These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [CCGGTCCGTGCATGTGCGTGCGTCGTGATAGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGTCGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGTTGCAACTAGAGCAGCTACATCCACTACTCCGGTATCAACCACTTTCAGCCCGCGAGTACATCCACAAACTCCGTCATCTACGAATTCAGCTACGAGTACATCCAACAACTTCCGTCATCTAACAAAATCAGGCTTACCAAGTACATCAACCAAGGCTCGGTCTTTCTACAAAGGCTTCTCAAGGCACTAACCCCAAGGGAACCATCCAACGAACCCCTTACAAACTTACTTAAGGGTCCCGGGACCAACCCCAAACGGGGGAGATTTGGAAACACCTTTTTTAACCCAAGTTCCAGGTTTCTTTTTTTCCACCCAACAAAAACCGGGGGGCCCGAAACCGGTTCCCCCACCCGGAAACCCCGGTCCTTGGGGGCCGTGGCCCCAAATTAAACCCGGTTCATCCTAAATT] [+] EMBL BM657725 [CCGGTCCGTGCATGTGCGTGCGTCGTGATAGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGTCGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGTTGCAACTAGAGCAGCTACATCCACTACTCCGGTATCAACCACTTTCAGCCCGCGAGTACATCCACAAACTCCGTCATCTACGAATTCAGCTACGAGTACATCCAACAACTTCCGTCATCTAACAAAATCAGGCTTACCAAGTACATCAACCAAGGCTCGGTCTTTCTACAAAGGCTTCTCAAGGCACTAACCCCAAGGGAACCATCCAACGAACCCCTTACAAACTTACTTAAGGGTCCCGGGACCAACCCCAAACGGGGGAGATTTGGAAACACCTTTTTTAACCCAAGTTCCAGGTTTCTTTTTTTCCACCCAACAAAAACCGGGGGGCCCGAAACCGGTTCCCCCACCCGGAAACCCCGGTCCTTGGGGGCCGTGGCCCCAAATTAAACCCGGTTCATCCTAAATT] consensusID : consensus_6031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 702 fasta sequence [CCGGTGCGTGCGTCGTGAT---AGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGTCGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGCCGCAACTAGAGCAGCTACATCCACTACTCCGGTATCAACTACTTCAGCCGCGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCAACAAGCTCGTCTTCTACAACGCTCTCAAGCACTACCCAAGGACCATCAACGACCCCTACGACTACTACGTCCAGCACAACCACAACGGCGAGTTCGACCACTTCTACCACATCCAGCTCTTCTTCCACCACAGACCGGGGCCGACCGTCGCCACC] [+] EMBL BM613914 [CCGGTGCGTGCGTCGTGAT AGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGTCGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGTTGCAACTAGAGCAGCTACATCCACTACTCCGGTATCAACCACTTCAGCCGCGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCCACAACTCCGTCATCTACGACATCAGCTACGAGTACATCAACAAGCTCGTCTTCTACAACGCTCTCAAGCACTACCCAAGGACCATCAACGACCCCTACGACTACTACGTCCAGCACAACCACAACGGCGAGTTCGACCACTTCTACCACATCCAGCTCTTCTTCCACCACAGACCGGGGCCGACCGTCGCCACC] [+] EMBL BX628419 [ CGTGCGCCGTGATAGCAGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGCAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCGCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGACGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGCCGCAACTAGAGCAGCTACATCCACTACTCCGATATCAACTACTTCAGCCGCGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCAACAAGCT ] [+] EMBL BM606179 [ TCCCAGTCCACCACCACGACGCCGGCCGCAACTAGAGCAGCCACATCCACTACTCCGGTATCAACTACTTCAGCCGCGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCAACAAGCTCGTCTTCTACAACGCTTTCAAGCACTACCCAAGGACC ] consensusID : consensus_6031#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [AGAATCGGCACGAGGGTNATAAATGAAGCGTCCCCGACCGCCGCCACGTTGAAAGGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGACCACAACGACTTTCACGGACAACGGTTTCACCAGCGACGAAACCTTTGAGCACTGCTTTCAGTTTCCCAGTCACCACGGAACGACGCCAGGCCGCAAACTAAGAGACAGCTAACATTCACTAAATTCCGGNATATCAACTACTTCAGNGCCGCGGAGTACATTCACAAACTCCCGGGTCATTCTAACGACTTCAGGCTACGAGGTACATCCACAAACTTCCGTCATCTACGAACTTTTCAAGCTTACAGAAGTTACCATTCAAGCAAGGCTCGTTCTTCTACAACGCTTTCACATGCACTACCCAAGGACCATCAAACGAACCCTTAACGACTTACTTAACGTTTCAGNCGACGAACCACAANGTGGCGAAGGTTCCGAACCACATTCTTACACACATTCCNAGGCTCCTTTCTT] [+] EMBL BX469660 [AGAATCGGCACGAGGGTNATAAATGAAGCGTCCCCGACCGCCGCCACGTTGAAAGGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGACCACAACGACTTTCACGGACAACGGTTTCACCAGCGACGAAACCTTTGAGCACTGCTTTCAGTTTCCCAGTCACCACGGAACGACGCCAGGCCGCAAACTAAGAGACAGCTAACATTCACTAAATTCCGGNATATCAACTACTTCAGNGCCGCGGAGTACATTCACAAACTCCCGGGTCATTCTAACGACTTCAGGCTACGAGGTACATCCACAAACTTCCGTCATCTACGAACTTTTCAAGCTTACAGAAGTTACCATTCAAGCAAGGCTCGTTCTTCTACAACGCTTTCACATGCACTACCCAAGGACCATCAAACGAACCCTTAACGACTTACTTAACGTTTCAGNCGACGAACCACAANGTGGCGAAGGTTCCGAACCACATTCTTACACACATTCCNAGGCTCCTTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6031#0 CCGGTCCGTGCATGTGCGTGCGTCGTGATAGCAGCATCACCATGAATCGTGTCATTTTGG 