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Anopheles gambiae
cluster # 6021 cluster # 6021       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6021#0 length = 833 sequences # 2  
consensus_6021#1 length = 563 sequences # 2  
consensus_6021#2 length = 299 sequences # 1  

consensusID : consensus_6021#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 833
fasta sequence
                              [CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAATAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCAAGAATGATTGTAGTGCAAGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTGTGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGC-AACCTTAAGCAAGCCAACAAAGCATTAGGTGGAGAAGTAAATGTGTGTGAAATGAAAGGATAATGAAGAAAATCACAATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAATGCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCT-AAAACTGAGGGGGAAAACATCTGACTTCCTTCCTCATCTAACATGTGTACGTC---TT-GCAAACTACAAT-TAGACCACCACATTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAACAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCG]

[+] EMBL BM591309             [CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAATAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCAAGAATGATTGTAGTGCAAGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTGTGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGC AACCTTAAGCAAGCCAACAAAGCATTAGGTGGAGAAGTAAATGTGTGTGAAATGAAAGGATAATGAAGAAAATCACAATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAATGCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCT AAAACTGAGGGGGAAAACATCTGACTTCCTTCCTCATCTAACATGTGTACGTC   TT GCAAACTACAAT TAGACCACCACAT                                                                                                                                          ]
[+] EMBL BX620232             [                                                                                                                                                                                                                                                                            CTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAGAATCAAACCTTAAGCAAGCCAACAAAGCATTAGGTGGAGAAGTAAATGTGTTTGAAATGAAAGGATAATGAAGAAAATCACAATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAATGCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAA  TAAAATGTAGAGCAACAAACTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAACAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCG]


>consensus_6021#0 CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAA TAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCA AGAATGATTGTAGTGCAAGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTGT GGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATG CTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAG GCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGCAACCTTAAGCAAGCCA ACAAAGCATTAGGTGGAGAAGTAAATGTGTGTGAAATGAAAGGATAATGAAGAAAATCAC AATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAAT GCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACC ACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAA ATGACGTAGTGAGCTAAAACTGAGGGGGAAAACATCTGACTTCCTTCCTCATCTAACATG TGTACGTCTTGCAAACTACAATTAGACCACCACATTAGTATTTAGCTAGCTACAAGGACT TGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACA ACAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCG



consensusID : consensus_6021#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence
                              [AGCTCGTAGGCAGAATCCGCCGANGCTTAGGTGT-AAAAATGGGGAC-CAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAGCCAACGAAAGCATTAGGTTGAGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAGAGATCGACAATTATCGCTAGATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAGAAACTGCGAATGCGTAACACAGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNCCAATTTTTATAGGGCAAAGAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAATA]

[+] EMBL BX466478             [AGCTCGTAGGCAGAATCCGCCGANGCTTAGGTGT AAAAATGGGGAC CAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAGCCAACGAAAGCATTAGGTTGAGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAGAGATCGACAATTATCGCTAGATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAGAAACTGCGAATGCGTAACACAGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNCCAATTTTTATAGGGCAAAGAACCAC                                                                                                                                           ]
[+] EMBL BX614953             [                 tgaaatctCTTAGGTGTAAAAAATGGGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGAGCGACAATTCTTCTGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATG AAGAATCAAACCTTAAGCAAGCCAAC AAAGCATTAGGTGGAGAAGTA AATGTGTTTGAAATGAAAGGATAATGAAGAA A ATC ACAATTATCGCTA ATGGAGCATCTACAAGGTGAATGCGAC TCCGTTGGA AGAAACTGCGAATGCGTAACAC GTAGCCAATAA A  TATA A T TTATTGAATGT CCCAATTTTT T GGGCAAA AACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAATA]


>consensus_6021#1 AGCTCGTAGGCAGAATCCGCCGANGCTTAGGTGTAAAAATGGGGACCAGCTTGAATGAAC GGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGA GCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTA TCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAGCCAACGAAAGCATTAGGTTG AGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAGAGATCGACAATTATCGCTAG ATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAGAAACTGCGAATGCGTAACAC AGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNCCAATTTTTATAGGGCAAAGAA CCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGA AAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAAC ATGTGTACGTCACATTAGCAATA



consensusID : consensus_6021#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence
                              [ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAACAAACTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCGGTGCTATTGAGGAGTAATGAAAAAAGAATGTAAATTCTACAAAATATCAAAATAACAGGCAACCGTTGCGCGATTGTAAGAATGCTGATGAATTGCAGGCAC]

