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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1502 fasta sequence
[CCGGAATCACCATCAGCGCTAGTTGCTTTTCTCGCTGGCAAATTAATTAGTGTACGGTGTGTAAAAAGCAGCAAAATCCCTAGCCCAGAAGCATATTTTACTTGTCGTGTGTTTGTGAAGAAATTGCTCTCTTCAATTGCACGACCACCGTACTGTGTGGCATCATCTAGATCCGTGCCGTGCATCGTATACGGGAAGGGCGGGTTCACCGAGCTCGCTGCAACTTGTGTGTGAGAGCGAGTGTGTTTTTGTTTTTCCATTGCGTTATCATCTGCCCCGTCCGGTTCCGCATCATTCCGGCGTGGTGAACAGGGGGTTGAACAGGGGGTCTAAAAAAGGCAATCGAGACCGCCACGGTAGCACACTTCCGGTGTTCTGGTCCAAATCGCAAACATCATTAGCGGTGCAGCGATAGAGAGAAGAGGGGAAGCAAAAAGTGACTTGAGGGGAAAGAAAAACAAGACAAGAGCCCCCTGACCGCGAACGTCATTCCGACACTGGGCCACCAAACATCATCATCATCGTCGTCCAACGCCACCAACACCACTACTGTAAGCGTACGCTCCCCATCATAATTGGTGGCGTACAAAGAGAGGCTTGTTTTGTCCCCCCACCCGCGGTGTTTGTCACATCCCTCGGCGGCAGGCGCATAAACTGTTTGCGTAGCAGCTTCCACCCAGTAGTAGTGCAGGCAGGCAGAGGCGTCAGGCGGGTTTTTGCGAATTTCCCCCTTTTTGCGTACGGTTGTCTGGATGGCGGCCGAAATCAAGCCTGCACCGCGGAGTGCGAATGACTGCTTCAGCACCACCAAAAAGCCGGAACTGCTCAGCAAGCTCGAGGGAAGCAACGATGACGTGAACGCGGCCGTACTGATTCCGGGCGAGGACGGCGTTATCAGTGTTTGTGATGGCAAAACGATACGGGTGTGGCAGAAGCGCGACTCGGGCCAGTACTGGCCCTCGATCTGTCAGTACATGCCGTCGGGCTGCACGTCCCTGTGCTACACGCCGGAAACGCGAACGCTCTTCATCGGGCAGGAGAATGGCACGATCTCGCAGTTCACGCTGTCGGACGACTGCAACCGGCTGACGCCGATCCGGGAGTATCTGGCGCACCAGGCCCGCATCACCAGCGTCACGTTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGGAAGGACAAGTTCTTCGCCTACCACAGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGAGGCGATGTGTACTGCGTTGCAATACGACGCCTTATCAAAGTATGTGTTTGTGGGAGATTACAGCGGGCAAATAACGATGCTGAAGCTGAGCGGCACCGGTGCCACGCTGGTCACCACGATGAAGGGCCACTCCGGCTCGGTCCGCTCGCTGTACTGGGCCGAGGGGCCCAGCTGCTGTTCAGTGGCTCCCAGGACCAGTCCGCGACACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACGTAAAATGAC]
[+] EMBL BM614745 [CCGGAATCACCATCAGCGCTAGTTGCTTTTCTCGCTGGCAAATTAATTAGTGTACGGTGTGTAAAAAGCAGCAAAATCCCTAGCCCAGAAGCATATTTTACTTGTCGTGTGTTTGTGAAGAAATTGCTCTCTTCAATTGCACGACCACCGTACTGTGTGGCATCATCTAGATCCGTGCCGTGCATCGTATACGGGAAGGGCGGGTTCACCGAGCTCGCTGCAACTTGTGTGTGAGAGCGAGTGTGTTTTTGTTTTTCCATTGCGTTATCATCTGCCCCGTCCGGTTCCGCATCATTCCGGCGTGGTGAACAGGGGGTTGAACAGGGGGTCTAAAAAAGGCAATCGAGACCGCCACGGTAGCACACTTCCGGTGTTCTGGTCCAAATCGCAAACATCATTAGCGGTGCAGCGATAGAGAGAAGAGGGGAAGCAAAAAGTGACTTGAGGGGAAAGAAAAACAAGACAAGAGCCCCCTGACCGCGAACGTCATTCCGACACTGGGCCACCAAACATCATCATCATCGTCGTCCAACGCCACCAACACCACTACTGTAAGCGTACGCTCCCCATCATAATTGGTGGCGTACAAAGAGAGGCTTGTTTTGTCCCCCCACCCGCGGTGTTTGTCACATCCCTCGGCGGCAGGCGCATAAACTGTTTGCGTAGCAGCTTC ]
