These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1667 fasta sequence [CCGCGGACGCGTGGGCCGGCTCGGCCGCACCCGGCGCAGAGCGCCGGAGCTCCAGTGGGCAGTAGGTTAAGGAGAGGCAGCCTACTCGACGGGTGATGTGATGTGGTGTGTGCGAGAGCGGCTGTCGCCTGAAGGGAGCGAGTTGTGCGCTTTAATGGCATGAGATCCCTTGGACCGCGGAAGCATTAAGCATTAATTAATTAAACCTCGCGCTTAATTAATGAAGCGTCTTACAATGCGGACGATACGTTCCTGCAAATTGCAATAATTCAACATCGAGTGTGTACAATCGAGTAGTTTGGGGCAGCGAAACGCTACAGCCTCTTGAGTGTCCTTTAAAATTGGAATGCTTCGGAAAGTATCATTCGCTTGCACTCCATCCCATTCAACAGTCTTCTGTCCAGCTGTCGCTGTCAACCAGAGGGAGGTGAAAATTGTGCTCTAATCATCGCAAAAGCAGAACCTCCTAAAAAA-------AGACACACACGCAAGCGGAAAAGATAAAAGGCTTCGGGCAATGGCAACCGACGGGACAGCTG-GAGTACTTTTGTGCTCATCCGGACCGTACACCGTCACCGGCGG---TGGT-GGT-GGT-GGT-GGTTTGAAATAAGAAGCTCAC-TTTCCTTCCAACCAATAAGGACCAAAGCAGAGACAGTCACACAAAGTACAAAGACAGCACGAATTCGACCTGACACAAGGAGGCAGCTGGCAGGACCGGGAATTGGAACGTACAATAATTGCAATTAAATGCAACGGCATCCGCTCGGCTAATCCTGTTTTCCCGAACCCGGTCCAATAGTCCGGCGCTCCCACCCGGTGCCACACCGAAGTCAGTGGCTACCAGTGTGTGTATGTGTAGGATGAAGCCCAAACAAAGCGGGCGGCCAACAGCAACCGATGTACCACGACGCAACTAGTCAACCGAGCAGCCACTGACACAGAGGCCGGCTCCTCAAGACAAGACAAATCCGGAGTCGCTTTTTAAACTTGAATTTCGTTTTAATTCCATTCACTCCTCCCGCCATGCCACGCTTCCGTGGGCAGCTAAGCATCGAGTGTCGCTTCATCTACTCCCTACCCACCGCTTCCACCGTACGACCGCAGCGCCATCTCGCGTCAAACGAGCGCAAGGCTCGCTTCGATCGGTACCAGGCGGTACTACCGCAACACACTTTCACGCCCGTCGAGCGACTACTCTTCGCGCACTCTTCCTTCCTCCTTTTTGCTGCATGATTCTCGTCCTTTTGCTGACGCCTTTCTAATTGCATGCTTTTCATACAGTTGCATTGATTTTAATTTTGAATAGATACAAACCGCACACCCGCGTTGCATCACGCGTCGTACGACGGAAAGGGTTGATGGCGCCTTAGGCACGAAATCAACTAAAACCCCGACGGCCGACATGGTGCGGGATGGTGTTTGAAAATAATTTATTTAATACTCCTTCGTTTGCATGCACTTTGTAAACAGAAAAGAAACACCAAGAGCACAACAACTAACGATACGTTGAGGACTATGGCAGTAGTTTTGATAATGAAGCTGTAGAGCGCATCAACAGATTTTTTCTTCGGGCGTTTGCTTCCGCTGATGAGGTAGAATGATCTAGGCATGGTGTTTTTTAGCTCAGTGCTCACCTTTCATACTGCTTACCACCAGTATCCCGGCTTGGGTTC] [+] EMBL BM583677 [CCGCGGACGCGTGGGCCGGCTCGGCCGCACCCGGCGCAGAGCGCCGGAGCTCCAGTGGGCAGTAGGTTAAGGAGAGGCAGCCTACTCGACGGGTGATGTGATGTGGTGTGTGCGAGAGCGGCTGTCGCCTGAAGGGAGCGAGTTGTGCGCTTTAATGGCATGAGATCCCTTGGACCGCGGAAGCATTAAGCATTAATTAATTAAACCTCGCGCTTAATTAATGAAGCGTCTTACAATGCGGACGATACGTTCCTGCAAATTGCAATAATTCAACATCGAGTGTGTACAATCGAGTAGTTTGGGGCAGCGAAACGCTACAGCCTCTTGAGTGTCCTTTAAAATTGGAATGCTTCGGAAAGTATCATTCGCTTGCACTCCATCCCATTCAACAGTCTTCTGTCCAGCTGTCGCTGTCAACCAGAGGGAGGTGAAAATTGTGCTCTAATCATCGCAAAAGCAGAACCTCCTAAAAAA AGACACACACGCAAGCGGAAAAGATAAAAGGCTTCGGGCAATGGTAACCGACGGGACAGCTGTGAGTACTTTTGTGCTCATCCGGACCGTACACCGTCACCGGCGGTGTTGGTGGGTGGGTGGGTGGGTTTGAAATAAGAAGCTCACTTTTCCTTCCAACCAATAAGGACCAAAGCAGAGACAGTCACACAAAGTACAAAGACAGCACGAATTCGACCTGACACAAGGAGGCAGCTGGCAGGga ] [+] EMBL BX628836 [ CGGGTGGTGTGATGTGGTGTGTGCGCGAGCGGCTGTCGCCTGAAGGGAGCGAGTTGTGCGCTTTAATGGCATGAGATCCCTTAGACCGCGGAAGCA