[-] EMBL AGA282401            [ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAACAAACTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCGGTGCTATTGAGGAGTAATGAAAAAAGAATGTAAATTCTACAAAATATCAAAATAACAGGCAACCGTTGCGCGATTGTAAGAATGCTGATGAATTGCAGGCAC]


>consensus_6021#2 ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAACAAACT AGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAA GTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATAATGGCGTGAA GACAGCGATACAGTTCGGTGCTATTGAGGAGTAATGAAAAAAGAATGTAAATTCTACAAA ATATCAAAATAACAGGCAACCGTTGCGCGATTGTAAGAATGCTGATGAATTGCAGGCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6021#0      CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAA 60
consensus_6021#1      ------------------------------------------------------------
consensus_6021#2      ------------------------------------------------------------
                                                                                  

consensus_6021#0      TAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCA 120
consensus_6021#1      ------------------------------------------------------------
consensus_6021#2      ------------------------------------------------------------
                                                                                  

consensus_6021#0      AGAATGATTGTAGTGCA-AGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTG 179
consensus_6021#1      -----------AGCTCGTAGGCAGAATCCGCCGANG---CTTAGGTGTAAAAA-----TG 41
consensus_6021#2      ------------------------------------------------------------
                                                                                  

consensus_6021#0      TGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTAT 239
consensus_6021#1      GGGAC-CAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTAT 100
consensus_6021#2      ------------------------------------------------------------
                                                                                  

consensus_6021#0      GCTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAA 299
consensus_6021#1      GCTGAAGCGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAA 160
consensus_6021#2      ------------------------------------------------------------
                                                                                  

consensus_6021#0      GGCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGC--AACCTTAAGCAAG 357
consensus_6021#1      GGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAG 220
consensus_6021#2      -----ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAA- 54
                           ** * ***  ** **  *     *   * *    *  *    **  *  ***** 

consensus_6021#0      CCAAC-AAAGCATTAGGTGGAGAAGTA-AATGTGTGTGAAATGAAAGGATAATGAAGAAA 415
consensus_6021#1      CCAACGAAAGCATTAGGTTGAGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAG 280
consensus_6021#2      CAAAC--TAGTATTTAGCTAGCTACAAGGACTTGCATTGTG-GTAAGGGCGATGAATAGG 111
                      * ***   ** ***  *      *  *  *  **  *     *  ***   ***** *  

consensus_6021#0      A---TCACAATTATCGCTA-ATGGAGCATCTACAAGGTGAATGCGAC-TCCGTTGGA-AG 469
consensus_6021#1      AGATCGACAATTATCGCTAGATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAG 340
consensus_6021#2      ACGACG-CAAGTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATA 170
                      *      *** *  ** **   *    *  ****      ***   *      * *    

consensus_6021#0      AAACTGCGAATGC-GTAACAC-GTAGCCAATAAA---TATAA---TTTATTGAATGTCCC 521
consensus_6021#1      AAACTGCGAATGC-GTAACACAGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNC 399
consensus_6021#2      ATGGCGTGAAGACAGCGATACAGT--TCGGTGCTAT-TGAGGAGTAATGAAAAAAGAATG 227
                      *    * ***  * *  * ** **   *  *      *         *    ** *    

consensus_6021#0      AATTTTTT---GGGCAAA-AACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCA 577
consensus_6021#1      CAATTTTTATAGGGCAAAGAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCA 459
consensus_6021#2      TAAATTCT-----ACAAAATATCA--AAATAACAGGCAACCGTTGCGCGATTG-----TA 275
                       *  ** *      ****  * **  ****   **  *  ***   *   **       *

consensus_6021#0      AACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAA-CTGAGGGGGAAAACATC 636
consensus_6021#1      AACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATC 519
consensus_6021#2      AGAATGCTGATGAATTGCAGGCAC------------------------------------ 299
                      *  ** ** * **** * **  *                                     

consensus_6021#0      TGACTTCCTTCCTCATCTAACATGTGTACGTCTTGCAAACTACAATTAGACCACCACATT 696
consensus_6021#1      TGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAATA---------------- 563
consensus_6021#2      ------------------------------------------------------------
                                                                                  

consensus_6021#0      AGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAA 756
consensus_6021#1      ------------------------------------------------------------
consensus_6021#2      ------------------------------------------------------------
                                                                                  

consensus_6021#0      GTGACGATACTAGCGCAAGATACAACAGTGATGAACCACTAACTAGGATAATGGCGTGAA 816
consensus_6021#1      ------------------------------------------------------------
consensus_6021#2      ------------------------------------------------------------
                                                                                  

consensus_6021#0      GACAGCGATACAGTTCG 833
consensus_6021#1      -----------------
consensus_6021#2      -----------------
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)