[+] EMBL CNS09K9Q [ GTACAAAGAGAGGCTTGTTTTGTCCCCCCACCCGCGGTGTTTGTCACATCCCTCGGCGGCAGGCGCATAAACTGTTTGCGT CGGCTTCCACCCAGTAGTAGTGCAGGCAGGCAGAGGCGTCAGGCGGGTTTTTGCGAATTTCCCCCTTTTTGCGTACGGTTGTCTGGATGGCGGCCGAAATCAAGCCTGCACCGCGGAGTGCGAATGACTGCTTCAGCACCACCAAAAAGCCGGAACTGCTCAGCAAGCTCGAGGGAAGCAACGATGACGTGAACGCGGCCGTACTGATTCCGGGCGAGGACGGCGTTATCAGTGTTTGTGATGGCAAAACGATACGGGTGTGGCAGAAGCGCGACTCGGGCCAGTACTGGCCCTCGATCTGTCAGTACATGCCGTCGGGCTGCACGTCCCTGTGCTACACGCCGGAAACGCGAACGCTCTTCATCGGGCAGGAGAATGGCACGATCTCGCAGTTCACGCTGTCGGACGACTGCAACCGGCTGACGCCGATCCGGGAGTATCTGGCGCACCAGGCCCGCATCACCAGCGTCACGTTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGGAAGGACAAGTTCTTCGCCTACCACAGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGAGGCGATGTGTACTGCGTTGCAATACGACGCCTTATCAAAGTATGTGTTTGTGGGAGATTACAGCGGGCAAATAACGATGCTGAAGCTGAGCGGCACCGGTGCCACGCTGGTCACCACGATGAAGGGCCACTCCGGCTCGGTCCGCTCGCTGTACTGGGCCGAGGGGCCCAGCTGCTGTTCAGTGGCTCCCAGGACCAGTCCGCGACACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACGTAAAATGAC]
consensusID : consensus_6056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence
[GAATAAAAAAATCAGCACCACCAAAAAGCCGGAACTGCTCAGCAAGCTCGAGGGAAGCAACGATGACGTGAACGCGGCCGTACTGATTCCGGGCGAGGACGGCGTTATCAGTGTTTTTGATGGCAAAACGATACGGGTGTGGCAGAAGCGCGACTCGGCCAGTACTGGCCCTCGATCTGTCAGTACATGCCGTCGGGCTGCACGTCCCTGTGCTACACGCCGGAAACGCGAACGCTCTTCATCGGGCAGGAGAATGGCACGATCTCGCAGTTCACGCTGTCGGACGACTGCCAAACCCCTGACGCCGATCCGGGAGTTTCTGGCGCACCAGGCCCGCATCACCAGCGTCACGTTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGGAAGGACAAGTTCTTCGCCTACCACAGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGAGGCGATGTGTACTGCGATGCAATACGACGCCTTATCAAAGTATGTGTTTGTGGGAGATTACAGCGGGCAAATAACGATGCTGAAGCTGAGCGGCACCGGTGCCACGCTGGTCACCACGATGAAGGGCCACTCCGGCTCGGTCCGCTCGCTGTACTGGGCCGAGGGGCCCCAGCTGCTGTTCAGTGGCTCCCAGGACCAGTCCGCGTCACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACGTAAAATGACAAGTGGAAAAATAGAGTTTTA]
[-] EMBL CNS09K9R [GAATAAAAAAATCAGCACCACCAAAAAGCCGGAACTGCTCAGCAAGCTCGAGGGAAGCAACGATGACGTGAACGCGGCCGTACTGATTCCGGGCGAGGACGGCGTTATCAGTGTTTTTGATGGCAAAACGATACGGGTGTGGCAGAAGCGCGACTCGGCCAGTACTGGCCCTCGATCTGTCAGTACATGCCGTCGGGCTGCACGTCCCTGTGCTACACGCCGGAAACGCGAACGCTCTTCATCGGGCAGGAGAATGGCACGATCTCGCAGTTCACGCTGTCGGACGACTGCCAAACCCCTGACGCCGATCCGGGAGTTTCTGGCGCACCAGGCCCGCATCACCAGCGTCACGTTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGGAAGGACAAGTTCTTCGCCTACCACAGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGAGGCGATGTGTACTGCGATGCAATACGACGCCTTATCAAAGTATGTGTTTGTGGGAGATTACAGCGGGCAAATAACGATGCTGAAGCTGAGCGGCACCGGTGCCACGCTGGTCACCACGATGAAGGGCCACTCCGGCTCGGTCCGCTCGCTGTACTGGGCCGAGGGGCCCCAGCTGCTGTTCAGTGGCTCCCAGGACCAGTCCGCGTCACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACGTAAAATGACAAGTGGAAAAATAGAGTTTTA]
