These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1240 fasta sequence [CCGCGATCGCCTCGCAGGGATTGCTAAACGTTTGCCGATTCTGTTTGTCCCAGGAAGATGAACGAATCATTCTGCTCGATGAGATCCTGGACGCGTCGCTCTCAATCGAAAATGTGCAACAGTTAACAGGAATTGAAATATGTACGGATCAAACAACGACGCAGGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCTTTCCGGAACAACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCACTAGATTTTGAGATCACTGATAATACGATAAACGATGGTTTCTCGGCTACTGATGATGAAACGGACTTCGAACAGGATGATGATGATGAGCCAAATCGAACGCGAACGAAACGAAATACAGACTCCACCAACGATGATACAATGGAGTACAGGGAAGAGGTCATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTC-GGAAACCAGTCCGCCTAAACGCCATGAAGACGAACCAACGGTAGCAACGATGCAGCAGTCGACGGAACAAGACGATACGCTCTACTGTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATGGCGAGGAAGCCGTATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACCGCGCAACACACAGCAAAGAGATGGGCCACGCTTGTCCTCACTGTTCGATACGGATGAGCAATTCATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCGAAATCTGTGACATTGGATTCACCCATTACTCTACCTACCGGTCGCACATGTACGCACAGCACGGAATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGGACGCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTGTCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCACCAGCTAGTCCATTCTAAAGAGCAGCC] [+] EMBL BM576939 [CCGCGATCGCCTCGCAGGGATTGCTAAACGTTTGCCGATTCTGTTTGTCCCAGGAAGATGAACGAATCATTCTGCTCGATGAGATCCTGGACGCGTCGCTCTCAATCGAAAATGTGCAACAGTTAACAGGAATTGAAATATGTACGGATCAAACAACGACGCAGGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCTTTCCGGAACAACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCACTAGATTTTGAGATCACTGATAATACGATAAACGATGGTTTCTCGGCTACTGATGATGAAACGGACTTCGAACAGGATGATGATGATGAGCCAAATCGAACGCGAACGAAACGAAATACAGACTCCACCAACGATGATACAATGGAGTACAGGGAAGAGGTCATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTC GGAAACCAGTCCGCCTAAACGCCATGAAGACGAACCAACGGTAGCAACGATGCAGCAGTCGACGGAACAAGACGATACGCTCTACTGTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATGGCGAGGAAGCCGT ] [+] EMBL AL693481 [ CGAAACGAAATACAGACTCCAC ACGATGATACAATGGAGTACAGGGAAGAGGTCATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTCGGGAAACCAGTCCGCCTAAACGCCATGAAGACGA GGT AACGATGCAGCAATCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCACCCACTGATGGCGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGA ] [+] EMBL BX609792 [ CACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACCGCGCAACACACAGCAAAGAGATGGGCCACGCTTGTCCTCACTGTTCGATACGGATGAGCAATTCATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCGAAATCTGTGACATTGGATTCACCCATTACTCTACCTACCGGTCGCACATGTACGCACAGCACGGAATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGGACGCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTGTCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCACCAGCTAGTCCATTCTAAAGAGCAGCC] consensusID : consensus_6083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCCCACGCGTCCGAAACAACGACGCAGGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCATTCCGGAACAACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCATTAGATTTTGAGATCACTGATAATACGATAAACGATGGTTTCTCGCCTTCTGACGATGAAACGGACTTCGAACAGGATGATGACGATGATGAGCCAAATCGAACGGGAACGAAACGGAATACAAGCTCCACAAACGATGATACAATGGAGTACAGGGAAGAGGACATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTCGGAAACCAGTCCGCCTAAAGGCCATGAAGACGAATCAACAGTAGCAACGATGCAGCATTCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATGGGGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAAGCTCGTGTTAGTGCGGAGCGGACAAGCTGGTGGCAATAGTCGCGCTGCCACCTCGACGAGCATTCTA] [+] EMBL BM644352 [CCGCCCACGCGTCCGAAACAACGACGCAGGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCATTCCGGAACAACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCATTAGATTTTGAGATCACTGATAATACGATAAACGATGGTTTCTCGCCTTCTGACGATGAAACGGACTTCGAACAGGATGATGACGATGATGAGCCAAATCGAACGGGAACGAAACGGAATACAAGCTCCACAAACGATGATACAATGGAGTACAGGGAAGAGGACATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTCGGAAACCAGTCCGCCTAAAGGCCATGAAGACGAATCAACAGTAGCAACGATGCAGCATTCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATGGGGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAAGCTCGTGTTAGTGCGGAGCGGACAAGCTGGTGGCAATAGTCGCGCTGCCACCTCGACGAGCATTCTA] consensusID : consensus_6083#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CCGCCCACGCGTCCGAATCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCACCCACTGATGGCGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACCGCGCAACACACAGCAAAGAGATGGGCCACGCTTGTCCGCACTGTTCGATACGGATGAGCAATTCATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCGAAATCTGTGACATTGGATTCACCCATTACTCTACCTACCGGTCGCACATGTACGCACAGCACGGAATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGGACGCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTGTCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCAC] [+] EMBL BM656526 [CCGCCCACGCGTCCGAATCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTACATAGAGCTGGGTGAACCACCCACTGATGGCGAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAGGCTCGTGTTAGTGCGGAGCGGACAAGCTGGCGGTAATACTCGCGCTGCCACCTCGACGAGCATTCTATTTCGCCGCACCAAGCGCAAGCGTCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACCGCGCAACACACAGCAAAGAGATGGGCCACGCTTGTCCGCACTGTTCGATACGGATGAGCAATTCATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCGAAATCTGTGACATTGGATTCACCCATTACTCTACCTACCGGTCGCACATGTACGCACAGCACGGAATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGGACGCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTGTCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6083#0 CCGCGATCGCCTCGCAGGGATTGCTAAACGTTTGCCGATTCTGTTTGTCCCAGGAAGATG 60 consensus_6083#2 ------------------------------------------------------------ consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 AACGAATCATTCTGCTCGATGAGATCCTGGACGCGTCGCTCTCAATCGAAAATGTGCAAC 120 consensus_6083#2 ------------------------------------------------------------ consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 AGTTAACAGGAATTGAAATATGTACGGATCAAACAACGACGCAGGCGGTATGCTTGGAGT 180 consensus_6083#2 ------------------------------------------------------------ consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 GCACCAGCAAGCTTAAAAAGGCTTCGGCTTTCCGGAACAACTGCATCAGCAACGACTACC 240 consensus_6083#2 ------------------------------------------------------------ consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 TGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCGTCCAAGGTGCTACTGATGATG 300 consensus_6083#2 ------------------------------------------------------------ consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 TCCAAAACGATGATTCTGTCCTGGAGGATCCACTAGATTTTGAGATCACTGATAATACGA 360 consensus_6083#2 ------------------------------------------------------------ consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 TAAACGATGGTTTCTCGGCTACTGATGATGAAACGGACTTCGAACAGGATGATGATGATG 420 consensus_6083#2 ------------------------------------------------------------ consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 AGCCAAATCGAACGCGAACGAAACGAAATACAGACTCCACCAACGATGATACAATGGAGT 480 consensus_6083#2 ------------------------------------------------------------ consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 ACAGGGAAGAGGTCATCGCTTCCGTTGATTATGATGACGGCACAGCTATCTCGGAAACCA 540 consensus_6083#2 ------------------------------------------------------------ consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 