These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1079 fasta sequence [CCGAAGACAAACTTTCAAAGAAACGGCACGAAGTGAGAGGCAATTTGCTCTAAAAAATTGAAGTAACAGAAAAACGCAGATTGACGCTTTAATCGTGTGCCGTGAAATTATGCTCACGCGCCCCTCATCATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGGAAAACAGTTCGTCGACAGCGCAG-AAGCAACCGGGCGAGGAGCAGTCGTGGGTCGTCGTGGGCCACGCGCAAGCAATGTTCACCGCCAACAACATCCAAACGGCAACGGGCACCCCAATCGGCATCCAGTATCAGACCGCGACCGCCACCGACATCAACAAGGGTACCAAGCTGGAGGGCCAAAAGACGAACCAGCAGGCGCCGGAGTTTTCGACGTTCTACGCTAATGTGAATATGATACAAAAGCTAACGCCAACGTCCCAGGCGTTGAGCACCGTTAATCTGGCGCAGCTGTCCGATGACTCCAAAACGGTACAGTACCTGCAGCCGTTCGGGTACGCCAACTGTGCCCTGGTCAACCAGATGCCGATCCCGAACGGCGTCACCGGGATCACGGTCGATGGCAGGCAGCTGGTCGTGAACAAACCCATCACGAACACCATATCCAACATCAGCTTCAAGTGCGATGTGTGCGGTTTGATGTTCAACCATCTCACCCTGCTGAACCATCACAAGCGCACCCACAACCAGGATGGGGAAACGACATCGGATGCCATTACGATTCAGATTGTCGCCACGGAAGCGCTCGACCCGGCACCGCAGCAGCAGCAGCTGCAGCACGCCCAGGAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAACAGCAAGCCCAAGCGCAAGCTCAAGCTCAAGCGCAACAGCAAGCGCAACAGCAAGCGCACAGGCAAGCGCAACAGCAAGCGCAGAGGCAGCAACAGCAACAGCAACAGGTGACAACACACACCACCAAGGCGGACAAATCGCAGAAGTGCATCTCGTGCAAGGGGCCCATCCACAGCAACCCGAAGCGAAAGGGCCCGAAGCTGATCCGGTGCGAAACCTGCATCAGCAACGATGGC] [+] EMBL BM640951 [CCGAAGACAAACTTTCAAAGAAACGGCACGAAGTGAGAGGCAATTTGCTCTAAAAAATTGAAGTAACAGAAAAACGCAGATTGACGCTTTAATCGTGTGCCGTGAAATTATGCTCACGCGCCCCTCATCATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGGAAAACAGTTCGTCGACAGCGCAGCAAGCAACCGGGCGAGGAGCAGTCGTGGGTCGTCGTGGGCCACGCGCAAGCAATGTTCACCGCCAACAACATCCAAACGGCAACGGGCACCCCAATCGGCATCCAGTATCAGACCGCGACCGCCACCGACATCAACAAGGGTACCAAGCTGGAGGGCCAAAAGACGAACCAGCAGGCGCCGGAGTTTTCGACGTTCTACGCTAATGTGAATATGATACAAAAGCTAACGCCAACGTCCCAGGCGTTGAGCACCGTTAATCTGGCGCAGCTGTCCGATGACTCCAAAACGGTACAGTACCTGCAGCCGTTCGGGTACGCCAACTGTGCCCTGGTCAACCAGATGCCGATCCCGAACGGCGTCACCGGGATCACGGTCGATGGCAGGCAGCTGGTCGTGAACAAACCCATCACGAACACCATATCCAACATCAGCTTCAAGTGCGATGTGTGC ] [+] EMBL CNS08SU5 [ CATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGGAAAACAGTTCGTCGACAGCGCAG AAGCAACCGGGCGAGGAGCAGTCGTGGGTCGTCGTGGGCCACGCGCAAGCAATGTTCACCGCCAACAACATCCAAACGGCAACGGGCACCCCAATCGGCATCCAGTATCAGACCGCGACCGCCACCGACATCAACAAGGGTACCAAGCTGGAGGGCCAAAAGACGAACCAGCAGGCGCCGGAGTTTTCGACGTTCTACGCTAATGTGAATATGATACAAAAGCTAACGCCAACGTCCCAGGCGTTGAGCACCGTTAATCTGGCGCA