These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1193 fasta sequence [CAGATNGCCCCCAGGGTATGGAGAAGCAATTCGTTCCCGGAGTCAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACACCCCAAATAAACCAGAATGCGGCAGCAGACCCCTGCAGAGAATGGGGGCAGCCGTCCCAAAAGAACCGAGCTGCAAGGGAAGCTTCCAAAATTGAAAACCAGCAAGCAAGGGGTTGGGTCCGATTGAAGGTTCCCCTTGAACAAGGTAACCCGGCCGGTTAATTGCTGGGCACCTTAATTGGTTGAAGGGGAGGAGGCACCTTGAGGTTGGGGAAATTTGCGGAAACCCAATTCCGGTTACAAATTGCCTGGGAATGGAAACCAAAGGGAAGGAAACCAAACCTTGGGAACCCGNAAATTCGCAAGGGGCAAGGGGCCATTGGAAACCCAAGAATTCAAAATTGGGCGCCGGGAACAATTGGCGGTTGCAAAGGGGCCTTCGGAAAAACANGGAACAATTCTTGAAGCCGGGCCATTGGTGACAANACAAAATTGGCCTTGGCGGGGTTAATTTCCTTTGGTTTGGTTCCTTTTAAACCCCCTGGTTTTGGCCCAGAGACCCAAAAGGAAAGATTTGGCCAANTTCCCCCTTTTTTCCAANAAATGGAAACGCTGGGAACCGGAAACACTGTGTGGTTAAACCCCCNTTAGGGGCACAAAGGAGCGGGGCCAGACACACCTGGCGAAGTTTGNAACCTGTGAGGCCANACATGCAGTGTGCGGGGTTAAAACAACCTCAAAATACGCCCAANGAGGACCCCCCCCAATGTGCCGGGAAACGCTGTGAAAATTGGGGTCGAACCCGGAAATTCCCGGCAAAAACGGGGGAACTTTTTGGGGGGGCCCCCCGGTCCAANGGGGGCCCTTTNGGGCCTTTAAACCCAATTTCCCAAAGGGAATTTCCCAAAAAGGAACCGCGGAAGATGAGATGAGGAGACTGGCCAGTGACACGATGATCGGTATCTGCGAACATGGGCTCGATATGGTCGATGGGACGACGACGTCGCGATCATCGCAGGTCATGAGCCGTAAGGGCATGAAGCCCTTCCANAAGNCGTTTTGGTTATANCCTCTCTCTTATTAAAAATGTCTCCGTCTCACTCTNNT] [+] EMBL AL693545 [CAGATNGCCCCCAGGGTATGGAGAAGCAATTCGTTCCCGGAGTCAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACACCCCAAATAAACCAGAATGCGGCAGCAGACCCCTGCAGAGAATGGGGGCAGCCGTCCCAAAAGAACCGAGCTGCAAGGGAAGCTTCCAAAATTGAAAACCAGCAAGCAAGGGGTTGGGTCCGATTGAAGGTTCCCCTTGAACAAGGTAACCCGGCCGGTTAATTGCTGGGCACCTTAATTGGTTGAAGGGGAGGAGGCACCTTGAGGTTGGGGAAATTTGCGGAAACCCAATTCCGGTTACAAATTGCCTGGGAATGGAAACCAAAGGGAAGGAAACCAAACCTTGGGAACCCGNAAATTCGCAAGGGGCAAGGGGCCATTGGAAACCCAAGAATTCAAAATTGGGCGCCGGGAACAATTGGCGGTTGCAAAGGGGCCTTCGGAAAAACANGGAACAATTCTTGAAGCCGGGCCATTGGTGACAANACAAAATTGGCCTTGGCGGGGTTAATTTCCTTTGGTTTGGTTCCTTTTAAACCCCCTGGTTTTGGCCCAGAGACCCAAAAGGAAAGATTTGGCCAANTTCCCCCTTTTTTCCAANAAATGGAAACGCTGGGAACCGGAAACACTGTGTGGTTAAACCCCCNTTAGGGGCACAAAGGAGCGGGGCCAGACACACCTGGCGAAGTTTGNAACCTGTGAGGCCANACATGCAGTGTGCGGGGTTAAAACAACCTCAAAATACGCCCAANGAGGACCCCCCCCAATGTGCCGGGAAACGCTGTGAAAATTGGGGTCGAACCCGGAAATTCCCGGCAAAAACGGGGGAACTTTTTGGGGGGGCCCCCCGGTCCAANGGGGGCCCTTTNGGGCCTTTAAACCCAATTTCCCAAAGGGAATTTCCCAAAAAGGAACCGCGGAAGATGAGATGAGGAGACTGGCCAGTGACACGATGATCGGTATCTGCGAACATGGGCTCGATATGGTCGATGGGACGACGACGTCGCGATCATCGCAGGTCATGAGCCGTAAGGGCATGAAGCCCTTCCANAAGNCGTTTTGGTTATANCCTCTCTCTTATTAAAAATGTCTCCGTCTCACTCTNNT] consensusID : consensus_6065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 759 fasta sequence [CCGCGGACGCGTGGGCGTTCCCGGAGTCAAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCAAGGAAGCCGGGATTCGAACCCTGGTGGCCCTTGACGATCAGGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGTGCAACAAGAGTGCATCCTTCAAAGAGGACGACGGATACCTGGAAGGGCAACGATGACGGCAAGGTGGTGAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGCAGGCTGGCTACATCGGAAGGATCACGAACGACGCCCGGGAAGATGAGATGGAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGATATGGGCTCCGAGCT-GGAGAACCAGAACAGACAGATCGACAGAATCAATCGCAAGGGAGATTCCAACGCCACCAGGATAGCGGCT] [+] EMBL