGAAGCGGCCCCACCTGAAG 240 consensus_6003#1 CCGCCCATGC-ACAGGCTGCCGCTGCCAGCCGTGGCTCGGCTGAAGTGCAGACGACCACC 175 consensus_6003#2 ------CCGT-GAAGTTTACCATCGACAAGGGTACGGTAGTGTTTATCCCGATCGCAGGT 53 consensus_6003#0 TCGCTGATGGAGCGGGTCGATGGCG-TGATGATACCGGAAATGCTGTACAAAGTGTGCGG 299 * * * * * * * consensus_6003#1 CTGCCCAACAAGCTGGTTGTGGCATCGGCCGACCCGAACGCTGCCGTGTCACGGATTTCC 235 consensus_6003#2 CTGCACCACGATC---------CACAGTACTATCCGAACCCGAGCAAGTTC--GATCCGG 102 consensus_6003#0 CCGCCAGATCGAGGTGCAGGAGGGCTACCCGCGCAGCATCTGCCAACGGTGTCTGTGCCA 359 * ** * * * * * * * consensus_6003#1 ATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGCCGATTGCCTCGGTGCGGCTCACGTC 295 consensus_6003#2 AGCGATT-CAGTGTGGAAAATCGGGACAAAATT----AATCCGAACACGTACCTGCCGTT 157 consensus_6003#0 GTTGGACTGTGCGTTTAAATTTTTGAACGAGTTCC--ACCAGCAGGACGAACGT-TTGCG 416 * * * * * * * * * * * consensus_6003#1 CTGCGTGCGGCCGGAGGGCTCTCCACCAAGACGGC--CACCGCCTTCGGTATTACGCGCA 353 consensus_6003#2 CGGCATTGGTCCGCGCAACTGTATCGGATCTCGGTT-CGCTCTGATGGAGGTGAAGGCCA 216 consensus_6003#0 CAGCTTCTACTGGAGCGGCTCCGTGGTGAAACGGCTGTATGGTTACCGCCCAGACGCACA 476 * ** * * ** *** * * * ** consensus_6003#1 ACATTCAGCAGGCGGGTGGTAGCCT-AACGACCGCGGCCGACCGTGAGCTGGTAACGTAC 412 consensus_6003#2 TCATCTACTACATGTTGCGCGAGTT-TTCGTTCG-AACGCACACCGAACACGCAG-GTGC 273 consensus_6003#0 ACTACTTCTTCGGATCGCGCATCCCGTACGACAGCCTCGTCAACCAGACCACCGTCATAC 536 * * ** * * * * * consensus_6003#1 ---------AGCGTCGCCGTGACGAAG--GATCAGCTGGAGGTGGGCCTGAAGTACCTGG 461 consensus_6003#2 ---------CGCTCCGGCTAGCAAAGG--GATTTGCTGGCATGCGCAGCGAAAAGGGTGT 322 consensus_6003#0 AGTCGAGTTCGTTCCTGCGCGTGAAGTCTGCCTACCTGGACTACCCGCTGAAGGGACAGC 596 * * * * * * **** *** * consensus_6003#1 AGGCGACCGCCACCGGCCAGGTGTTCAAGCCCTGGGAGCTGGCCGAGCTGACGCC-CATC 520 consensus_6003#2 GTTTGTCGAGTTCCGGCCACGCAAGCAAGCT------GCTCAGTGATCTTCCGCTGCAAG 376 consensus_6003#0 GTGGACGCAACATTACCGCCATCTACGTGTACGACCGGCTCGGCAG--TGGCCGTGGAGG 654 * * * *** * * * consensus_6003#1 ATCCGCAACGAGCTGGCCCGTCTGCCGGTGGAGGTGCAGGCGGTGGAGCTGCTGCACAAG 580 consensus_6003#2 ATCCTCAA-AAGCAAGCCTGCT---------GAGAATAGGTA-TAAAGTATTAACATAAA 425 consensus_6003#0 ATACGCCAGCATTACGAGCGGTGGCAT---CGGAAAGAACTACACCCGTATCAATCTGAA 711 ** * * * * * * * * * consensus_6003#1 GCCGCCTTTCCGCGACGG-GCTG---GGCAACTCCGTCTTCTGCCCCGACTATCT--GGT 634 consensus_6003#2 GTAGCATTTAGGGAATAG-ACAGTGAGGCAATTTTTAATTTACAATAAAGTAATTTAAAT 484 consensus_6003#0 GACGCAGCGTGGAAATGGCATGAACTTCCAGGTGGAAATCTACGGCCGCTAAGATGCTGT 771 * ** * * * ** * * * * * consensus_6003#1 CG---------------------------------------------------------- 636 consensus_6003#2 CG---------------------------------------------------------- 486 consensus_6003#0 CGTCCCGCTTGATGAGCAACGACTTTGTAAACCAAACAGACGAAGAAATAGATAACATCC 831 ** consensus_6003#1 ------------------------------------------------------------ consensus_6003#2 ------------------------------------------------------------ consensus_6003#0 GCTGACATGCTCTTTCATAGTGCATACTAGCTACAAAAAAAAAAAGAAAAAGGCCACATG 891 consensus_6003#1 -------------- consensus_6003#2 -------------- consensus_6003#0 TGCTCGAGCTGCTG 905 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||