CTGTCCGATGACTCCAAAACGGTACAGTACCTGCAGCCGTTCGGGTACGCCAACTGTGCCCTGGTCAACCAGATGCCGATCCCGAACGGCGTCACCGGGATCACGGTCGATGGCAGGCAGCTGGTCGTGAACAAACCCATCACGAACACCATATCCAACATCAGCTTCAAGTGCGATGTGTGCGGTTTGATGTTCAACCATCTCACCCTGCTGAACCATCACAAGCGCACCCACAACCAGGATGGGGAAACGACATCGGATGCCATTACGATTCAGATTGTCGCCACGGAAGCGCTCGACCCGGCACCGCAGCAGCAGCAGCTGCAGCACGCCCAGGAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAACAGCAAGCCCAAGCGCAAGCTCAAGCTCAAGCGCAACAGCAAGCGCAACAGCAAGCGCACAGGCAAGCGCAACAGCAAGCGCAGAGGCAGCAACAGCAACAGCAACAGGTGACAACACACACCACCAAGGCGGACAAATCGCAGAAGTGCATCTCGTGCAAGGGGCCCATCCACAGCAACCCGAAGCGAAAGGGCCCGAAGCTGATCCGGTGCGAAACCTGCATCAGCAACGATGGC] [+] EMBL CNS08W9W [ CATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGGAAAACAGTTCGTCGACAGCGC C AAGCAACCGGGCGAGGAGCAGTCGTGGGTCGTCGTGGGCCACGCGCAA CAATGTTCACCGCCAACAACATCCAAACGGCAACGGGCACCCCAATCGGCATCCAGTATCAGACCGCGACCGCCACCGACATCAACAAGGGTACCAAGCTGGAGGGCCAAAAGACGAACCAGCAGGCGCCGGAGTTTTCGACGTTCTACGCTAATGTGAATATGATACAAAAGCTAACGCCAACGTCCCAG ] consensusID : consensus_6077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGCTCATGTGTGCTGGTCGTGTAGTGCGCGTCCTGCTTGCTTCTTTGCATACCGTTCGGAACAGTTGCGAACCACTGCGCCGCCATATTAAAGTGAGACAAAAGAACCGTGTGCCACACCGCTTGTCTGTTGTGTGTGCGGTGTTGTGCTGTGTGTTTTGGGATTTTCTACGTGAAACGGACACAATTTCCGGACCCGCCGGAGGACGACGCCGCGCGTACATTTCTGTGTGTGTGATTTGTCTTGGCGGTGGCGGACACACGGACGCCCAACATTCGGCCAAGCCACGGGGGCAGAGTAACAGAAAAAAAGACGCTTTAATCGTGTGCCGTGAAATTATGCTCACGCGCCCCTCATCATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGGAAAACAGTTCGTCGACAGCGCAGCAAGCAACCGGGCGAGGAGCAGTCGTGGGTCGTCGTGGGCCACGCGCAAGCAATGTTCACCGCCAACAACATCCAAACGGCAACGGGCACCCCAATCGGCATCCAGTATCAGACCGCGACCGCCACCGACATCAACAAGGGTACCAAGCTGGAGGGCCAAAAGACGAACCAGCAGGCGCCGGAGTTTTCGACGTTCTACGCTAATGCGTTGAGCACCGTTAATCTG] [+] EMBL BM617249 [CCGCTCATGTGTGCTGGTCGTGTAGTGCGCGTCCTGCTTGCTTCTTTGCATACCGTTCGGAACAGTTGCGAACCACTGCGCCGCCATATTAAAGTGAGACAAAAGAACCGTGTGCCACACCGCTTGTCTGTTGTGTGTGCGGTGTTGTGCTGTGTGTTTTGGGATTTTCTACGTGAAACGGACACAATTTCCGGACCCGCCGGAGGACGACGCCGCGCGTACATTTCTGTGTGTGTGATTTGTCTTGGCGGTGGCGGACACACGGACGCCCAACATTCGGCCAAGCCACGGGGGCAGAGTAACAGAAAAAAAGACGCTTTAATCGTGTGCCGTGAAATTATGCTCACGCGCCCCTCATCATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGGAAAACAGTTCGTCGACAGCGCAGCAAGCAACCGGGCGAGGAGCAGTCGTGGGTCGTCGTGGGCCACGCGCAAGCAATGTTCACCGCCAACAACATCCAAACGGCAACGGGCACCCCAATCGGCATCCAGTATCAGACCGCGACCGCCACCGACATCAACAAGGGTACCAAGCTGGAGGGCCAAAAGACGAACCAGCAGGCGCCGGAGTTTTCGACGTTCTACGCTAATGCGTTGAGCACCGTTAATCTG] consensusID : consensus_6077#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGCATCATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGGAAAACAGTTCGTCGACAGCGCAGCAAGCAACCGGGCGAGGAGCAGTCGTGGGTCGTCGTGGGCCACGCGCAAGCAATGTTCACCGCCAACAACATCCAAACGGCGTCACCGGGATCACGGTCGATGGCAGGCAGCTGGTCGTGAACAAACCCATCACGAACACCATATCCAACATCAGCTTCAAGTGCGATGTGTGCGGTTTGATGTTCAACCATCTCACCCTGCTGAACCATCACAAGCGCACCCACAACCAGGATGGGGAAACGACATCGGATGCCATTACGGTAGTAACGCAAGCGCAGAATTTAGTCCAGGCACAAAATCTCATCTCAGAAACGGGTCAAAACCTTGGTCAGATTCAGATTGTCGCCACGGAAGCGCTCGACCCGGCACCGCAGCAGCAGCAGCTGCAGCACGCCCAGGAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAACAGCAAGCCCAAGCGCAAGCTCAAGCTCAAGCGCAACAGCAAGCGCAACAGCAAGCGCAGCAGCAAGCGCAACAGCAAGCGCAGCAGCAGCAACAGCAACAGCA] [+] EMBL BM575182 [CCGCATCATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGGAAAACAGTTCGTCGACAGCGCAGCAAGCAACCGGGCGAGGAGCAGTCGTGGGTCGTCGTGGGCCACGCGCAAGCAATGTTCACCGCCAACAACATCCAAACGGCGTCACCGGGATCACGGTCGATGGCAGGCAGCTGGTCGTGAACAAACCCATCACGAACACCATATCCAACATCAGCTTCAAGTGCGATGTGTGCGGTTTGATGTTCAACCATCTCACCCTGCTGAACCATCACAAGCGCACCCACAACCAGGATGGGGAAACGACATCGGATGCCATTACGGTAGTAACGCAAGCGCAGAATTTAGTCCAGGCACAAAATCTCATCTCAGAAACGGGTCAAAACCTTGGTCAGATTCAGATTGTCGCCACGGAAGCGCTCGACCCGGCACCGCAGCAGCAGCAGCTGCAGCACGCCCAGGAGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAACAGCAAGCCCAAGCGCAAGCTCAAGCTCAAGCGCAACAGCAAGCGCAACAGCAAGCGCAGCAGCAAGCGCAACAGCAAGCGCAGCAGCAGCAACAGCAACAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6077#0 CCGAAGACAAACTTTCAAAGAAACGGCACGAAGTGAGAGGCAATTTGCTCTAAAAAATTG 60 consensus_6077#2 ------------------------------------------------------------ consensus_6077#1 ------------------------------------------------------------ consensus_6077#0 AAGTAACAGAAAAACGCAGATTGACGCTTTAATCGTGTGCCGTGAAATTATGCTCACGCG 120 consensus_6077#2 ------------------------------------------------------------ consensus_6077#1 ------------------------------------------------------------ consensus_6077#0 CCCCTCATCATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGG 180 consensus_6077#2 --CCGCATCATCATCATCGTCATCCCTAGCAGCAGTATTTGAAAACAGCCGCCTGTGAGG 58 consensus_6077#1 ------------------------------------------------CCGCTCATGTGT 12 **** ** * consensus_6077#0 AAAACAGTTCGTCGACAGCGCAG-AAGCAACCGGGCGAGGA-GCAGTCGTGGGTCGTCGT 238 consensus_6077#2 AAAACAGTTCGTCGACAGCGCAGCAAGCAACCGGGCGAGGA-GCAGTCGTGGGTCGTCGT 117 consensus_6077#1 G---CTGGTCGTGTAGTGCGCGTCCTGCTTGCTTCTTTGCATACCGTTCGGAACAGTTGC 69 * * **** * **** ** * * * * ** * ** * consensus_6077#0 GGGCCAC-GCGCAAGCAATGTTCACCGCCAACAACATCCAAACGGCAACGGGCACCCCAA 297 consensus_6077#2 GGGCCAC-GCGCAAGCAATGTTCACCGCCAACAACATCCAAACGGCGTC----------- 165 consensus_6077#1 GAACCACTGCGCC-GCCATATTAAAGTGAGACAAAA---GAACCGTGT------------ 113 * **** **** ** ** ** * **** * *** * consensus_6077#0 TCGGCATCCAGTATCAGACCGCGACCGCCACCGACATCAACAAGGGTACCAAGCTGGAGG 357 consensus_6077#2 -----------------ACCGGGATCACGGTCGATGGCA-----GGCAGCTGGTCG---- 199 consensus_6077#1 -----------------GCCACACCGCTTGTCTGTTGTGTGTGCGGTGTTGTGCTGTGTG 156 ** * ** * * consensus_6077#0 GCCAAAAGACGAACCAGCAGGCGCCGGAGTTTTCGACGTTCTACGCTAATGTGAATATGA 417 consensus_6077#2 ---------TGAACAAAC---------------------------CCATCACGAACACCA 223 consensus_6077#1 TTTT-----GGGATTTTCTAC------------------------GTGAAACGGACACAA 187 * * * * * * * consensus_6077#0 TACAAAAGCTAACGCCAACGTCCCAGGCGTTGAGCACCGTTAATCTGGCGCAGCTGTCCG 477 consensus_6077#2 TAT-----CCAACATCAGCTTCAAGTGCGATGTGTGCGGTTT----------GATGTTCA 268 consensus_6077#1 TTTCCGGACC--CGCCGGAGGACGACGCCGCGCGTACATTTC--------TGTGTGTGTG 237 * * * * ** * * * ** *** consensus_6077#0 ATG-ACTCCAAAACGGTACAGTACCTGCAGCCGTTCGGGTACGCCAACTGTGCCCTGGTC 536 consensus_6077#2 ACC-ATCTCA------------------------------------------CCCTGCTG 285 consensus_6077#1 ATTTGTCTTG-----------------------------------------GCGGTGGCG 256 * * ** consensus_6077#0 AACCAGATGCCGATCCCGAACGGCGTCACCGGGATCACGGTCGATGGCAGGCAGCTGGTC 596 consensus_6077#2 AACCA--------TCACAAGCG----CACC-----CACAACCA---------GGATGG-- 317 consensus_6077#1 GACA----------CACGGACGCC--CAACA----TTCGGCCA---------AGCCAC-- 289 ** * * ** ** * * * * consensus_6077#0 GTGAACAAACCCATCACGAACACCATATCCAACATCAGCTTCAAGTGCGATGTGTGCGGT 656 consensus_6077#2 