These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence [ATTGCCCCNCGTTTTAAGAAAAGTCACGATGAAGTTTTATTGTGTGGCAATGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGAGCTGATCCACTGCCTGGGCAGAGACCTGAAATACCATCGCAAACAAATCAAAAGATAAAAAATGCGAGCGCACCTGAAACACTACGCTATGGAACGTGGTGCTAGTGATGGCACTGACTGGTGTGCTGGTGTATCTATGGACGGTGTATTAACAAACATGTAAAATTCACTCCACATGACAGGGACAGGCTGGGCAAAGCCCAACGAATTGGTTCCGGTCATGANGTATTGCTAACACACAACTCTCGAGATTACTAATCTCAAACTTCATCGGTGATTTCACGACATAGTGTTATCCTTATANGATNTTGCGGAAGAANATTGCCGCCAACTAANGTCTGACCGATACCAGTGCAGGTAACCTAAGACAATAAATNTCTACCCCCAAGGACCATTAAGGGTNNANTACAACAACAGCTTTANATAATATTTGAACAATGCGGACACAGCTATACCAANAATAGCGAGCAATAAAGTACAGAACAGTAANAGTCAAGGCAAACAGTGGCAGGCCTATTACGGGCTAAACGNACNTATCGGTTATCGAATTGTCTATCTTTGGGTACAATTGCCAAGGACAAACTACGGTAACCTATTAATAAACAAGTACGTCCAGNAAATNATTGGGCGCCGGTTGGACTTAAGGGGATTAACGTCAACTTGGTNGCCCCTTGNANNAATATGGGNTAATATTGGCCCATACTTGNTCAGTATGGTAGCACACNGGTCGAACTNGTTCGGCANAACTAAGCAAACTNANCGAACACCA] [+] EMBL AL693706 [ATTGCCCCNCGTTTTAAGAAAAGTCACGATGAAGTTTTATTGTGTGGCAATGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGAGCTGATCCACTGCCTGGGCAGAGACCTGAAATACCATCGCAAACAAATCAAAAGATAAAAAATGCGAGCGCACCTGAAACACTACGCTATGGAACGTGGTGCTAGTGATGGCACTGACTGGTGTGCTGGTGTATCTATGGACGGTGTATTAACAAACATGTAAAATTCACTCCACATGACAGGGACAGGCTGGGCAAAGCCCAACGAATTGGTTCCGGTCATGANGTATTGCTAACACACAACTCTCGAGATTACTAATCTCAAACTTCATCGGTGATTTCACGACATAGTGTTATCCTTATANGATNTTGCGGAAGAANATTGCCGCCAACTAANGTCTGACCGATACCAGTGCAGGTAACCTAAGACAATAAATNTCTACCCCCAAGGACCATTAAGGGTNNANTACAACAACAGCTTTANATAATATTTGAACAATGCGGACACAGCTATACCAANAATAGCGAGCAATAAAGTACAGAACAGTAANAGTCAAGGCAAACAGTGGCAGGCCTATTACGGGCTAAACGNACNTATCGGTTATCGAATTGTCTATCTTTGGGTACAATTGCCAAGGACAAACTACGGTAACCTATTAATAAACAAGTACGTCCAGNAAATNATTGGGCGCCGGTTGGACTTAAGGGGATTAACGTCAACTTGGTNGCCCCTTGNANNAATATGGGNTAATATTGGCCCATACTTGNTCAGTATGGTAGCACACNGGTCGAACTNGTTCGGCANAACTAAGCAAACTNANCGAACACCA] consensusID : consensus_6040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 634 fasta sequence [CCGCCCACGCGTCCGAATGTCGTAAGAAAAGTCCCGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGCGCTGATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACAAACATGTAAAATTCACTCCACATGAAGTGACAGCTGGGAAAGCAAACGTATTGGTTCGGTATGAAGTATGCTAAAAAATCTGAGATTTTAATCTCGAACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAACTAAAAAC-TTTAAATATATTTGAAAATGCGGACAAGCTATCCAAAATAGCGAGCAATAAATCAGAAAGTAAAAGGCAAAAAAAAAAGTGCAGTCTTTCGGCTAACGTGTATGGGTTTGAATGTCTTTTGCTCATGCAGCAAAATACATACTTTTACAGTAGTCAGAAATATGGCGCCGTGGACTAGGATA] [+] EMBL BM611146 [CCGCCCACGCGTCCGAATGTCGTAAGAAAAGTCCCGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGCGCTGATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACAAACATGTAAAATTCACTCCACATGAAGGGACAGCTGGGAAAGCAAACGTATTGGTTCGGTATGAAGTATGCTAAAAAATCTGAGATTTTAATCTCAAACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAACTAAAAAC TTTAAATATATTTGAAAATGCGGACAAGCTATCCAAAATAGCGAGCAATAAATCAGAAAGTAAAAGTCAAACAAAACAGTGCAGTCTTTCGGCTAACGTGTATGGGTTTGAATGTCTTTTGCTCATGCAGCAAAATACATACTTTTACAGTAGTCAGAAATATGGCGCCGTGGACTAGGATA] [+] EMBL