These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1785 fasta sequence [CCGCCCACGCGTCCGCAACAGCAGCAGCAGCAGCGTAGTATGCAGCCCGAATCGCCCACCCAGACGTACGGTGCGTACAGCCCAACGTTCAGCGACATCGATCAGGTCAGCAGCTTCGCCACCGAGGACAACTCGCCGCTCAATCAGCGCCGGCCACAGAACGGCAACATGTCGCCGATGCCCAACACGAGCCGCAGCTACTACACCGGCGAGCAGGGCCAGACGCAACCGCTGGTCCAGAACGTCGGACTGCCCAACCGCATGGACAGCCGCTCGACGGAGGTGTAAGGAGTATGGTTTAGCATGGTAAAACCACGCCTGGAGACATCTTCCTTGTATCAGTATATGACAGGCACATAGAACACACACATTTACACAAACACAGACATACACACACAGACACACAGATGCCAATGGGTATGTGTTTTGAAAGGGTTTCTTTCTTCCCCACTTCCTCCCAGCACCCATCCCCCCCCCCCCCTAACTAACCATGGCAGGTTTGACAGGTAGAAGTTCGGTTTAGTTGCAAAAGCGCAGCACTAAGAAAATAGCTTAATATATCGGGCAGCAGTGCCCTTGCTAGGAAGAACGCAACCAGTTTCGCAGCAGTTGAAGTGTTAATCTTATCGTGTAAGGAATAGGAGCGCACCGAGAGCCGAGAGAGTACCTCTCAGCAGCAGCACAGAGGAGGCATTCTTGGAGGTCTGCAGAGATAAGATAAGGCACTCGCTAGACCACCTCGAACGGTGTGTGCTCGATTTCAGTGTTTTTTTTTTGTTCGCAATAAGCAGTATTTTAGATATCCTCCATTTTGGACAACACCTCAACAACTCGTACGAGTGTTGTTTTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAGAAAAAAAAACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCAGCTTCCCTTCCCCCGGCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTCTCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGAACGCGGGCACCTCGTTCGGTATCGTGCTGGTCATAGTCATCCCGATACTGCTGATCGTCATACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGCGTTAGACGAGTCTAGACAATTAAGAATCATCTTTCCCCCGCTCCTTCCGGTAGACTACTTCTCTAGGTCTATAATGTACTTTTTTCTATGTTTATTTTTAAGGGGTTTGTGTTTGAAAATGAAGATAGAGAAAGAGAGAGGGAGTAAACAAAACTCCTTTACGTCGCTTCTTTTAAGTTACATGTAGCGTCAGTGTCAACGCATTTTTTTTTCATCCTTTATTCTGTTTGGTGCATGGACACCGTGAGGCAAGCGAGCACGATAACAAGTAATCGCTGTACCGCTTCATACGCATTGTGAAGCACAGGCACAATGTTAGATATGATTGATATGCAATGACAACAACGGTGCCTCCCTCCGCACACAAACAGTGCAGTTTCAAGAAACGATGAATTCAAAGATAACGATTTGTTTGCTTGGACATATCACAACACAAAA] [+] EMBL BM635982 [CCGCCCACGCGTCCGCAACAGCAGCAGCAGCAGCGTAGTATGCAGCCCGAATCGCCCACCCAGACGTACGGTGCGTACAGCCCAACGTTCAGCGACATCGATCAGGTCAGCAGCTTCGCCACCGAGGACAACTCGCCGCTCAATCAGCGCCGGCCACAGAACGGCAACATGTCGCCGATGCCCAACACGAGCCGCAGCTACTACACCGGCGAGCAGGGCCAGACGCAACCGCTGGTCCAGAACGTCGGACTGCCCAACCGCATGGACAGCCGCTCGACGGAGGTGTAAGGAGTATGGTTTAGCATGGTAAAACCACGCCTGGAGACATCTTCCTTGTATCAGTATATGACAGGCACATAGAACACACACATTTACACAAACACAGACATACACACACAGACACACAGATGCCAATGGGTATGTGTTTTGAAAGGGTTTCTTTCTTCCCCACTTCCTCCCAGCACCCATCCCCCCCCCCCCCTAACTAACCATGGCAGGTTTGACAGGTAGAAGTTCGGTTTAGTTGCAAAAGCGCAGCACTAAGAAAATAGCTTAATATATCGGGCAGCAGTGCCCTTGCTAGGAAGAACGCAACCAGTTTCGCAGCAGTTGAAGTGTTAATCTTATCGTGTAAGGAATAGGAGCGCAC ] [-] EMBL BM636811 [ TTGCAAAAGCGCAGCACTAAGAAAATAGCTTAATATATCGGGCAGCAGTGCCCTTGCTAGGAAGAACGTAACCAGTTTCGCAGCAGTTGAAGTGTTAATCTTATCGTGTAAGGAATAGGAGCGCACCGAGAGCCGAGAGAGTACCTCTCAGCAGCAGCACAGAGGAGGCATTCTTGGAGGTCTGCAGAGATAAGATAAGGCACTCGCTAGACCACCTCGAACGGTGTGTGCTCGATTTCAGTGTTTTTTTTTTGTTCGCAATAAGCAGTATTTTAGATATCCTCCATTTTGGACAACACCTCAACAACTCGTACGAGTGTTGTTTTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAGAAAAAAAAACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCAGCTTCCCTTCCCCCGG ] [+] EMBL BM600510 [ ACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTCAGCAGCTTCCCCCCCCCCCCCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTCTCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGAACGCGGGCACCTCGTTCGGTATCGTGCTGGTCATAGTCATCCCGATACTGCTGATCGTCATACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGCGTTAGACGAGTCTAGACAATTAAGAATCATCTTTCCCCCGCTCCTTCCGGTAGACTACTTCTCTAGGTCTATAATGTACTTTTTTCTATGTTTATTTTTAAGGGGTTTGTGTTTGAAAATGAAGATAGAGAAAGAGAGAGGGAGTAAACAAAACTCCTTTACGTCGCTTCTTTTAAGTTACATGTAGCGTCAGT ] [+] EMBL BM575786 [ ccgAGCGTACGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGCGTTAGACGCGTCTAGACAATTAAGGATCATCTTTCCCCCGCTCCTTCCAGTAGACTACTTCTCTAGGTCTATAATGTACTTTTTTCTATGCTTATTTTTAAGGGGTTTGTGTTTGAAAATGAAGATAGAGAAAGAGAGAGGGAGGAAACAAAACTCCTTTACGTCGCTTCTTTTAAGTTACATGTAGCGTCAGTGTCAACGCATTTTTTTTTCATCCTTTATTCTGTTTGGTGCATGGACACCGTGAGGCAAGCGAGCACGATAACAAGTAATCGCTGTACCGCTTCATACGCATTGTGAAGCACAGGCACAATGTTAGATATGATTGATATGCAATGACAACAACGGTGCCTCCCTCCGCACACAAACAGTGCAGTTTCAAGAAACGATGAATTCAAAGATAACGATTTGTTTGCTTGGACATATCACAACACAAAA] consensusID : consensus_6058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCCGAGGTTACACACCTCAACAACTCGTACGAGTGTGTTGTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAAAAAAAAAACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCAGCTCCCCCCCCCCTCCTCCTCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTCTCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGAACGCGGGCACCTCGTTCGGTATCGTTGGTCATAGTCATCCCGATACTGCTGATCGTCATACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGACGATAGACGCGTCTAGACAATTAAGGATCATCTTTCCCCCGCTCCTTCCAGTAGACTACATTCTCTAGGTCTATAATGTACTTTTCTATGTNTATAT] [+] EMBL AL930283 [CCCGAGGTTACACACCTCAACAACTCGTACGAGTGTGTTGTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAAAAAAAAAACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCAGCTCCCCCCCCCCTCCTCCTCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTCTCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGAACGCGGGCACCTCGTTCGGTATCGTTGGTCATAGTCATCCCGATACTGCTGATCGTCATACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGACGATAGACGCGTCTAGACAATTAAGGATCATCTTTCCCCCGCTCCTTCCAGTAGACTACATTCTCTAGGTCTATAATGTACTTTTCTATGTNTATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6058#0 CCGCCCACGCGTCCGCAACAGCAGCAGCAGCAGCGTAGTATGCAGCCCGAATCGCCCACC 60 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 CAGACGTACGGTGCGTACAGCCCAACGTTCAGCGACATCGATCAGGTCAGCAGCTTCGCC 120 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 ACCGAGGACAACTCGCCGCTCAATCAGCGCCGGCCACAGAACGGCAACATGTCGCCGATG 180 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 CCCAACACGAGCCGCAGCTACTACACCGGCGAGCAGGGCCAGACGCAACCGCTGGTCCAG 240 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 AACGTCGGACTGCCCAACCGCATGGACAGCCGCTCGACGGAGGTGTAAGGAGTATGGTTT 300 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 AGCATGGTAAAACCACGCCTGGAGACATCTTCCTTGTATCAGTATATGACAGGCACATAG 360 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 AACACACACATTTACACAAACACAGACATACACACACAGACACACAGATGCCAATGGGTA 420 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 TGTGTTTTGAAAGGGTTTCTTTCTTCCCCACTTCCTCCCAGCACCCATCCCCCCCCCCCC 480 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 CTAACTAACCATGGCAGGTTTGACAGGTAGAAGTTCGGTTTAGTTGCAAAAGCGCAGCAC 540 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 TAAGAAAATAGCTTAATATATCGGGCAGCAGTGCCCTTGCTAGGAAGAACGCAACCAGTT 600 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 TCGCAGCAGTTGAAGTGTTAATCTTATCGTGTAAGGAATAGGAGCGCACCGAGAGCCGAG 660 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 AGAGTACCTCTCAGCAGCAGCACAGAGGAGGCATTCTTGGAGGTCTGCAGAGATAAGATA 720 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 AGGCACTCGCTAGACCACCTCGAACGGTGTGTGCTCGATTTCAGTGTTTTTTTTTTGTTC 780 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 