C TAATTAATTAAACCTCGCGCTTAATTAATGAAGCGTCTTACAATGCGGACGATACGTTCCTGCAAATTGCAATAATTGAACATCAAGTGTGTAAAATCGAGTAGTTCGGGGCAGCGAAACGCTACAGCCTCTTGAGTGTCCTTTAAAATTGGAATGCTTCGGAAAGTATCATTCGCTTGCACTCCATCCCATTCAACAGTCTTCTGTCCAGCTGTCGCTGTCAACCAGAGGGGGGCGAAAATTGTGCTCTAATCATCGCAAAAGCAGAACCTCCTAAAAAAGACACACACACACACACGCAAGCGGAAAAGATAAAAGGCTTCGGGCAATGGCAACCGACGGGACAGCTG GAGTACTTTTGTGCTCATCCGGACCGTACACCGTCATCTGCGG TGGT GGT GGT GGT GGTTTGAAATAAGAAGCTCAC TTTCCTTCCAACCAATAAGGACCAAAGCAGAGACAGTCACACAAAGTACAAAGACAGCACGAATTCGACCTGACACAAGGAGGCAGCTGGCAGGACCGGGAATTGGAACGTACAATAATTGCAATTAAATGCAACGGCATCCGCTCGGCTAATCCTGTTTTCCCGAACCCGGTCCAATAGTCCGGCGCTCCCACCCGGTGCCACACCGAAGTCAGTGGCTACCAGTGTGTGT ] [+] EMBL BX626218 [ AGATAAAAGGCTTCGGGCNATGGCAACCGACGAGACAGCTG GAGTACTTTTGTGCTCATCCGGACCGTACACCGTCACCGGCGG TGGT GGT GGT GGT GGTTTGAAATAAGAAGCTCAC TTTCCTTCCAACCAATAAGGACCAAAGCAGAGACAGTCACACAAAGTACAAAGACAGCTCGAATTCGACCTGACACAAGGAGGCAGCTGGCAGGACCGGGAATTGGAACGTACAATAATTGCAATTAAATGCAACGGCATCCGCTCGGCTAATCCTGTTTTCCCGAACCCGGTCCAATAGTCCGGCGCTCCCACCCAGTGCCACACCGAAGTCAGTGGCTACCAGTGTGTGTATGTGTAGGATGAAGCCCAAACAAAGCGGGCGGCCAACAGCAACCGATGTACCACGACGCAACTAGTCAACCGAGCAGCCACTGACACAGAGGCCGGCTCCTCAAGACAAGACAAATCCGGAGTCGCTTTTTAAACTTGAATTTCGTTTTAATTCCATTCACTCCTCCCGCCATGCCACGCTTCCGTGGGCAGCTAAGCATCGAGTGTCGCTTCATCTACTCCCTACCCACCGCTTCCACCGTACGACCGCAGCGCCATCTCGCGTCAAACGAGCGCAAGGCTCGCTTCGATCGGTACCAGGCGGTACTACCGCAACACACTTTCACGCCCGTCGAGCGACTA ] [+] EMBL BM592747 [ ccgGCAGCGCCATCTCGCGTCAAACGAGCGCAAAGCTCGCTTCGATCGGTACCAGGCGGTACTACCGCAACACACTTTCACGCCCGTCGAGCGACTACTCTTCGCGCACTCTTCCTTCCTCCTTTTTGCTGCATGATTCTCGTCCTTTTGCTGACGCCTTTCTAATTGCATGCTTTTCATACAGTTGCATTGATTTTAATTTTGAATAGATACAAACCGCACACCCGCGTTGCATCACGCGTCGTACGACGGAAAGGGTTGATGGCGCCTTAGGCACGAAATCAACTAAAACCCCGACGGCCGACATGGTGCGGGATGGTGTTTGAAAATAATTTATTTAATACTCCTTCGTTTGCATGCACTTTGTAAACAGAAAAGAAACACCAAGAGCACAACAACTAACGATACGTTGAGGACTATGGCAGTAGTTTTGATAATGAAGCTGTAGAGCGCATCAACAGATTTTTTCTTCGGGCGTTTGCTTCCGCTGATGAGGTAGAATGATCTAGGCATGGTGTTTTTTAGCTCAGTGCTCACCTTTCATACTGCTTACCACCAGTATCCCGGCTTGGGTTC] consensusID : consensus_6010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGCGGACGCGTGGGCGCGAAACGCGGAAGTATTAAGCACTAATTAATTAAACCTCGCGCTTAATTAATGAAGCGTCTTACAATGCGGACGATACGTTCCTGCAAATTGCAATAATTGAACATCGAGTGTGTACAATCGAGTAGTTCGTGGCAGCGAAACACTACAGCCTCTTGAGTGTCCTTTAAAATTGGAATGCTTCGGAAAGTATCATGCGTTTGCACTCCATCCCATTCAACAGTCTTCTGTCCAGCTGTCGCTGTCAACCAGAGGGGGGCGAAAATTGTGCTCTAATCATCGCAAAAGCAGAACCTCCTAAAAAAGACACACACACACGCAAGCGGAAAAGATAAAAGGCTTCGGGCAATGGCAACCGACGAGACAGCTGGAGTACTTTTGTGCTCATCCGGACCGTACACCGTCACCGGCGGTGGTGGTGGGTGGTGGTTTGAAATAAGAAGCTCACTTTCCTTCCAACCAATAAGGACCAAAGCAGAGACAGTCACACAAAGTACAAAGACAGCTCGAATTCGACCTGACACAAGGAGGCAGCTGGCAGGACCGGGAATTGGAACGTACAATAATTGCAATTAAATG] [+] EMBL