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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 742 fasta sequence
[GCAGAATNGCCCGAGGTTATTCACTGTGAGCTTGAAGACCGTGGCACGCGCGACTGTTACGCAGTCGGGCACGCCAGCGTTTGGGACAAATTTAGCTGTTCGCCTGAAGTGCTGCCTCCGTGAACCTTCGTCGAACTATATACCTGCGGAACAGATATCGACGTGAGCTCTTGTCTTGTGTGCAAAGGAAAGTGTGTCAGTTGCTCGGGTGCGGTGTAGTGCAGCAGCACGGTTCACGGTTCCGGTTTGATAGTTGCCAAAGTGTGTGCCTTTGATAACAGGTTAGCTNTCGTGTNGGAACGTTTCCAGCCTGCAAGTGTGACTACAGTGTTGTGGCATTCGAAGCGACCATATTCTTCTATAAACGAGATGTGACGGAATCTGCCGTCTCGCTAGCCTTCGAGAACGACGACTCCCCAAACCTTCCCCTTCCAGAAAAGCACTGCAATGTCGTCGTCCGGTGCGACCAAGAGCAAGCCGAAGAAGAACAGCAATCTGCGCATACTGTGGATACCGGGGCGCAAAAAGCACAACCGCAAGGGTTCGTACAGCACGACGAAGAATGGGCTGCCGCAGACGTACGGGATGCAGCCGCGCAAGAACGAATCGTGGACGCTTGGCGGCGCGATGAATCATAGCAAAATTATAAATGCAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACG]
[+] EMBL AL930279 [GCAGAATNGCCCGAGGTTATTCACTGTGAGCTTGAAGACCGTGGCACGCGCGACTGTTACGCAGTCGGGCACGCCAGCGTTTGGGACAAATTTAGCTGTTCGCCTGAAGTGCTGCCTCCGTGAACCTTCGTCGAACTATATACCTGCGGAACAGATATCGACGTGAGCTCTTGTCTTGTGTGCAAAGGAAAGTGTGTCAGTTGCTCGGGTGCGGTGTAGTGCAGCAGCACGGTTCACGGTTCCGGTTTGATAGTTGCCAAAGTGTGTGCCTTTGATAACAGGTTAGCTNTCGTGTNGGAACGTTTCCAGCCTGCAAGTGTGACTACAGTGTTGTGGCATTCGAAGCGACCATATTCTTCTATAAACGAGATGTGACGGAATCTGCCGTCTCGCTAGCCTTCGAGAACGACGACTCCCCAAACCTTCCCCTTCCAGAAAAGCACTGCAATGTCGTCGTCCGGTGCGACCAAGAGCAAGCCGAAGAAGAACAGCAATCTGCGCATAC ]
[+] EMBL CNS08P9P [ GGTTTGAAAGTGGCCAAAGTGTGTGCCTTTGATAACAGGTTAGCT TCGTGTTGGAACGTTTCCAGCCTGCAAGTGTGACTACAGTGTTGTGGCATTCGAAGCGACCATATTCTTCTATAAACGAGATGTGACGGAATCTGCCGTCTCGCTAGCCTTCGAGAACGACGACTCCCCAAACCTTCCCCTTCCAGAAAAGCACTGCAATGTCGTCGTCCGGTGCGACCAAGAGCAAGCCGAAGAAGACCAGCAATCTGCGCATACTGTGGATACCGGGGCGCAAAAAGCACAACCGCAAGGGTTCGTACAGCACGACGAAGAATGGGCTGCCGCAGACGTACGGGATGCAGCCGCGCAAGAACGAATCGTGGACGCTTGGCGGCGCGATGAATCATAGCAAAATTATAAATGCAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACG]
consensusID : consensus_6068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[CCGCGGATTCAATCGTTCGCAATTGTTACATTGCTCGTGTGAAGCCTTTTTTTGGTTTGTTTGGAAGCCGTTAAAGATGGAACTGGTCATTGTACCTTGCTATCGGTTTGGGTCAAAATCTAGCATCGGATTGCCAAGGTCTGTGTGTGTGTGTGTGTGGCGGTGAAGCATCCAAATCGAAACAGACCGCGTGCGTGCGAGTTTTCGCGTGTCGTCCCGCTTCTTTACGCGCGACCCTACAGTTCCGACGATTGTTGTAGCAATTTCTTTTTCAGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAGATAGTGGTGGGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAGGAAAAGGAGATCGGCACGAGCAACCAGTTCGAGACGCTCACCCTGATCGACGAGGACGACGAGGAGGAACAGGATCGGAACTGCTCGAACGCACATTCCTCCT]
[+] EMBL BM586789 [CCGCGGATTCAATCGTTCGCAATTGTTACATTGCTCGTGTGAAGCCTTTTTTTGGTTTGTTTGGAAGCCGTTAAAGATGGAACTGGTCATTGTACCTTGCTATCGGTTTGGGTCAAAATCTAGCATCGGATTGCCAAGGTCTGTGTGTGTGTGTGTGTGGCGGTGAAGCATCCAAATCGAAACAGACCGCGTGCGTGCGAGTTTTCGCGTGTCGTCCCGCTTCTTTACGCGCGACCCTACAGTTCCGACGATTGTTGTAGCAATTTCTTTTTCAGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAGATAGTGGTGGGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAGGAAAAGGAGATCGGCACGAGCAACCAGTTCGAGACGCTCACCCTGATCGACGAGGACGACGAGGAGGAACAGGATCGGAACTGCTCGAACGCACATTCCTCCT]
