These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1205 fasta sequence [CGACCCACGCGTCCGGTTCCCACTTCATCTCGCAAGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCGCGTAGACATCCAGGCGAGCAAAGAGATGATTATAGAGGGAGGGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGTGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACACACACACAGCATTGAAAGCACATTTAAAAGTGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAATATTGGTTATTATTCCTTCTCTCCCCTTTTTTTTACAAAATCATTTAAATACTTGACCCTCGAAACAAATCAAATCAATGGGGGCTAACCTGTTATGCATTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACAAAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACACTGCCGAAGTGAAAGAGGAAAATGAAATGAAAATGGAAACAAAAAAAGCAAAAAAAAAGAGATAAAGAAGTGAAAACAGGAAAAACAAATCAACAAAACATAAGAACAACCGAAACAACAGAAACCAAAAAAACCAAAACCGTAAACGAAAACTACCATATTGCAATAGTCTGAATTTAGCAAACGTGTGTTGCGGTATATAGTGTGAATAAAGTCTAGTAAAAAAAACAAATCAATTGAAGCTAATGCACACAAACACGATGAAGATGACGATGATGATGAAAATAGATAGTGAGAACAACAACAGAAACCGACTCTCGTGCACCACGTGCAACGAGCAGAGACAGCACACAGAGAGAAAGAGAGGGATTGGAATCTAAGATCCATATTGTAATTGAACTATGTGCATAATAACTACATTACATTGAAATATGCATCAGAACGGTAATTAGCAAATTAATTAAGCCTCCCAAACAAACCCCCTCCTCTCCCCATACCGAAAAGCGAATTGTGTACATGCGCAAGGCGGAGCGAAAG] [+] EMBL BM656443 [CGACCCACGCGTCCGGTTCCCACTTCATCTCGCAAGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCGCGTAGACATCCAGGCGAGCAAAGAGATGATTATAGAGGGAGGGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGTGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACACACACACAGCATTGAAAGCACATTTAAAAGTGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAATATTGGTTATTATTCCTTCTCTCCCCTTTTTTTTACAAAATCATTTAAATACTTGACCCTCGAAACAAATCAAATCAATGGGGGCTAACCTGTTATGCATTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACAAAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACACTGCCGAAGTGAAAGAGGAAAATGAAATG ] [+] EMBL BM647412 [ CCGGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACACTGCCGAAGTGAAAGAGGAAAATGAAATGAAAATGGAAACAAAAAAAGCAAAAAAAAAGAGATAAAGAAGTGAAAACAGGAAAAACAAATCAACAAAACATAAGAACAACCGAAACAACAGAAACCAAAAAAACCAAAACCGTAAACGAAAACTACCATATTGCAATAGTCTGAATTTAGCAAACGTGTGTTGCGGTATATAGTGTGAATAAAGTCTAGTAAAAAAAACAAATCAATTGAAGCTAATGCACACAAACACGATGAAGATGACGATGATGATGAAAATAGATAGTGAGAACAACAACAGAAACCGACTCTCGTGCACCACGTGCAACGAGCAGAGACAGCACACAGAGAGAAAGAGAGGGATTGGAATCTAAGATCCATATTGTAATTGAACTATGTGCATAATAACTACATTACATTGAAATATGCATCAGAACGGTAATTAGCAAATTAATTAAGCCTCCCAAACAAACCCCCTCCTCTCCCCATACCGAAAAGCGAATTGTGTACATGCGCAAGGCGGAGCGAAAG] consensusID : consensus_6051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 881 fasta sequence [TCTTCCGAGGTGGAGTTGGAGAAGCGACGATGAAGCCTTTTTTTTATTATTATATATTCTTTTGTTGTACTCTTACCCTTTTCTTCCTCCCTCGAACACGGTTCACAACAGATATTTTACTATCGATAGAAGAGTTACTCTAAATTGCTAATAGAAACTAATAGCAGCTTTAGCGGAGAAAGGATTCGATTTCATTACGCAAAAAATATTACGCAAGAAAAACCAACCCGACCGTCATCACACCCATACACATATACACACTCCTATCCACACGCTGGGTGTTGGTGATGGTGGGGCCGGCGGGGTGTGGTATATTTTGAGATTTTCTTTTGGAAGCAGAAACTAACTAAAACCATCGGTTATAGAAATTGTATTATAAATTGTGTGCTCCCTTTCCCTCTGTTCCCACTTCATCTCGCAAGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGGTACACTCGCAATTAAATACTAGTACCGCGTAGACA-TCCAGGCGAGCAAAGAGATGATTATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACATACACACAGCATTGAAGCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTTCCCCCTTTTTTTACAAAATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGG] [+] EMBL BM577601 [TCTTCCGAGGTGGAGTTGGAGAAGCGACGATGAAGCCTTTTTTTTATTATTATATATTCTTTTGTTGTACTCTTACCCTTTTCTTCCTCCCTCGAACACGGTTCACAACAGATATTTTACTATCGATAGAAGAGTTACTCTAAATTGCTAATAGAAACTAATAGCAGCTTTAGCGGAGAAAGGATTCGATTTCATTACGCAAAAAATATTACGCAAGAAAAACCAACCCGACCGTCATCACACCCATACACATATACACACTCCTATCCACACGCTGGGTGTTGGTGATGGTGGGGCCGGCGGGGTGTGGTATATTTTGAGATTTTCTTTTGGAAGCAGAAACTAACTAAAACCATCGGTTATAGAAATTGTATTATAAATTGTGTGCTCCCTTTCCCTCTGTTCCCACTTCATCTCGCAAGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGGTACACTCGCAATTAAATACTAGTACCGCGTAGACA