BM611461 [CCGCGGACGCGTGGGCGCGAAACGCGGAAGTATTAAGCACTAATTAATTAAACCTCGCGCTTAATTAATGAAGCGTCTTACAATGCGGACGATACGTTCCTGCAAATTGCAATAATTGAACATCGAGTGTGTACAATCGAGTAGTTCGTGGCAGCGAAACACTACAGCCTCTTGAGTGTCCTTTAAAATTGGAATGCTTCGGAAAGTATCATGCGTTTGCACTCCATCCCATTCAACAGTCTTCTGTCCAGCTGTCGCTGTCAACCAGAGGGGGGCGAAAATTGTGCTCTAATCATCGCAAAAGCAGAACCTCCTAAAAAAGACACACACACACGCAAGCGGAAAAGATAAAAGGCTTCGGGCAATGGCAACCGACGAGACAGCTGGAGTACTTTTGTGCTCATCCGGACCGTACACCGTCACCGGCGGTGGTGGTGGGTGGTGGTTTGAAATAAGAAGCTCACTTTCCTTCCAACCAATAAGGACCAAAGCAGAGACAGTCACACAAAGTACAAAGACAGCTCGAATTCGACCTGACACAAGGAGGCAGCTGGCAGGACCGGGAATTGGAACGTACAATAATTGCAATTAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6010#0 CCGCGGACGCGTGGGCCGGCTCGGCCGCACCCGGCGCAGAGCGCCGGAGCTCCAGTGGGC 60 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 AGTAGGTTAAGGAGAGGCAGCCTACTCGACGGGTGATGTGATGTGGTGTGTGCGAGAGCG 120 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 GCTGTCGCCTGAAGGGAGCGAGTTGTGCGCTTTAATGGCATGAGATCCCTTGGACCGCGG 180 consensus_6010#1 -----------------------------CCGCGGACGCGTGGG----CGCGAAACGCGG 27 * ** ** * * * * ***** consensus_6010#0 AAGCATTAAGCATTAATTAATTAAACCTCGCGCTTAATTAATGAAGCGTCTTACAATGCG 240 consensus_6010#1 AAGTATTAAGCACTAATTAATTAAACCTCGCGCTTAATTAATGAAGCGTCTTACAATGCG 87 *** ******** *********************************************** consensus_6010#0 GACGATACGTTCCTGCAAATTGCAATAATTCAACATCGAGTGTGTACAATCGAGTAGTTT 300 consensus_6010#1 GACGATACGTTCCTGCAAATTGCAATAATTGAACATCGAGTGTGTACAATCGAGTAGTTC 147 ****************************** **************************** consensus_6010#0 GGGGCAGCGAAACGCTACAGCCTCTTGAGTGTCCTTTAAAATTGGAATGCTTCGGAAAGT 360 consensus_6010#1 GTGGCAGCGAAACACTACAGCCTCTTGAGTGTCCTTTAAAATTGGAATGCTTCGGAAAGT 207 * *********** ********************************************** consensus_6010#0 ATCATTCGCTTGCACTCCATCCCATTCAACAGTCTTCTGTCCAGCTGTCGCTGTCAACCA 420 consensus_6010#1 ATCATGCGTTTGCACTCCATCCCATTCAACAGTCTTCTGTCCAGCTGTCGCTGTCAACCA 267 ***** ** *************************************************** consensus_6010#0 GAGGGAGGTGAAAATTGTGCTCTAATCATCGCAAAAGCAGAACCTCCTAAAAAAAG---A 477 consensus_6010#1 GAGGGGGGCGAAAATTGTGCTCTAATCATCGCAAAAGCAGAACCTCCTAAAAAAGACACA 327 ***** ** ********************************************* * consensus_6010#0 CACACACGCAAGCGGAAAAGATAAAAGGCTTCGGGCAATGGCAACCGACGGGACAGCTGG 537 consensus_6010#1 CACACACGCAAGCGGAAAAGATAAAAGGCTTCGGGCAATGGCAACCGACGAGACAGCTGG 387 ************************************************** ********* consensus_6010#0 AGTACTTTTGTGCTCATCCGGACCGTACACCGTCACCGGCGGTGGTGGTGG-TGGTGGTT 596 consensus_6010#1 