These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 677 fasta sequence [CCGCCCACGCGTCCGCCACCATCCGATCAAGCCACAACAATTGTTTGCAGCTTCGTTTGCGGGGAAACGAAATTTAGCACGATGCCGAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCCGCTGCTGATGGGCCCGAACGGTCCGCTCCCGCCGCCGATGATGGGCATGCGACCCCCGCCGATGATGGTACCGACGATGGGCATGCCACCGATGGGTCTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCATTTCACCTCTACTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCTAGTGTATCGGATAAGCT] [+] EMBL BM589559 [CCGCCCACGCGTCCGCCACCATCCGATCAAGCCACAACAATTGTTTGCAGCTTCGTTTGCGGGGAAACGAAATTTAGCACGATGCCGAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCGAGCGTCCGGAAGACGCACTGCACCGGCCGGAAGCACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATTTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCCGCTGCTGATGGGCCCGAACGGGCCACTTCCGCCGCCGATGATGGGCATGCGACCCCCGCCGATGATGGTACCGACGATGGGCATGCCACCGATGGGTCTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCACTTCACCTCTACTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCTAGT ] [+] EMBL BX626956 [ TTTGCAGCTTCGTTTGCGGGGAAACGAAATTTAGCACGATGCCGAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCCGCTGCTGATGGGCCCGAACGGTCCGCTCCCGCCGCCGATGATGGGCATGCGACCCCCGCCGATGATGGTACCGACGATGGGCATGCCACCGATGGGTCTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCATTTCACCTCTACTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCTAGTGTATCGGATAAGCT] [+] EMBL BX613766 [ TGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAAGGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGAATGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGAAGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCGGGCGCACCGCCGCTGCTGATGGGCCCGAACGGTCCGCTCCCGCCGCCGAAGAAGGGCATGCGACCCCCGCCGAAGATGGGACCGACGAAGGGCATGCCACCGAAGGGTCTGGGGAAGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCA ] [+] EMBL BX608313 [ CGATGGGTCTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAAGGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCATTTCACCTCTACTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCTAGTGTATCGGATA ] consensusID : consensus_6044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TTACATATTGACAACATCAACAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCACATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCGCTGCTGATGGGCCGAACGGTCCGCTCCCGCCGCCGATGATGGGC] [+] EMBL CNS095DH [TTACATATTGACAACATCAACAAATATTACTGTGATTACTGTGACACCTACCTGACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAATGTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCACATCTGATCGACGCGACGACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAGCCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCGGGCATGCCGGCTGGCGCACCGCGCTGCTGATGGGCCGAACGGTCCGCTCCCGCCGCCGATGATGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6044#0 CCGCCCACGCGTCCGCCACCATCCGATCAAGCCACAACAATTGTTTGCAGCTTCGTTTGC 60 consensus_6044#1 ------------------------------------------------------------ consensus_6044#0 GGGGAAACGAAATTTAGCACGATGCCGAAATATTACTGTGATTACTGTGACACCTACCTG 120 consensus_6044#1 ------TTACATATTGACAACATCAACAAATATTACTGTGATTACTGTGACACCTACCTG 54 * ** ** ** ********************************* consensus_6044#0 ACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAAT 180 consensus_6044#1 ACGCACGATTCGCCCAGCGTCCGGAAGACGCACTGCACCGGCCGAAAACACAAGGACAAT 114 ************************************************************ consensus_6044#0 GTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCAGCATCTGATCGACGCGACG 240 consensus_6044#1 GTGAAATTTTACTACCAGAAATGGATGGAGGAGCAGGCGCA-CATCTGATCGACGCGACG 173 ***************************************** ****************** consensus_6044#0 ACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAG 300 consensus_6044#1 ACCGCAGCGTACAAGGCGGGCAAGATTGCCCCGAATCCGTTCACCGCGGGACCACCGAAG 233 ************************************************************ consensus_6044#0 CCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCG 360 consensus_6044#1 CCGAACATTTCCATCCCACCGCCGACGATGAACATGCCGCCTAGGCCGGGCATGATACCG 293 ************************************************************ consensus_6044#0 GGCATGCCGGCTGGCGCACCGCCGCTGCTGATGGGCCCGAACGGTCCGCTCCCGCCGCCG 420 consensus_6044#1 GGCATGCCGGCTGGCGCACCGC-GCTGCTGATGGGCC-GAACGGTCCGCTCCCGCCGCCG 351 ********************** ************** ********************** consensus_6044#0 ATGATGGGCATGCGACCCCCGCCGATGATGGTACCGACGATGGGCATGCCACCGATGGGT 480 consensus_6044#1 ATGATGGGC--------------------------------------------------- 360 ********* consensus_6044#0 CTGGGGATGCGGCCACCGGTCATGAGTGCGGCACCGCCACAGCTCAACCCGAAAAGCTAA 540 consensus_6044#1 ------------------------------------------------------------ consensus_6044#0 GGCTGCCGGGCAGGCAGGGTACGTCCGTCTGTTTTTCTTTCTTCATTCATTTCACCTCTA 600 consensus_6044#1 ------------------------------------------------------------ consensus_6044#0 CTCAGTATGGAACGATAGGGCGGTAATCACGGAATTACGGAAAAATATATACTACTACCT 660 consensus_6044#1 ------------------------------------------------------------ consensus_6044#0 AGTGTATCGGATAAGCT 677 consensus_6044#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||