GTCCGCCTAAACGCCATGAAGACGAACCAACGGTAGCAACGATGCAGC--AGTCGACGGA 598 consensus_6083#2 -----------------------------------CCGCCCACGCGTCCGAATCGACGGA 25 consensus_6083#1 -----------------------------------CCGCCCACGCGTCCGAAACAACGAC 25 * * * ** * * * *** consensus_6083#0 ACAAGACGATACGCTCT-ACTGTGCCAACTACATAGAGCTGGGTGAACCGCCCACTGATG 657 consensus_6083#2 ACAAGACGATCCGCTCT-ACTCTGCCAACTACATAGAGCTGGGTGAACCACCCACTGATG 84 consensus_6083#1 GCA-GGCGGTATGCTTGGAGTGCACCAGCAAGCTTAAAAAGGCTTCGGCATTCCGGAACA 84 ** * ** * *** * * *** * * * * ** * * * * consensus_6083#0 GC-GAGGAAGCCGTATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACG--CA 714 consensus_6083#2 GC-GAGGAAGCTGCATTAAGTAAGAATGATAATCTTACCTGCTGGACTGGTTCACG--CA 141 consensus_6083#1 ACTGCATCAGCAACGACTACCTGTTCCGGCAGCTCTGCTCACGGTCGCGTTTCACCGTCG 144 * * *** * * * * * * * * ***** * consensus_6083#0 CCAGACGAGCCAG-GCTCGTGTT-AGTGCGGAGCGGACAAGCTGGCGGTAATACTCG--- 769 consensus_6083#2 CCAGACGAGCCAG-GCTCGTGTT-AGTGCGGAGCGGACAAGCTGGCGGTAATACTCG--- 196 consensus_6083#1 TCCAAGGTGCTACTGATGATGTCCAAAACGATGATTCTGTCCTGGAGGATCCATTAGATT 204 * * * ** * * * *** * ** * **** ** * * * consensus_6083#0 -------CGCTGCCACCTCGACGAGC-ATTCTATTTCGCCGCACCAAGCGCAAGCG---- 817 consensus_6083#2 -------CGCTGCCACCTCGACGAGC-ATTCTATTTCGCCGCACCAAGCGCAAGCG---- 244 consensus_6083#1 TTGAGATCACTGATAATACGATAAACGATGGTTTCTCGCCTTCTGACGATGAAACGGACT 264 * *** * *** * * ** * * ***** * * ** ** consensus_6083#0 TCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACC-GCG 876 consensus_6083#2 TCAGAAGCCACTCTGCGAAACGTGCGGTAAGGTGGTGACAAACATTGCAACGCACC-GCG 303 consensus_6083#1 TCGAACAGGATGATGACGATGATGAGCCAAATCGAACGGGAACGAAACGGAATACAAGCT 324 ** * * ** * ** * ** * *** * ** ** consensus_6083#0 CAACACACAGCAAAGAGATGGGCCACGCTTGTCCTCACTGTTCGATACGGATGAGCAATT 936 consensus_6083#2 CAACACACAGCAAAGAGATGGGCCACGCTTGTCCGCACTGTTCGATACGGATGAGCAATT 363 consensus_6083#1 CCACAAACGATGATACAATGGAGTACAGGGAAGAGGAC--ATCGCTTCCGTTGATTATGA 382 * *** ** * **** ** ** *** * * * *** * consensus_6083#0 CATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCG 996 consensus_6083#2 CATCGAATCTGCTGCGCCACGTACAAGCCGTCCACCTGAAGGTGAACATAAAGACGTGCG 423 consensus_6083#1 TGACGGCACAGCTATCTCGGAAACCAG---TCCGCCTAAAGGC---CATGAAGACGAATC 436 ** * *** * ** ** *** *** **** *** ****** consensus_6083#0 AA----ATCTGTGACATTGGATTCACC----CATTACTCTACCTACCGGTCGCACATGTA 1048 consensus_6083#2 AA----ATCTGTGACATTGGATTCACC----CATTACTCTACCTACCGGTCGCACATGTA 475 consensus_6083#1 AACAGTAGCAACGATGCAGCATTCGACGGAACAAGACGATCCGCTCTACTCTGCCAACTA 496 ** * * ** * **** * ** ** * * * ** ** ** consensus_6083#0 CGCACAGCACGG-AATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGG 1107 consensus_6083#2 CGCACAGCACGG-AATCGGTGAGCTGCACGAGTGCCGGGTGTGCTCAAGAACGTTCCCGG 534 consensus_6083#1 CATAGAGCTGGGTGAACCGCCCACTGATGGGGAGGAAGCTGCATTAAGTAAGAATGATAA 556 * * *** ** * * * *** * * * * ** * * ** * consensus_6083#0 AC--GCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTG 1165 consensus_6083#2 AC--GCCTGTGTGCTGCGAAAGCACGTGAAACGGTTTCATGGTGTGCAGGAGCACGCCTG 592 consensus_6083#1 TCTTACCTGCTGGACTGGTTCACGCACCAGACGAGCCAAGCTCGTGTTAGTGCGGAGCGG 616 * **** * * * * * *** * *** * ** * * consensus_6083#0 TCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCACCAGCTAGTCCA 1225 consensus_6083#2 TCCCATCTGTGGCAAACTATTCAAGATGCTCGACATGCTCAAGCGTCAC----------- 641 consensus_6083#1 ACAAGCTGGTGGCAA--TAGTCGCGCTGCC--ACCTCGACGAGCATTCTA---------- 662 * ******* ** ** * *** ** * * *** * consensus_6083#0 TTCTAAAGAGCAGCC 1240 consensus_6083#2 --------------- consensus_6083#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||