consensusID : consensus_6068#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[CCGGCGAGTTGATCGATGGCGTCCGCGAGTCGTGTGCTGCTGCTGCCGTTGCTGCCGTTACGCTAATTTTTGTCGGCACTTGGGGCCAAAGGTGACCCCCGTTGCACTAGGCGGCAGCAGTTCGTTCGCCAGAGTAACAGTGTGGCGCGCGTTTTGGGGGAGATCTGGGGGAACACCGCTCGGATGGTGGATTGTGTGTTGAAGGTGGCCAGGAGGACGTTTCAATTTCGATGATAGTGTTTTTGTTTTGTTGTTTTCCACCATGATGATGATGATCAAACAGCAGAAAGCCCGAAAGCAGGAACCGATACAGCGGGTGCGGGTCGTGTTACGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAGATAGTGGTGGGCACGATAGAGCTGAACAATTT]
[+] EMBL BM578024 [CCGGCGAGTTGATCGATGGCGTCCGCGAGTCGTGTGCTGCTGCTGCCGTTGCTGCCGTTACGCTAATTTTTGTCGGCACTTGGGGCCAAAGGTGACCCCCGTTGCACTAGGCGGCAGCAGTTCGTTCGCCAGAGTAACAGTGTGGCGCGCGTTTTGGGGGAGATCTGGGGGAACACCGCTCGGATGGTGGATTGTGTGTTGAAGGTGGCCAGGAGGACGTTTCAATTTCGATGATAGTGTTTTTGTTTTGTTGTTTTCCACCATGATGATGATGATCAAACAGCAGAAAGCCCGAAAGCAGGAACCGATACAGCGGGTGCGGGTCGTGTTACGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAGATAGTGGTGGGCACGATAGAGCTGAACAATTT]
consensusID : consensus_6068#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence
[AGAATCGCACGAGGTGTAGAACGATACAGCGGGTGCGGNTCGTGTTACGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAATAGTGGTGGGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAGCAGGAAAAGGAGATCGGCACGGAGCAACCAGTTCGAGACGCTCACCCTGATCGACGAAGACGACGGAGGAGGAACAGGATCGGAACTGCTCGAACGCACACTCCTCCTCGTCAT]
[+] EMBL BX466193 [AGAATCGCACGAGGTGTAGAACGATACAGCGGGTGCGGNTCGTGTTACGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAATAGTGGTGGGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAGCAGGAAAAGGAGATCGGCACGGAGCAACCAGTTCGAGACGCTCACCCTGATCGACGAAGACGACGGAGGAGGAACAGGATCGGAACTGCTCGAACGCACACTCCTCCTCGTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6068#1 ------------------------------------------------------------
consensus_6068#3 ------------------------------------------------------------
consensus_6068#2 -----------------------CCGGCGAGTTGATCGATGGCGTCCGCGAGTCGTGTGC 37
consensus_6068#0 GCAGAATNGCCCGAGGTTATTCACTGTGAGCTTGAAGACCGTGGCACGCGCGACTGTTAC 60
consensus_6068#1 --------------CCGCGGATTCAATCGTTCGCAATTGTTACATTGCT-----CGTGTG 41
consensus_6068#3 ------------------------------------------------------------
consensus_6068#2 TGCTGCTGCCGTTGCTGCCGTTACGCTAATTTTTG-TCGGCACTTGGGG-----CCAAAG 91
consensus_6068#0 GCAGTCGGGCACGCCAGCGTTTGGGACAAATTTAGCTGTTCGCCTGAAGTGCTGCCTCCG 120
consensus_6068#1 AAGCCTTTTTTTGGTTTGTTTGGAAGCCGTTAAAGATGGAACTGGTCATTGTACCTTGCT 101
consensus_6068#3 ------------------------------------------------------------
consensus_6068#2 GTGACCCCCGTTGCACTAGGCGGCAGCAGTTCGTTCGCCAGAGTAACAGTGTGGCGCGCG 151
consensus_6068#0 TGAACCTTCGTCGAACTATATACCTGCGGAACAGATATCGACGTGAGCTCTTGTCTTGTG 180
consensus_6068#1 ATCGGTTTGGGTCAAAATCTAGCATCGGATTGCCAA-GGTCTGTGTGTGTGTGTGTGTGG 160
consensus_6068#3 ------------------------------------------------------------
consensus_6068#2 TTTTGGGGGAGATCTGGGGGAACACCGCTCGGATGGTGGATTGTGTGTTGAAGGTGGCCA 211
consensus_6068#0 TGCAAAGGAAAGTGTGTCAG----TTGCTCGGGTGCGGTGTAGTGCAGCAGCACGGTTCA 236
consensus_6068#1 CGGTGAAGCATCCAAATCGA-AACAGACCGCGTGCGTGCGA----GTTTTCGCGTGTCGT 215
consensus_6068#3 ------------------------------------------------------------