GCAATAAGCAGTATTTTAGATATCCTCCATTTTGGACAACACCTCAACAACTCGTACGAG 840 consensus_6058#1 ------------------------CCCGAGGTTACACA---CCTCAACAACTCGTACGAG 33 * * * ** *** ******************* consensus_6058#0 TGTTGTTTTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAGAAAAAAA 900 consensus_6058#1 TGT-GTTGTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAA-AAAAAAA 91 *** *** ******************************************** ******* consensus_6058#0 AACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTAC 960 consensus_6058#1 AACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTAC 151 ************************************************************ consensus_6058#0 CAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCA 1020 consensus_6058#1 CAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCA 211 ************************************************************ consensus_6058#0 GCTTCCCTTCCCC----CGGCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTC 1076 consensus_6058#1 GCTCCCCCCCCCCTCCTCCTCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTC 271 *** *** **** * **************************************** consensus_6058#0 TCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGA 1136 consensus_6058#1 TCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGA 331 ************************************************************ consensus_6058#0 ACGCGGGCACCTCGTTCGGTATCGTGCTGGTCATAGTCATCCCGATACTGCTGATCGTCA 1196 consensus_6058#1 ACGCGGGCACCTCGTTCGGTATCGT--TGGTCATAGTCATCCCGATACTGCTGATCGTCA 389 ************************* ********************************* consensus_6058#0 TACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCA 1256 consensus_6058#1 TACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCA 449 ************************************************************ consensus_6058#0 ATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGT 1316 consensus_6058#1 ATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGT 509 ************************************************************ consensus_6058#0 GCAGTTGCCACATCGATTCACTAAGCTTAG-CGTTAGACGAGTCTAGACAATTAAGAATC 1375 consensus_6058#1 GCAGTTGCCACATCGATTCACTAAGCTTAGACGATAGACGCGTCTAGACAATTAAGGATC 569 ****************************** ** ****** *************** *** consensus_6058#0 ATCTTTCCCCCGCTCCTTCCGGTAGACTAC-TTCTCTAGGTCTATAATGTACTTTTTTCT 1434 consensus_6058#1 ATCTTTCCCCCGCTCCTTCCAGTAGACTACATTCTCTAGGTCTATAATGTACTTTTCTAT 629 ******************** ********* ************************* * * consensus_6058#0 ATGTTTATTTTTAAGGGGTTTGTGTTTGAAAATGAAGATAGAGAAAGAGAGAGGGAGTAA 1494 consensus_6058#1 GTNTATAT---------------------------------------------------- 637 * * *** consensus_6058#0 ACAAAACTCCTTTACGTCGCTTCTTTTAAGTTACATGTAGCGTCAGTGTCAACGCATTTT 1554 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 TTTTTCATCCTTTATTCTGTTTGGTGCATGGACACCGTGAGGCAAGCGAGCACGATAACA 1614 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 AGTAATCGCTGTACCGCTTCATACGCATTGTGAAGCACAGGCACAATGTTAGATATGATT 1674 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 GATATGCAATGACAACAACGGTGCCTCCCTCCGCACACAAACAGTGCAGTTTCAAGAAAC 1734 consensus_6058#1 ------------------------------------------------------------ consensus_6058#0 GATGAATTCAAAGATAACGATTTGTTTGCTTGGACATATCACAACACAAAA 1785 consensus_6058#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||