GGAAACGA---CATC--GGATGCCAT-TACGGTAGTAACG-CAAGCGCAGAATTTA---- 366 consensus_6077#1 GGGGGCAGAGTAACA--GAAAAAAAGACGCTTTAATCGTG--TGCCGTGAAATTAT---- 341 * * * * * * * * * * consensus_6077#0 TTGATGTTCAACCATCTCACCCTGCTGAACCATCACAAGC-GCACCCACAACCAGGATGG 715 consensus_6077#2 -----GTCCAGGCA-------------------CAAAATC-TCATCT-----CAGAAACG 396 consensus_6077#1 -----GCTCACGCGCCCCTC--------ATCATCATCATCGTCATCC-CTAGCAGCAGTA 387 * ** * ** * * ** * *** * consensus_6077#0 GGAAACGACATCGGATGCCATTACGATTCAGATTGTCGCCACGGAAGCGCTCGACCCGGC 775 consensus_6077#2 GGTCAAAACCTTGGTCA-------GATTCAGATTGTCGCCACGGAAGCGCTCGACCCGGC 449 consensus_6077#1 TTTGAAAACAGCCGCCTGTGAGG-AAAACAGTTCGTCGACAGCGCAGCAAGCAACCGGGC 446 * ** * * *** * **** ** * *** * *** *** consensus_6077#0 ACCGCAGCAGCAGCAGCT-GCAGCACGCCCAGGAGCAGCAACAG-CAGCAGCAGCAACAA 833 consensus_6077#2 ACCGCAGCAGCAGCAGCT-GCAGCACGCCCAGGAGCAGCAACAG-CAGCAGCAGCAACAG 507 consensus_6077#1 GAGG-AGCAGTCGTGGGTCGTCGTGGGCCACGCGCAAGCAATGTTCACCGCCAACAACAT 505 * ***** * * * * * *** * ***** ** * ** ***** consensus_6077#0 C--AGCAGCAACAGCAAGCCCAAGCGCAAGCTCAAGCTCAAGCGCAACAGCAAGCG-CAA 890 consensus_6077#2 C--AGCAGCAACAGCAAGCCCAAGCGCAAGCTCAAGCTCAAGCGCAACAGCAAGCG-CAA 564 consensus_6077#1 CCAAACGGCAACGGGCACCCCAATCGGCATCCAGTATCAGACCGCGACCGCCACCGACAT 565 * * * ***** * * ***** ** * * * *** ** ** * ** ** consensus_6077#0 CAGCAAGCGCACAG-GCAAGCGCAACAGCAAGCGCAGAGGCAGCAACAGCAACAGCAACA 949 consensus_6077#2 CAGCAAGCGCAGCA-GCAAGCGCAACAGCAAGCGCAGCAGCAGCAACAGCAACAGCA--- 620 consensus_6077#1 CAACAAGGGTACCAAGCTGGAGGGCCAAAAGACGAACCAGCAGGCGCCGGAGTTTTCGAC 625 ** **** * * ** * * ** * ** * **** * * * consensus_6077#0 GGTGACAACACACACCACCAAGGCGGACAAATCGCAGAAGTGCATCTCGTGCAAGGGGCC 1009 consensus_6077#2 ------------------------------------------------------------ consensus_6077#1 GTTCTACGCTAATGCGTTGAGCACCGTTAATCTG-------------------------- 659 consensus_6077#0 CATCCACAGCAACCCGAAGCGAAAGGGCCCGAAGCTGATCCGGTGCGAAACCTGCATCAG 1069 consensus_6077#2 ------------------------------------------------------------ consensus_6077#1 ------------------------------------------------------------ consensus_6077#0 CAACGATGGC 1079 consensus_6077#2 ---------- consensus_6077#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||