consensus_6068#2 GGAGGACGTTTCAATTTCGATGATAGTGTTTTTGTTTTGTT----GTTTTCCACCATGAT 267
consensus_6068#0 CGGTTCCGGTTTGATAGTTGCCAAAGTGTGTGCCTTTGATAACAGGTTAGCTNTCGTGTN 296
consensus_6068#1 CCCGC-TTCTTTACGCGCGA----CCCTACAGTTCCGAC-GATT--GTTGTAGCAATTTC 267
consensus_6068#3 -------------AGAATCG----CACGAGGTGTAGAAC-GATACAGCGGGTGCGGNTCG 42
consensus_6068#2 GATGA-TGATCAAACAGCAGAAAGCCCGAAAGCAGGAACCGATACAGCGGGTGCGGGTCG 326
consensus_6068#0 GGAACGTTTCCAGCCTGCAAGTGTGACTACAGTGTTGTGGCATTCGAAGCGACCATATTC 356
* * ** * *
consensus_6068#1 TTTTTCA---GAGATCTGCACGAGAACAACC-------TGGACGTGGCGAGCATCG--TG 315
consensus_6068#3 TGTTAC----GAGATCTGCACGAGAACAACC-------TGGACGTGGCGAGCATCG--TG 89
consensus_6068#2 TGTTAC----GAGATCTGCACGAGAACAACC-------TGGACGTGGCGAGCATCG--TG 373
consensus_6068#0 TTCTATAAACGAGATGTG-ACGGAATCTGCCGTCTCGCTAGCCTTCGAGAACGACGACTC 415
* * ***** ** *** * * ** * * * * * ** * ** *
consensus_6068#1 ACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATG-----GTCAAAGCCAACGAACCGC 370
consensus_6068#3 ACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATG-----GTCAAAGCCAACGAACCGC 144
consensus_6068#2 ACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATG-----GTCAAAGCCAACGAACCGC 428
consensus_6068#0 CCCAAACCTTCCCCTTCCAG-AAAAGCACTGCAATGTCGTCGTCCGGTGCGACCAAGAGC 474
* * * ** ** *** * * ** *** *** * ** ** **
consensus_6068#1 CGACCGTTGAAGGGCAGCAG-CAGCTTGATCAGCAGCTATCGAA-CGAACCCTGCCCATC 428
consensus_6068#3 CGACCGTTGAAGGGCAGCAG-CAGCTTGATCAGCAGCTATCGAA-CGAACCCTGCCCATC 202
consensus_6068#2 CGACCGTTGAAGGGCAGCAG-CAGCTTGATCAGCAGCTATCGAA-CGAACCCTGCCCATC 486
consensus_6068#0 AAGCCGAAGAAGAACAGCAATCTGCGCATACTGTGGATACCGGGGCGCAAAAAGCACAAC 534
*** **** ***** * ** * * * ** ** ** * ** ** *
consensus_6068#1 GACCAGTACCGGTAAGGGAGGGC-AGCAGCAGGCCGGCAC-GCCGCA---GATAGTGGTG 483
consensus_6068#3 GACCAGTACCGGTAAGGGAGGGC-AGCAGCAGGCCGGCAC-GCCGCA----ATAGTGGTG 256
consensus_6068#2 GACCAGTACCGGTAAGGGAGGGC-AGCAGCAGGCCGGCAC-GCCGCA---GATAGTGGTG 541
consensus_6068#0 CGCAAGGGTTCGTACAGCACGACGAAGAATGGGCTGCCGCAGACGTACGGGATGCAGCCG 594
* ** *** * * * * * * *** * * * * ** * ** * *
consensus_6068#1 GGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAA----GGAAAAGGA 539
consensus_6068#3 GGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAG-CAGGAAAAGGA 315
consensus_6068#2 GGCACGATAGAGCTGAACAATTT------------------------------------- 564
consensus_6068#0 CGCAAGAACGAATCGTGGACGCTTGGCGGCGCGATGAATCATAGCAAAATTATAAATGCA 654
*** ** ** * * *
consensus_6068#1 GATCGGCACG--AGCAACCAGTTCGAGACGCTCACCCTGATCGACGAGGACGACG-AGGA 596
consensus_6068#3 GATCGGCACGG-AGCAACCAGTTCGAGACGCTCACCCTGATCGACGAAGACGACGGAGGA 374
consensus_6068#2 ------------------------------------------------------------
consensus_6068#0 GATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGA-CGACGGCGGCCACT-GGCA 712
consensus_6068#1 GGAACAGGATCGGAACTGCTCGAACGCACATTCCTCCT------ 634
consensus_6068#3 GGAACAGGATCGGAACTGCTCGAACGCACACTCCTCCTCGTCAT 418
consensus_6068#2 --------------------------------------------
consensus_6068#0 GCGCGATGGCCGCGATGGTCAAAGCCAACG-------------- 742
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||