These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 995 fasta sequence [TTTTCTTACATTATTTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGACTTTGTTTTTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAAATCGTATGTGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGGAGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTA-AAATAG-AG-CGAATAT-TTGCGATATCGAA-CCAGCCG-CTTCAGCAGCAGCT-GACTTAAGCA-AACT-AAGCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTG-CATAG-AAGGAAGAGACGAGGCGA-CACGAACAAAAC-AAAGCAAAAAAGCAACTAATAT-CTACGAAACAAAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGAACAAACTCT-CGATATATGACGATGCTGATGATGATGATAATGAAGATGAAAC-ATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGT-GAACGGATGGAAAAATTAAAAAAAGGGCAGCATG] [+] EMBL AGA285101 [TTTTCTTACATTATTTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGACTTTGTTTTTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAAATCGTATGTGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGGAGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTA AAATAG AA CGAATAT TT ] [+] EMBL BX627374 [ TCCCAATTGGAGGAATAGGAGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTA AAATAG AG CGAATAT TTGCGATATCGAA CCAGCCG CTTCAGCAGCAGCT GACTTAAGCA AACT AAGCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTG CATAG AAGGAAGAGACGAGGCGA CACGAACAAAAC AAAGCAAAAAAGCAACTAATAT CTACGAAACAAAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGAACAAACTCT CGATATATGACGATGCTGATGATGATGATAATGAAGATGAAAC ATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGT GAACG ] [-] EMBL BX466810 [ atcCAATTACATTTCATCCCAACCTATAAANAGCAGCCGAATATGTTGCGATATCGAATCCAGCCGTCTTCAGCAGCAGCTGGACTTAAGCATAACTCAAGCGAGNAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTGTCATAGCAAGGAAGAGACGAGGCGAGCACGGACCAAACGATAGCAAAAAAGCAACTAATATCCTACGAAACATAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAG AAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGGACNNACTCTGCGATATATGACGATGCTGATGATGATGATAATGAAGATGAAACTATGGAAAATGAATGATGGAATAAACCCGTATTCACATGATCGTGTGGAAC GATGGAAAAATTAAAAAAAGGGCAGCATG] [-] EMBL AGA283810 [ CTATTTTCTCTGCAACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTG CATAG AAGGAAGAGACGAGGCGA CACGAACAAAAC AAAGCAAAAAAGCAACTAATAT CTACGAAACAAAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGAACAAACTCT CGATATATGACGATGCTGATGATGATGATAATGAAGATGAAAC ATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGT GAAACGATGAAATAAaa ] consensusID : consensus_6066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTATTTCTTTGCTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTTTTGCTATTGCGTTGCGTAAA] [+] EMBL AL930703 [CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTATTTCTTTGCTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTTTTGCTATTGCGTTGCGTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6066#0 ----------------------------------------------TTTTCTTACATTAT 14 consensus_6066#1 CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTAT 60 ********* **** consensus_6066#0 TTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGC 74 consensus_6066#1 TTCTTTG--CTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGC 118 ****** ************************************************** consensus_6066#0 TTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGAC------TTTGTTT 128 consensus_6066#1 TTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTT 178 ******************************************** ** ****** consensus_6066#0 TTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAAATCGTATG 188 consensus_6066#1 TTGCTATTGCGTTGCGTAAA---------------------------------------- 198 ******************** consensus_6066#0 TGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGGAGCGTGAG 248 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 ACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTT 308 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 ATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTG 368 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 CGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATA 428 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 GCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTAAAATA 488 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 GAGCGAATATTTGCGATATCGAACCAGCCGCTTCAGCAGCAGCTGACTTAAGCAAACTAA 548 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 GCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATC 608 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 GGTCGGTCGGGTGCAGTGCATAGAAGGAAGAGACGAGGCGACACGAACAAAACAAAGCAA 668 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 AAAAGCAACTAATATCTACGAAACAAAACTACAATATTACACAGAAACACACACATATAT 728 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 ACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGG 788 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 AAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGA 848 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 TGATTGGACTAAACGAACAAACTCTCGATATATGACGATGCTGATGATGATGATAATGAA 908 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 GATGAAACATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGTGAACGGA 968 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 TGGAAAAATTAAAAAAAGGGCAGCATG 995 consensus_6066#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||