consensusID : consensus_6056#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence
[CCGGCAAAACGATACGGGTGTGGCAGAAGCGCGACTCGGGCCAGTACTGGCCCTCGATCTGTCAGTACATGCCGTCGGGCTGCACGTCCCTGTGTTACACGCCGGAAACGCGAACGCTCTTCATCGGGCAGGAGAATGGCACGATCTCGCAGTTCACGCTGTCGGACGACTGCAACCGGCTGACGCCGATCCGGGAGTATCTGGCGCACCAGGCCCGCATCACCAGCGTCACGTTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGGAAGGACAAGTTCTTCGCCTACCACAGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGAAGCGATGTGTACTGCGATGCAATACGACGCCTTATCAAAGTATGTGTTTGTGGGAGATTACAGCGGGCAAATAACGATGCTGAAGCTGAGCGGCACCGGTGCCACGCTGGTCACCACGATGAAGGGCCACTCCGGCTCGGTCCGCTCGCTGTACTGGGCCGAGGGGCCCCAGCTGCTGTTCAGTGGCTCCCAGGACCAGTCCGTGATCGTGTGGGGACGTCGGTGGCAAGCGGGGAACCACCTACGAGCTGCATGGACATAACAACAAAGTATCGT]
[+] EMBL BM608255 [CCGGCAAAACGATACGGGTGTGGCAGAAGCGCGACTCGGGCCAGTACTGGCCCTCGATCTGTCAGTACATGCCGTCGGGCTGCACGTCCCTGTGTTACACGCCGGAAACGCGAACGCTCTTCATCGGGCAGGAGAATGGCACGATCTCGCAGTTCACGCTGTCGGACGACTGCAACCGGCTGACGCCGATCCGGGAGTATCTGGCGCACCAGGCCCGCATCACCAGCGTCACGTTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGGAAGGACAAGTTCTTCGCCTACCACAGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGAAGCGATGTGTACTGCGATGCAATACGACGCCTTATCAAAGTATGTGTTTGTGGGAGATTACAGCGGGCAAATAACGATGCTGAAGCTGAGCGGCACCGGTGCCACGCTGGTCACCACGATGAAGGGCCACTCCGGCTCGGTCCGCTCGCTGTACTGGGCCGAGGGGCCCCAGCTGCTGTTCAGTGGCTCCCAGGACCAGTCCGTGATCGTGTGGGGACGTCGGTGGCAAGCGGGGAACCACCTACGAGCTGCATGGACATAACAACAAAGTATCGT]
[+] EMBL BM577616 [ aTCGCAGTTCACGCTGTCGGACGACTGCAACCGGCTGACGCCGATCCGGGAGTATCTGGCGCACCAGGCCCGCATCACCAGCGTCACGTTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGAAAGGACAAGTTCTTCGCCTACCACAGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6056#0 CCGGAATCACCATCAGCGCTAGTTGCTTTTCTCGCTGGCAAATTAATTAGTGTACGGTGT 60
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 GTAAAAAGCAGCAAAATCCCTAGCCCAGAAGCATATTTTACTTGTCGTGTGTTTGTGAAG 120
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 AAATTGCTCTCTTCAATTGCACGACCACCGTACTGTGTGGCATCATCTAGATCCGTGCCG 180
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 TGCATCGTATACGGGAAGGGCGGGTTCACCGAGCTCGCTGCAACTTGTGTGTGAGAGCGA 240
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 GTGTGTTTTTGTTTTTCCATTGCGTTATCATCTGCCCCGTCCGGTTCCGCATCATTCCGG 300