AGTACTTTTGTGCTCATCCGGACCGTACACCGTCACCGGCGGTGGTGGTGGGTGGTGGTT 447 *************************************************** ******** consensus_6010#0 TGAAATAAGAAGCTCACTTTCCTTCCAACCAATAAGGACCAAAGCAGAGACAGTCACACA 656 consensus_6010#1 TGAAATAAGAAGCTCACTTTCCTTCCAACCAATAAGGACCAAAGCAGAGACAGTCACACA 507 ************************************************************ consensus_6010#0 AAGTACAAAGACAGCACGAATTCGACCTGACACAAGGAGGCAGCTGGCAGGACCGGGAAT 716 consensus_6010#1 AAGTACAAAGACAGCTCGAATTCGACCTGACACAAGGAGGCAGCTGGCAGGACCGGGAAT 567 *************** ******************************************** consensus_6010#0 TGGAACGTACAATAATTGCAATTAAATGCAACGGCATCCGCTCGGCTAATCCTGTTTTCC 776 consensus_6010#1 TGGAACGTACAATAATTGCAATTAAATG-------------------------------- 595 **************************** consensus_6010#0 CGAACCCGGTCCAATAGTCCGGCGCTCCCACCCGGTGCCACACCGAAGTCAGTGGCTACC 836 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 AGTGTGTGTATGTGTAGGATGAAGCCCAAACAAAGCGGGCGGCCAACAGCAACCGATGTA 896 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 CCACGACGCAACTAGTCAACCGAGCAGCCACTGACACAGAGGCCGGCTCCTCAAGACAAG 956 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 ACAAATCCGGAGTCGCTTTTTAAACTTGAATTTCGTTTTAATTCCATTCACTCCTCCCGC 1016 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 CATGCCACGCTTCCGTGGGCAGCTAAGCATCGAGTGTCGCTTCATCTACTCCCTACCCAC 1076 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 CGCTTCCACCGTACGACCGCAGCGCCATCTCGCGTCAAACGAGCGCAAGGCTCGCTTCGA 1136 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 TCGGTACCAGGCGGTACTACCGCAACACACTTTCACGCCCGTCGAGCGACTACTCTTCGC 1196 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 GCACTCTTCCTTCCTCCTTTTTGCTGCATGATTCTCGTCCTTTTGCTGACGCCTTTCTAA 1256 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 TTGCATGCTTTTCATACAGTTGCATTGATTTTAATTTTGAATAGATACAAACCGCACACC 1316 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 CGCGTTGCATCACGCGTCGTACGACGGAAAGGGTTGATGGCGCCTTAGGCACGAAATCAA 1376 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 CTAAAACCCCGACGGCCGACATGGTGCGGGATGGTGTTTGAAAATAATTTATTTAATACT 1436 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 CCTTCGTTTGCATGCACTTTGTAAACAGAAAAGAAACACCAAGAGCACAACAACTAACGA 1496 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 TACGTTGAGGACTATGGCAGTAGTTTTGATAATGAAGCTGTAGAGCGCATCAACAGATTT 1556 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 TTTCTTCGGGCGTTTGCTTCCGCTGATGAGGTAGAATGATCTAGGCATGGTGTTTTTTAG 1616 consensus_6010#1 ------------------------------------------------------------ consensus_6010#0 CTCAGTGCTCACCTTTCATACTGCTTACCACCAGTATCCCGGCTTGGGTTC 1667 consensus_6010#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||