These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [GGCAAGAATCCGCGCACGATGGGAAACGCACGCATTGCCGGGGCTCCAGCATTGAATAAGTGCTCTATTTTTTGGGTTTAGTTTTTTGGCACCATGGAACGAGAAACGTTAGAAAGCACTGTGTACGAGATAACGAGAGGGGCGAAAACTTGGCACAAAGCAGTCAAACAACGAACCAACAATGAACGGACGACATCCTCCCCCCCGGTGAAATGTACAAAGGAACAAAGTAACAGCAACAGTCGCAGACCAACGAACGGCTACTACGGGTGCCGGGTGCGAGCAAATAATAATCTGGTCTACCGGGAGAGCAGAAGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCCTGGAAACATTGGAGCAAATGGGCAAAAGAGAAGCAAATTGGGAGGATTGGGGGAANAGGAGAAAAAACTTTCCTTTTAATAGGGACAACAGGGAAGGATCATTTTCTC] [+] EMBL BX467845 [GGCAAGAATCCGCGCACGATGGGAAACGCACGCATTGCCGGGGCTCCAGCATTGAATAAGTGCTCTATTTTTTGGGTTTAGTTTTTTGGCACCATGGAACGAGAAACGTTAGAAAGCACTGTGTACGAGATAACGAGAGGGGCGAAAACTTGGCACAAAGCAGTCAAACAACGAACCAACAATGAACGGACGACATCCTCCCCCCCGGTGAAATGTACAAAGGAACAAAGTAACAGCAACAGTCGCAGACCAACGAACGGCTACTACGGGTGCCGGGTGCGAGCAAATAATAATCTGGTCTACCGGGAGAGCAGAAGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCCTGGAAACATTGGAGCAAATGGGCAAAAGAGAAGCAAATTGGGAGGATTGGGGGAANAGGAGAAAAAACTTTCCTTTTAATAGGGACAACAGGGAAGGATCATTTTCTC] consensusID : consensus_6086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 742 fasta sequence [AGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCA-GTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTTTGTACCAACACCAATCGGTACACGTATATGGCGTCTCCCACGCGTCCGCGG] [-] EMBL BX625373 [AGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCATGT TGCGGCCGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACCTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAGCAGAAGCGGCAAAAAGG ] [-] EMBL BM615258 [ ACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCA GTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAACCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTTTGTACCAACACCAATCGG ] [-] EMBL BM648520 [ GCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACACACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCA GTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTGTGTACCAACACCAATCGATACACGTATATGGCGTCTCCCACGCGTCCGCGG] consensusID : consensus_6086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [TTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACACACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTGTGTACCAACACCAATCGATACACGTATATGGCGTCTCCCCGAGGGTAAGGGGTGAGATTTTGCGG] [-] EMBL BM653279 [TTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACACACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTGTGTACCAACACCAATCGATACACGTATATGGCGTCTCCCCGAGGGTAAGGGGTGAGATTTTGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6086#1 ------------------------------------------------------------ consensus_6086#2 ------------------------------------------------------------ consensus_6086#0 GGCAAGAATCCGCGCACGATGGGAAACGCACGCATTGCCGGGGCTCCAGCATTGAATAAG 60 consensus_6086#1 ------------------------------------------------------------ consensus_6086#2 ------------------------------------------------------------ consensus_6086#0 TGCTCTATTTTTTGGGTTTAGTTTTTTGGCACCATGGAACGAGAAACGTTAGAAAGCACT 120 consensus_6086#1 ------------------------------------------------------------ consensus_6086#2 ------------------------------------------------------------ consensus_6086#0 GTGTACGAGATAACGAGAGGGGCGAAAACTTGGCACAAAGCAGTCAAACAACGAACCAAC 180 consensus_6086#1 ------------------------------------------------------------ consensus_6086#2 ------------------------------------------------------------ consensus_6086#0 AATGAACGGACGACATCCTCCCCCCCGGTGAAATGTACAAAGGAACAAAGTAACAGCAAC 240 consensus_6086#1 ------------------------------------------------------------ consensus_6086#2 ------------------------------------------------------------ consensus_6086#0 AGTCGCAGACCAACGAACGGCTACTACGGGTGCCGGGTGCGAGCAAATAATAATCTGGTC 300 consensus_6086#1 ---------------AGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACC 45 consensus_6086#2 ------------------------------------------------------------ consensus_6086#0 TACCGGGAGAGCAGAAGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACC 360 consensus_6086#1 TTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGT 105 consensus_6086#2 --------------------------------------------TTTCTGCAGCGCCAGT 16 consensus_6086#0 TTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGT 420 **************** consensus_6086#1 ATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGC 165 consensus_6086#2 ATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACACACATGTCCTGCAGC 76 consensus_6086#0 ATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGC 480 ******************************************** *************** consensus_6086#1 ACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAG 225 consensus_6086#2 ACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAG 136 consensus_6086#0 ACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAG 540 ************************************************************ consensus_6086#1 CTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAG 285 consensus_6086#2 CTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAG 196 consensus_6086#0 CTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAG 600 ************************************************************ consensus_6086#1 TAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGC 345 consensus_6086#2 TAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGC 256 consensus_6086#0 TAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGC 660 ************************************************************ consensus_6086#1 CCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGC 405 consensus_6086#2 CCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGC 316 consensus_6086#0 CCGACAATGCCAAAGCCACGCCCGTACCC-----TGGAAACATTGGAGCAAATGGG---- 711 **************************** * * ** **** *** ** consensus_6086#1 TCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAG 465 consensus_6086#2 TCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAG 376 consensus_6086#0 -CAAAAGAGAAGCAAAT----TGGGAGGATTGGGGGAANAGGAGAAAAAACTTTCCTTTT 766 * * * *** ** *** *** *** * * * ** * * consensus_6086#1 GACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTAC 525 consensus_6086#2 GACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTAC 436 consensus_6086#0 AATAGGGACA---ACAGGGAAGGATCATTTTCTC-------------------------- 797 * * *** **** * * * * consensus_6086#1 GTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAG 585 consensus_6086#2 GTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAG 496 consensus_6086#0 ------------------------------------------------------------ consensus_6086#1 TAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTT 645 consensus_6086#2 TAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTT 556 consensus_6086#0 ------------------------------------------------------------ consensus_6086#1 TTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTTTGTACCAACACCAA 705 consensus_6086#2 TTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTGTGTACCAACACCAA 616 consensus_6086#0 ------------------------------------------------------------ consensus_6086#1 TCGGTACACGTATATGGCGTCTCCC-ACGCGTCCGCGG------------- 742 consensus_6086#2 TCGATACACGTATATGGCGTCTCCCCGAGGGTAAGGGGTGAGATTTTGCGG 667 consensus_6086#0 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||