TCCAGGCGAGCAAAGAGAT ] [+] EMBL BM648854 [ ccgAAGAAAACCCAACCCGACCGTCATCACACCC ACACATATACACACTCCTATCCACACGCTGGGTGTTGGTGATGGTGGGGCCGGCGGTGTGTGGTATATTTTGAGATTTTTTTTTGTAAGCAAAAACTAACTAAAACCATCGTTTATAGAAATTGTATTATAAATTGTGTGCTCCCTTTCCCTCTGTTCCCACTTCATCTCGCAAGCGGCCACTAGTTGCTGTGTTGCAAATTAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCACGTACACACTCGA GCGAGCAAAGAGATGATTATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACATACACACAGCATTGAAGCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTTCCCCCTTTTTTTACAAAATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGG] consensusID : consensus_6051#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGCCCACGCGTCCGTGTTCAGATCGCAAGCGGCCACTAGTTGCTGTGTTGCAAATTAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCACGTACACACTCGAGCGAGCAAAGAGATGATTATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACATACACACAGCATTGAAGCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTTCCCCCTTTTTTTACAAAATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGGGCTAACCTGTTATGCATTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACAAAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACA] [+] EMBL BM643788 [CCGCCCACGCGTCCGTGTTCAGATCGCAAGCGGCCACTAGTTGCTGTGTTGCAAATTAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCACGTACACACTCGAGCGAGCAAAGAGATGATTATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACATACACACAGCATTGAAGCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTTCCCCCTTTTTTTACAAAATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGGGCTAACCTGTTATGCATTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACAAAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6051#0 ------------------------------------------------------------ consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 TCTTCCGAGGTGGAGTTGGAGAAGCGACGATGAAGCCTTTTTTTTATTATTATATATTCT 60 consensus_6051#0 ------------------------------------------------------------ consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 TTTGTTGTACTCTTACCCTTTTCTTCCTCCCTCGAACACGGTTCACAACAGATATTTTAC 120 consensus_6051#0 ------------------------------------------------------------ consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 TATCGATAGAAGAGTTACTCTAAATTGCTAATAGAAACTAATAGCAGCTTTAGCGGAGAA 180 consensus_6051#0 ------------------------------------------------------------ consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 AGGATTCGATTTCATTACGCAAAAAATATTACGCAAGAAAAACCAACCCGACCGTCATCA 240 consensus_6051#0 ------------------------------------------------------------ consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 CACCCATACACATATACACACTCCTATCCACACGCTGGGTGTTGGTGATGGTGGGGCCGG 300 consensus_6051#0 ------------------------------------------------------------ consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 CGGGGTGTGGTATATTTTGAGATTTTCTTTTGGAAGCAGAAACTAACTAAAACCATCGGT 360 consensus_6051#0 --------------------------CGACCCACGCGTCCGGTTCCCACTTCATCTCGCA 34 consensus_6051#2 --------------------------CCGCCCACGCGTCCGTGT------TCAGATCGCA 28 consensus_6051#1 TATAGAAATTGTATTATAAATTGTGTGCTCCCTTTCCCTCTGTTCCCACTTCATCTCGCA 420 *** * * * *** ***** consensus_6051#0 AGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGTTACACTC 94 consensus_6051#2 AGCGGCCACTAGTTGCTGTGTTGCAAATTAAATTACCTGGTGCAAGGAAATGTTACACTC 88 consensus_6051#1 AGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGGTACACTC 480 ********** *************** * *********************** ******* consensus_6051#0 GCAATTAAATACTAGTACCGCGTAGACATCCAGGCGAGCAAAGAGATGATTATAGAGGGA 154 consensus_6051#2 GCAATTAAATACTAGTACCACGTACACACTCGAGCGAGCAAAGAGATGATTATAGAGGGA 148 consensus_6051#1 GCAATTAAATACTAGTACCGCGTAGACATCCAGGCGAGCAAAGAGATGATTATAGAGGGA 540 ******************* **** *** * *************************** consensus_6051#0 