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 CGTGGTGAACAGGGGGTTGAACAGGGGGTCTAAAAAAGGCAATCGAGACCGCCACGGTAG 360
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 CACACTTCCGGTGTTCTGGTCCAAATCGCAAACATCATTAGCGGTGCAGCGATAGAGAGA 420
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 AGAGGGGAAGCAAAAAGTGACTTGAGGGGAAAGAAAAACAAGACAAGAGCCCCCTGACCG 480
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 CGAACGTCATTCCGACACTGGGCCACCAAACATCATCATCATCGTCGTCCAACGCCACCA 540
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 ACACCACTACTGTAAGCGTACGCTCCCCATCATAATTGGTGGCGTACAAAGAGAGGCTTG 600
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 TTTTGTCCCCCCACCCGCGGTGTTTGTCACATCCCTCGGCGGCAGGCGCATAAACTGTTT 660
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 GCGTAGCAGCTTCCACCCAGTAGTAGTGCAGGCAGGCAGAGGCGTCAGGCGGGTTTTTGC 720
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 GAATTTCCCCCTTTTTGCGTACGGTTGTCTGGATGGCGGCCGAAATCAAGCCTGCACCGC 780
consensus_6056#1 ------------------------------------------------------------
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 GGAGTGCGAATGACTGCTTCAGCACCACCAAAAAGCCGGAACTGCTCAGCAAGCTCGAGG 840
consensus_6056#1 -------GAATAAAAAAATCAGCACCACCAAAAAGCCGGAACTGCTCAGCAAGCTCGAGG 53
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 GAAGCAACGATGACGTGAACGCGGCCGTACTGATTCCGGGCGAGGACGGCGTTATCAGTG 900
consensus_6056#1 GAAGCAACGATGACGTGAACGCGGCCGTACTGATTCCGGGCGAGGACGGCGTTATCAGTG 113
consensus_6056#2 ------------------------------------------------------------
consensus_6056#0 TTTGTGATGGCAAAACGATACGGGTGTGGCAGAAGCGCGACTCGGGCCAGTACTGGCCCT 960
consensus_6056#1 TTTTTGATGGCAAAACGATACGGGTGTGGCAGAAGCGCGACTCGG-CCAGTACTGGCCCT 172
consensus_6056#2 ------CCGGCAAAACGATACGGGTGTGGCAGAAGCGCGACTCGGGCCAGTACTGGCCCT 54
************************************* **************
consensus_6056#0 CGATCTGTCAGTACATGCCGTCGGGCTGCACGTCCCTGTGCTACACGCCGGAAACGCGAA 1020
consensus_6056#1 CGATCTGTCAGTACATGCCGTCGGGCTGCACGTCCCTGTGCTACACGCCGGAAACGCGAA 232
consensus_6056#2 CGATCTGTCAGTACATGCCGTCGGGCTGCACGTCCCTGTGTTACACGCCGGAAACGCGAA 114
**************************************** *******************
consensus_6056#0 CGCTCTTCATCGGGCAGGAGAATGGCACGATCTCGCAGTTCACGCTGTCGGACGACTGC- 1079
consensus_6056#1 CGCTCTTCATCGGGCAGGAGAATGGCACGATCTCGCAGTTCACGCTGTCGGACGACTGCC 292
consensus_6056#2 CGCTCTTCATCGGGCAGGAGAATGGCACGATCTCGCAGTTCACGCTGTCGGACGACTGC- 173
***********************************************************
consensus_6056#0 AACCGGCTGACGCCGATCCGGGAGTATCTGGCGCACCAGGCCCGCATCACCAGCGTCACG 1139