60 consensus_6031#1 ----------CCGGTGCGTGCGTCGTGATAGCAGCATCACCATGAATCGTGTCATTTTGG 50 consensus_6031#2 ------------------------------------------------------------ consensus_6031#0 TGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCAC 120 consensus_6031#1 TGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCAC 110 consensus_6031#2 ------------------------------------------------------------ consensus_6031#0 GTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACA 180 consensus_6031#1 GTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACA 170 consensus_6031#2 ------------------------------------------------------------ consensus_6031#0 GCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGA 240 consensus_6031#1 GCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGA 230 consensus_6031#2 -------------------------------------------------AGAATCGGC-- 9 * ***** * consensus_6031#0 AGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAA--GGAATAA 298 consensus_6031#1 AGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAA--GGAATAA 288 consensus_6031#2 ACGAGGGTNAT-------AAATGAAGCGTCCCCGACCGCCGCCACGTTGAAAGGGAATAA 62 * *** ** ********************** ****** *** ******* consensus_6031#0 GAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACG-ACAACGGTTT 357 consensus_6031#1 GAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACG-ACAACGGTTT 347 consensus_6031#2 GAATAGGAACAAAAATCGATCAACGACCAG-ACCACAACGACTTTCACGGACAACGGTTT 121 ****************************** ************* **** ********** consensus_6031#0 CACCAGCGTCGAACCCTTCGAGCACTGCTT-CAGTTTCCCAGTCCACCACG--ACGACGC 414 consensus_6031#1 CACCAGCGTCGAACCCTTCGAGCACTGCTT-CAGTTTCCCAGTCCACCACG--ACGACGC 404 consensus_6031#2 CACCAGCGACGAAACCTTTGAGCACTGCTTTCAGTTTCCCAGTC-ACCACGGAACGACGC 180 ******** **** **** *********** ************* ****** ******* consensus_6031#0 CAG-TTGCAACTAGAG---CAGCTA-CATCCACTA--CTCCGGTAT--CAACCACTTTCA 465 consensus_6031#1 CAG-CCGCAACTAGAG---CAGCTA-CATCCACTA--CTCCGGTAT--CAACTACTT-CA 454 consensus_6031#2 CAGGCCGCAAACTAAGAGACAGCTAACATTCACTAAATTCCGGNATATCAACTACTTCAG 240 *** **** ** ****** *** ***** ***** ** **** **** consensus_6031#0 GCCCGCG-AGTACATCCACAAACTCC---GTCATCT--ACGAATTCAG-CTACGAG-TAC 517 consensus_6031#1 GCC-GCG-AGTACATCCACAA-CTCC---GTCATCT--ACGACTTCAG-CTACGAG-TAC 504 consensus_6031#2 NGCCGCGGAGTACATTCACAAACTCCCGGGTCATTCTAACGACTTCAGGCTACGAGGTAC 300 * *** ******* ***** **** ***** **** ***** ******* *** consensus_6031#0 ATCCAACAACTTCCGTCATCTAACAAAAT--CAGGCTTACCAAGTACA----TCAACCAA 571 consensus_6031#1 ATCCA-CAACT-CCGTCATCTA-CGACTT--CAG--CTAC-GAGTACA----TCAAC--A 550 consensus_6031#2 ATCCACAAACTTCCGTCATCTACGAACTTTTCAAGCTTACAGAAGTTACCATTCAAGCAA 360 ***** **** ********** * * ** *** * * **** * consensus_6031#0 GGCTCGGTCTTTCTACAAAGGCTTCTCAAGGCACTAACCCCAAGGGAACCATCCAACGAA 631 consensus_6031#1 AGCTCG--TCTTCTACAACG--CTCTCAAG-CACTA--CCCAAGG--ACCATC-AACGA- 599 consensus_6031#2 GGCTCG-TTCTTCTACAACGCTTTCACATG-CACTA--CCCAAGG--ACCATCAAACGAA 414 ***** ******** * ** ** * ***** ******* ****** ***** consensus_6031#0 CCCCTTACAAACTTACTTAAGGGTCCCGG-GACCAACCCCAAACGGGGGAGATTTGGAAA 690 consensus_6031#1 -CCCCTACGA--CTACT---ACGTCCAGC-A--CAACCACAAC----GGCGAGTTCGA-- 644 consensus_6031#2 CCCTTAACGA-CTTACTTAACGTTTCAGNCGACGAACCACAANGTGGCGAAGGTTCCGAA 473 ** ** * **** * * * **** *** * ** consensus_6031#0 CACCTTTTTTAACCCAAGTTCCAGGTTTCTTTTTTTCCACCCAACAAAAACCGGGGGGCC 750 consensus_6031#1 --CCACTTCTACCACA---TCCAG----CTCTTCTTCCACC----ACAGACCGGGG---C 688 consensus_6031#2 CCACATTCTTA-CACACATTCCNAGGCTCCTTTCTT------------------------ 508 * * ** * ** *** * ** ** consensus_6031#0 CGAAACCGGTTCCCCCACCCGGAAACCCCGGTCCTTGGGGGCCGTGGCCCCAAATTAAAC 810 consensus_6031#1 CGA--CCGTCGCCACC-------------------------------------------- 702 consensus_6031#2 ------------------------------------------------------------ consensus_6031#0 CCGGTTCATCCTAAATT 827 consensus_6031#1 ----------------- consensus_6031#2 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||