CF541763 [ agctcAATGTCGTAAGAAAAGTCCCGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGCGCTGATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACAAACATGTAAAATTCACTCCACATGAAGTGACAGCTGGGAAAGCAAACGTATTGGTTCGGTATGAAGTATGCTAAAAAATCTGAGATTTTAATCTCGAACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAACTAAAAACTTTTAAATATATTTGAAAATGCGGACAAGCTATCCAAAATAGCGAGCAATANATCAGAAAGTAAAAGGCAAAAAAAAAA ] [+] EMBL AF457562 [ TATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGCGCTGATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACAAACATGTAAAATTCACTCCACATGAAGTGACAGCTGGGAAAGCAAACGTATTGGTTCGGTATGAAGTATGCTAAAAAATCTGAGATTTTAATCTCGAACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAACTAAAAAC TTTAAATATATTTGAAAATGCGGACAAGCTATCCAAAATAGCGAGCAATAAATCAGAAAGTAAAAGGCAAAAAAAAAAaaaaaaaa ] consensusID : consensus_6040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [CACGCGTCCGCTCAATCTCGTAAGAAAAGTCACGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGAGCTAATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACCAGCATGTAAAATTCACTCCACATGAAGGGACAGCTGGGAAAGCAAACGAATTGGTTCGGTATGAAGTATGCTAAAAAATCTGCGATTTTAATCTCACACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAAGACATAATTTCTCCCCCAAGACATTAGGTTTTTCAAAAA] [+] EMBL BM610990 [CACGCGTCCGCTCAATCTCGTAAGAAAAGTCACGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGAGCTAATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACCAGCATGTAAAATTCACTCCACATGAAGGGACAGCTGGGAAAGCAAACGAATTGGTTCGGTATGAAGTATGCTAAAAAATCTGCGATTTTAATCTCACACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAAGACATAATTTCTCCCCCAAGACATTAGGTTTTTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6040#1 CCGCCCACGCGTCCG---AATGTCGTAAGAAAAGTCCCGATGAAGTTTTATTCTGTGGGC 57 consensus_6040#2 -----CACGCGTCCGCTCAATCTCGTAAGAAAAGTCACGATGAAGTTTTATTCTGTGGGC 55 consensus_6040#0 -----------ATTGCCCCNCGTTTTAAGAAAAGTCACGATGAAGTTTTATTGTGTGGCA 49 * * *********** *************** ***** consensus_6040#1 AAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCA 117 consensus_6040#2 AAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCA 115 consensus_6040#0 ATGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCA 109 * ********************************************************** consensus_6040#1 ACAGGCGCTGATCCACTTCC-GGGCAGAGACC-GAAATACCATCGCAAACAAATCAAAAG 175 consensus_6040#2 ACAGGAGCTAATCCACTTCC-GGGCAGAGACC-GAAATACCATCGCAAACAAATCAAAAG 173 consensus_6040#0 ACAGGAGCTGATCCACTGCCTGGGCAGAGACCTGAAATACCATCGCAAACAAATCAAAAG 169 ***** *** ******* ** *********** *************************** consensus_6040#1 ATAAAAAA-GCGAGCGCACC-GAAACACT-CGCT-TGGAACG-GGTGCTAG-GATGGCAC 229 consensus_6040#2 ATAAAAAA-GCGAGCGCACC-GAAACACT-CGCT-TGGAACG-GGTGCTAG-GATGGCAC 227 consensus_6040#0 ATAAAAAATGCGAGCGCACCTGAAACACTACGCTATGGAACGTGGTGCTAGTGATGGCAC 229 ******** *********** ******** **** ******* ******** ******** consensus_6040#1 TGACTGGTGG--CGGTGTTCTT---GGCGGTGTATTAACAAACATGTAAAATTCACTCCA 284 consensus_6040#2 TGACTGGTGG--CGGTGTTCTT---GGCGGTGTATTAACCAGCATGTAAAATTCACTCCA 282 consensus_6040#0 TGACTGGTGTGCTGGTGTATCTATGGACGGTGTATTAACAAACATGTAAAATTCACTCCA 289 ********* ***** * * ************ * ****************** consensus_6040#1 CATGA-AGTGACAG-CTGGGAAAG--CAAACGTATTGGTTCGG--TATGAAGTAT-GCTA 337 consensus_6040#2 CATGA-AGGGACAG-CTGGGAAAG--CAAACGAATTGGTTCGG--TATGAAGTAT-GCTA 335 consensus_6040#0 CATGACAGGGACAGGCTGGGCAAAGCCCAACGAATTGGTTCCGGTCATGANGTATTGCTA 349 ***** ** ***** ***** ** * **** ******** * **** **** **** consensus_6040#1 AAAAAT-----CTGAGATT-TTAATCTCGAACTTCATCGGTGATTTCACGA-ATAGTGTT 390 consensus_6040#2 AAAAAT-----CTGCGATT-TTAATCTCACACTTCATCGGTGATTTCACGA-ATAGTGTT 388 consensus_6040#0 ACACACAACTCTCGAGATTACTAATCTCAAACTTCATCGGTGATTTCACGACATAGTGTT 409 * * * * **** ******* ********************* ******** consensus_6040#1 --TCTTATTGATTG----GGAAGAATG----CGCCAA-TAAGGT---GCCGATAC-AGTG 435 consensus_6040#2 --TCTTATTGATTG----GGAAGAATG----CGCCAA-TAAGGT---GCCGATAC-AGTG 433 consensus_6040#0 ATCCTTATANGATNTTGCGGAAGAANATTGCCGCCAACTAANGTCTGACCGATACCAGTG 469 ***** * ******* ****** *** ** ******* **** consensus_6040#1 ---------------AGTAAATAACTA--------------------------------A 448 consensus_6040#2 ---------------AGTAAATAAGAC--------------------------------A 446 consensus_6040#0 CAGGTAACCTAAGACAATAAATNTCTACCCCCAAGGACCATTAAGGGTNNANTACAACAA 529 * ***** * consensus_6040#1 AAACTTTAAATA-TATTTGAA-AATGCGGACA-AGCTATCC--AAAATAGCGAGCAATAA 503 consensus_6040#2 TAATTTC------TCCCCCAA-GACAT---TA-GGTTTTTC--AAAAA------------ 481 consensus_6040#0 CAGCTTTANATAATATTTGAACAATGCGGACACAGCTATACCAANAATAGCGAGCAATAA 589 * ** * ** * * * * * * * ** consensus_6040#1 AT--CAGAA-AGTAAAAGGCAAAAAAAAAAGTG-CAGTCTTTC----GGCTAA---CGTG 552 consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 AGTACAGAACAGTAANAGTCAAGGCAAACAGTGGCAGGCCTATTACGGGCTAAACGNACN 649 consensus_6040#1 TATGGGTT-------TGAATGTCTTTTGCTCATGCAGCAAAATACATACTTTTACAGTAG 605 consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 TATCGGTTATCGAATTGTCTATCTTTGGGTACAATTGCCAAGGACAAACTACGGTAACCT 709 consensus_6040#1 TCAGAAATATGGCGCCGTGGACTAGGATA------------------------------- 634 consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 ATTAATAAACAAGTACGTCCAGNAAATNATTGGGCGCCGGTTGGACTTAAGGGGATTAAC 769 consensus_6040#1 ------------------------------------------------------------ consensus_6040#2 ------------------------------------------------------------ consensus_6040#0 GTCAACTTGGTNGCCCCTTGNANNAATATGGGNTAATATTGGCCCATACTTGNTCAGTAT 829 consensus_6040#1 ------------------------------------------------------- consensus_6040#2 ------------------------------------------------------- consensus_6040#0 GGTAGCACACNGGTCGAACTNGTTCGGCANAACTAAGCAAACTNANCGAACACCA 884 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||