consensus_6056#1 AAACCCCTGACGCCGATCCGGGAGTTTCTGGCGCACCAGGCCCGCATCACCAGCGTCACG 352
consensus_6056#2 AACCGGCTGACGCCGATCCGGGAGTATCTGGCGCACCAGGCCCGCATCACCAGCGTCACG 233
** * ******************* **********************************
consensus_6056#0 TTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGGAAGGACAAGTTCTTCGCCTACCAC 1199
consensus_6056#1 TTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGGAAGGACAAGTTCTTCGCCTACCAC 412
consensus_6056#2 TTCGCCAAACACACCGGCTGGATCCTGTCGGTCGGGAAGGACAAGTTCTTCGCCTACCAC 293
************************************************************
consensus_6056#0 AGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGAGGCGATGTGTACTGCGTTG 1259
consensus_6056#1 AGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGAGGCGATGTGTACTGCGATG 472
consensus_6056#2 AGCACCGAAACGGGCGAGCGGATCGGTTGCTACACGTTCGAAGCGATGTGTACTGCGATG 353
***************************************** *************** **
consensus_6056#0 CAATACGACGCCTTATCAAAGTATGTGTTTGTGGGAGATTACAGCGGGCAAATAACGATG 1319
consensus_6056#1 CAATACGACGCCTTATCAAAGTATGTGTTTGTGGGAGATTACAGCGGGCAAATAACGATG 532
consensus_6056#2 CAATACGACGCCTTATCAAAGTATGTGTTTGTGGGAGATTACAGCGGGCAAATAACGATG 413
************************************************************
consensus_6056#0 CTGAAGCTGAGCGGCACCGGTGCCACGCTGGTCACCACGATGAAGGGCCACTCCGGCTCG 1379
consensus_6056#1 CTGAAGCTGAGCGGCACCGGTGCCACGCTGGTCACCACGATGAAGGGCCACTCCGGCTCG 592
consensus_6056#2 CTGAAGCTGAGCGGCACCGGTGCCACGCTGGTCACCACGATGAAGGGCCACTCCGGCTCG 473
************************************************************
consensus_6056#0 GTCCGCTCGCTGTACTGGGCCGAGGGGCCC-AGCTGCTGTTCAGTGGCTCCCAGGACCAG 1438
consensus_6056#1 GTCCGCTCGCTGTACTGGGCCGAGGGGCCCCAGCTGCTGTTCAGTGGCTCCCAGGACCAG 652
consensus_6056#2 GTCCGCTCGCTGTACTGGGCCGAGGGGCCCCAGCTGCTGTTCAGTGGCTCCCAGGACCAG 533
****************************** *****************************
consensus_6056#0 TCCGCGAC-----ACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACG 1493
consensus_6056#1 TCCGCGTC-----ACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACG 707
consensus_6056#2 TCCGTGATCGTGTGGGGACGTCGGTGGCAAGCGGGGAACCACCTACGAGCTGCATGGACA 593
**** * ** * * * *** **** ** * **
consensus_6056#0 TAA-AATGAC--------------------- 1502
consensus_6056#1 TAA-AATGACAAGTGGAAAAATAGAGTTTTA 737
consensus_6056#2 TAACAACAAAGTATCGT-------------- 610
*** ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||