GGGAGAGAGAGAGA--------------AGAAGCGTTTGGGAGAATAAGTTGCATTTTGA 200 consensus_6051#2 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGA 208 consensus_6051#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGA 600 * ************ ******************************** consensus_6051#0 ATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGA 260 consensus_6051#2 ATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGA 268 consensus_6051#1 ATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGA 660 ************************************************************ consensus_6051#0 GATGTAAAACGAAACAATTGTTAGGTGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTA 320 consensus_6051#2 GATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTA 328 consensus_6051#1 GATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTA 720 ************************* ********************************** consensus_6051#0 CACACACACAGCATTGAAAGCACATTTAAAAGTGGAAGACAAAAGCAAGCAACGAAGCAG 380 consensus_6051#2 CATACACACAGCATTGAA-GCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAG 387 consensus_6051#1 CATACACACAGCATTGAA-GCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAG 779 ** *************** ************ **************************** consensus_6051#0 AAAAGGAAGACAAAATA------TTGGTTATTATTCCTTCTCTCCCCTTTTTTTTACAAA 434 consensus_6051#2 AAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTT--CCCCCTTTTTTTACAAA 445 consensus_6051#1 AAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTT--CCCCCTTTTTTTACAAA 837 *************** * **************** * **** ************ consensus_6051#0 ATCATTTAAATACTTGACCCTCGAAACAAATCAAATCAATGGGGGCTAACCTGTTATGCA 494 consensus_6051#2 ATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGGGCTAACCTGTTATGCA 505 consensus_6051#1 ATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGG---------------- 881 ********************** ** *********** * **** consensus_6051#0 TTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACA 554 consensus_6051#2 TTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACA 565 consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 AAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAG 614 consensus_6051#2 AAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAG 625 consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 AAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACACTGCCG 674 consensus_6051#2 AAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACA------ 679 consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 AAGTGAAAGAGGAAAATGAAATGAAAATGGAAACAAAAAAAGCAAAAAAAAAGAGATAAA 734 consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 GAAGTGAAAACAGGAAAAACAAATCAACAAAACATAAGAACAACCGAAACAACAGAAACC 794 consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 AAAAAAACCAAAACCGTAAACGAAAACTACCATATTGCAATAGTCTGAATTTAGCAAACG 854 consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 TGTGTTGCGGTATATAGTGTGAATAAAGTCTAGTAAAAAAAACAAATCAATTGAAGCTAA 914 consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 TGCACACAAACACGATGAAGATGACGATGATGATGAAAATAGATAGTGAGAACAACAACA 974 consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 GAAACCGACTCTCGTGCACCACGTGCAACGAGCAGAGACAGCACACAGAGAGAAAGAGAG 1034 consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 GGATTGGAATCTAAGATCCATATTGTAATTGAACTATGTGCATAATAACTACATTACATT 1094 consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 GAAATATGCATCAGAACGGTAATTAGCAAATTAATTAAGCCTCCCAAACAAACCCCCTCC 1154 consensus_6051#2 ------------------------------------------------------------ consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 TCTCCCCATACCGAAAAGCGAATTGTGTACATGCGCAAGGCGGAGCGAAAG 1205 consensus_6051#2 --------------------------------------------------- consensus_6051#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||