BM591032 [CCGCGGACGCGTGGGCGTTCCCGGAGTCAAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCACTGAGGTGGGAATGCGAACCATCGTAATGCTGGATGAACAAGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGTGCAACAAGAGTGCATCCTTCAAAGAGGACGACGGATACCTGGAAGGGCAACGATGACGGCAAGGTGGTGAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGCAGGCTGGCTACATCGGAAGGATCACGAACGACGCCCGGGAAGATGAGATGGAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGATATGGGCTCC ] [+] EMBL BM653394 [ ccgCGGAGTCAAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCAAGGAAGCCGGGATTCGAACCCTGGTGGCCCTTGACGATCAGGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATC ] [+] EMBL BM627216 [ ccgGTCAAGAGGTGAAAATTGTGTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCAAGGAAGCCGGGATTCGAACCCTGGTGGCCCTTGACGATCAGGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGTGCAACAAGAGTGCATCCTTCAAAGAGGACGACGGTTACCTGGAAGGGCAACGATGACGGCAAGGTGGTGAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGCAGGCTGGCTACATCGGAAGGATCACGAACGACGCCCGGGAAGATGAGATGGAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGATATGGGCTCCGAGCT GGAGA ] [+] EMBL BM634849 [ ccgCGAAGCAGCTCGTTAACTCTTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCACCCCCCGCAGAGAATGGGGCAGCCGTCCCAAAGACCGAGCTGCAGGAGCTCCAAATGAAACAGCAGCAGGTGGTCGATGAGTCCCTGGACAGTACCCGCCGTATGCTGGCACTATGTGAGGAGAGCAAGGAAGCCGGGATTCGAACCCTGGTGGCCCTTGACGATCAGGGAGAACAACTGGACCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGCGTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGTGCAACAAGAGTGCATCCTTCAAAGAGGACGACGG TACCTGGAAGGGCAACGATGACGGCAAGGTGGTAAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGCAGGCTGGCTACATCGGAAGGATCACGAACGACGCCCGGGAAGATGAGATGGAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGATATGGGCTCCGAGCTGGGAGAACCAGAACAGACAGATCGACAGAATCAATCGCAAGGGAGATTCCAACGCCACCAGGATAGCGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6065#0 CAGATNGCCCCCAGGGTATGGAGAAGCAATTCGTTCCCGGAGTCA-GAGGTGAAAATTGT 59 consensus_6065#1 ---------------CCGCGGACGCGTGGG-CGTTCCCGGAGTCAAGAGGTGAAAATTGT 44 *** * ************** ************** consensus_6065#0 GTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTC 119 consensus_6065#1 GTCTGCGTCAAACTTTTCCAAAACCTCTGTCGATCGCTTTCCGAAGCAGCTCGTTAACTC 104 ************************************************************ consensus_6065#0 TTCAACGCTTTAACTCTCCTCGTAAC-ACCCCAAA-TAAACCAGAATGC-GGCAGCAGA- 175 consensus_6065#1 TTCAACGCTTTAACTCTCCTCGTAACCACCCCAAACTAAACCAGAATGCCGGCAGCAGCA 164 ************************** ******** ************* ******** consensus_6065#0 -CCCCTGCAGAGAATGGGGGCAGCCGTCCCAAAAGAACCGAGCTGCAAGGGAAGCTTCCA 234 consensus_6065#1 CCCCCCGCAGAGAATGGGG-CAGCCGTCCCAAAG--ACCGAGCTGCAGG---AGCTCC-- 216 **** ************* ************* *********** * **** * consensus_6065#0 AAATTGAAAACCAGCAAGCAAGGGGTTGGGTCCGATTGAAGGTTCCCCTTGAACAAGGTA 294 consensus_6065#1 AAATGAAACAGCAGCAGGTGGTCGATGAGTCCC--TGGACAGTACCCGCCGTAT--GCTG 272 **** ** * ***** * * * * ** * ** ** *** * * * * consensus_6065#0 ACCCGGCCGGTTAATTGCTGGGCACCTTAATTGGTTGAAGGGGAGGAGGCACCTTGAGGT 354 consensus_6065#1 GCACTATGTGAGGAGAGCAAGGAAGCCGG---GATTCGAACCCTGGTGGCCCTTGACGAT 329 * * * * ** ** * * * ** * ** *** * * * * consensus_6065#0 TGGGGAAATTTGCGGAAACCCAATTCCGGTTACAAATTGCCTGGG--AATGGAAACCAAA 412 consensus_6065#1 CAGGGAGAACAACTGGA--CCGAATCGAGGAGGGCATGGACCAGATCAATGCCGACATGC 387 **** * * * * ** * ** * ** * * * **** ** consensus_6065#0 GGGAAGG-AAACCAAACCTTGGGAACCCGNAAATTCGCAAGGGGCAAGGGGCCATTGGAA 471 consensus_6065#1 GTGAGGCTGAAAAGAATCTGAGCGGCATGGAAAAATGCTGCGGTATCTGTGTCTTACCGT 447 * ** * ** ** ** * * * *** ** ** * * * * consensus_6065#0 ACC-CAAGAATTCAAAATTGGGCGCCGGGAACAATTGGCGGTTGCAAAGGGGCCTTCGGA 530 consensus_6065#1 GCAACAAGAGTGCATCCTTCAAAGAGGACGACGGATACCTGGAAGGGCAACGATGACGGC 507 * ***** * ** ** * * ** * * * * *** consensus_6065#0 AAAACANGGAACAATTCTTGAAGCCGGGCCATTGGTGACAANACAAAATTGGCCTTGGCG 590 consensus_6065#1 AAGGTGGTGAACAACCAGCCCCAGCGAGTGATGGACGATCGCAACGGATTGGGCCCGC-- 565 ** ****** ** * ** * ** * ***** * * consensus_6065#0 GGGTTAATTTCCTTTGGTTTGGTTCCTTTTAAACCCCCTGGTTTTGGCCCAGAGACCCAA 650 consensus_6065#1 AGGCTGGCTACATCGGA--AGGATCACGAACGACGCCCGGGA--------AGATGAGATG 615 ** * * * * * ** ** ** *** ** *** consensus_6065#0 AAGGAAAGATTTGGCCAANTTCCCCCTTTTTTCCAANAAATGGAAACGCTGGGAACCGGA 710 consensus_6065#1 GAGGAGAACATGGGCCAGGTGAACACGATGATCGGTAATCTGCGAAACATGGCGCTCGAT 675 **** * * ***** * * * * ** * ** ** *** ** consensus_6065#0 AACACTGTGTGGTTAAACCCCCNTTAGGGGCACAAAGGAGCGGGGCCAGACACACCTGGC 770 consensus_6065#1 ATGGGCTCCGAGCTGGAGAACCAGAACAG--ACAGATCGACAGAATCAATCGCA---AGG 730 * * * * ** * * *** * * * ** * ** * consensus_6065#0 GAAGTTTGNAACCTGTGAGGCCANACATGCAGTGTGCGGGGTTAAAACAACCTCAAAATA 830 consensus_6065#1 GAGATTCCAACGCCACCAGGATAGCGGCT------------------------------- 759 ** ** * * *** * consensus_6065#0 CGCCCAANGAGGACCCCCCCCAATGTGCCGGGAAACGCTGTGAAAATTGGGGTCGAACCC 890 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 GGAAATTCCCGGCAAAAACGGGGGAACTTTTTGGGGGGGCCCCCCGGTCCAANGGGGGCC 950 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 CTTTNGGGCCTTTAAACCCAATTTCCCAAAGGGAATTTCCCAAAAAGGAACCGCGGAAGA 1010 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 TGAGATGAGGAGACTGGCCAGTGACACGATGATCGGTATCTGCGAACATGGGCTCGATAT 1070 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 GGTCGATGGGACGACGACGTCGCGATCATCGCAGGTCATGAGCCGTAAGGGCATGAAGCC 1130 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 CTTCCANAAGNCGTTTTGGTTATANCCTCTCTCTTATTAAAAATGTCTCCGTCTCACTCT 1190 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 NNT 1193 consensus_6065#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||