These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 842 fasta sequence [CCGGTCATTGTCATTTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACACACATACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTTGTCAGTTTTAATGCCAAACCTTCAGCAGTGTAAATGTGAAAAGTGTCCCCGGAAAATCGCTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAATTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATCCACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATACACTCACAAAACTTACACAACACACTTATGAACGCTGGGGGAACAGGTTCCAGGACGACAGGATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAAAAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCACTGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGAAGCTTGGTGGCCGTGGTAGCTTGTATAAAACAAACCCCCCCATGTTTAACACACTCGAACTCGAAGGTGAACACTAATTTAACATATTGATCCACAGCCAACATACATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGCCAAACTAAT] [+] EMBL BM576303 [CCGGTCATTGTCATTTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACACACATACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTTGTCAGTTTTAATGCCAAACCTTCAGCAGTGTAAATGTGAAAAGTGTCCCCGGAAAATCGCTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAATTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATCCACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATACACTCACAAAACTTACACAACACACTTATGAACGCTGGGGGAACAGGTTCCAGGACGACAGGATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAAAAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCACTGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGA ] [+] EMBL BX612599 [ CGCGCAACCGCAGGATGTTGTCAGTTTTAATGCCAAACCTTCAGCAGTGTAAATGTGAAAAGTGTCCCCGGAAAATCGCTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAATTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATCCACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATACACTCACAAAACTTACACAACACACTTATGAACG TGGGGGAACAGGTTCCAGGACGACAGGATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAAAAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCACTGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGAAGCTTGGTGGCCGTGGTAGCTTGTATAAAACAAACCCCCCCATGTTTAACACACTCGAACTCGAAGGTGAACACTAATTT ] [+] EMBL BM653758 [ ccgGTGTAAATGTGAAAAGTGTCCCCGGAAAATCGCTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAATTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATCCACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATACACTCACAAAACTTACACAACACACTTATGAACGCTGGGGGAACAGGTTCCAGGACGACAGGATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAAAAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCACTGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGAAGCTTGGTGGCCGTGGTAGCTTGTATAAAACAAACCCCCCCATGTTTAACACACTCGAACTCGAAGGTGAACACTAATTTAACATATTGATCCACAGCCAACATACATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGCCAAACTAAT] consensusID : consensus_6088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [GATCGCCCGAGGTTATTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACACACACACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTTGTCAGTTTTCATGCCAAACCTTCAGCAGTGTAAACGTGAAAAGTGCCCCCGAAAATCGCTTAAAAAGTTCATCTCCCGAGCAGTTAGGAGTGTTTTCGACGGTAGGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAAATCATAATTATCTTCTTTCGCTAATACCGTCGTTATTACTACTTCACTCACAAACCACGGGGGTGTGTACGCCCTTACCTACAGGCAGGCAGACCTGAGTGCTGTTAATAATACACTCACAAAACTTACATAACACACTTATGAACACTGGGGGAACAGGTCCCAGGACGACAGGATATATCGTATCGGGAAGCACATACAAGAACTGAACAGAAGTAAGGATTGTGCNAGAAAAGCAAAGATAA] [+] EMBL AL693463 [GATCGCCCGAGGTTATTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACACACACACACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGTTGTCAGTTTTCATGCCAAACCTTCAGCAGTGTAAACGTGAAAAGTGCCCCCGAAAATCGCTTAAAAAGTTCATCTCCCGAGCAGTTAGGAGTGTTTTCGACGGTAGGTAAAAGCGGTATGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCCCCATTATTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATTAATAAATCATAATTATCTTCTTTCGCTAATACCGTCGTTATTACTACTTCACTCACAAACCACGGGGGTGTGTACGCCCTTACCTACAGGCAGGCAGACCTGAGTGCTGTTAATAATACACTCACAAAACTTACATAACACACTTATGAACACTGGGGGAACAGGTCCCAGGACGACAGGATATATCGTATCGGGAAGCACATACAAGAACTGAACAGAAGTAAGGATTGTGCNAGAAAAGCAAAGATAA] consensusID : consensus_6088#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [CCGGACGGGAAGAGGCTCAGAAGAGAAGAGAAATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGCCAAACTAATGGTAACATGCGCCGTAACCGCGTTAGGGCAGCGAAGGAATACGCGGATCGTAAAAGGAAAGAAGTGACAACAAACAGCAAACAATACGATCGTATATGTGAGAAAACGGAAATGGAAATATATTTAAAAACCCAAGACAATTTAAAATCC] [+] EMBL BM603265 [CCGGACGGGAAGAGGCTCAGAAGAGAAGAGAAATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGCCAAACTAATGGTAACATGCGCCGTAACCGCGTTAGGGCAGCGAAGGAATACGCGGATCGTAAAAGGAAAGAAGTGACAACAAACAGCAAACAATACGATCGTATATGTGAGAAAACGGAAATGGAAATATATTTAAAAACCCAAGACAATTTAAAATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6088#0 --CCGGTCATTGTCATTTTGGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACAC 58 consensus_6088#1 GATCGCCCGAGGTTATTT-GGTCATGTATTTCAATCTTACCAAAATAATGTCCAACACAC 59 consensus_6088#2 ------------------------------------------------------------ consensus_6088#0 ACACATACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGT 118 consensus_6088#1 ACACACACTTAAAAGTAATTAAAAGAACGTTTCTTCCAACACCGCGCAACCGCAGGATGT 119 consensus_6088#2 --CCGGACGGGAAGAGGCTCAGAAGAGAAGAGA----AATGGAGGGAGACAGTGTAGCAT 54 * ** ** * * **** ** * * ** * * consensus_6088#0 TGTCAGTTTTAATGCCAAACCTTCAGCAGTGTAAATGTGAAAAGTGTCCCCGGAAAATCG 178 consensus_6088#1 TGTCAGTTTTCATGCCAAACCTTCAGCAGTGTAAACGTGAAAAGTGCCCCCG-AAAATCG 178 consensus_6088#2 ACTAAAAACAACCGCCAAACT------AATGGTAACATGCGCCGTAACCGCGTTAGGGCA 108 * * ******* * ** ** ** ** ** ** * * consensus_6088#0 CTTAAAAAGTTCATCTCCCGTGCAGTTAGGAGTGTTTTTGACGGTAG-TAA-AAGCGGTA 236 consensus_6088#1 CTTAAAAAGTTCATCTCCCGAGCAGTTAGGAGTGTTTTCGACGGTAGGTAA-AAGCGGTA 237 consensus_6088#2 GCGAAGGAATACGCGGATCGTAAAAGGAAAGAAGT----GACAACAAACAGCAAACAATA 164 ** * * * ** * * ** *** * * ** * ** consensus_6088#0 TGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCC 296 consensus_6088#1 TGAATTAGTCCGTTGTACATTTCGTACGGAAGCAAAAACGAAAACTCTACCCGCCCGCCC 297 consensus_6088#2 CGA---------TCGTATAT---GTGAGAAAACGGAAATGGAAA-TATATTTAAAAACCC 211 ** * *** ** ** * ** * *** * *** * ** *** consensus_6088#0 CCATTA--TTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATT 354 consensus_6088#1 CCATTA--TTAAGATCTATCGCTATTTGCTACAACACTACATCAAGTATAAGTATATATT 355 consensus_6088#2 AAGACAATTTAAAATCC------------------------------------------- 228 * **** *** consensus_6088#0 AATAA-TTATAATTATCTCCTTTCACTAATACCGTCGTTATTACTACTTCACTCACAATC 413 consensus_6088#1 AATAAATCATAATTATCTTCTTTCGCTAATACCGTCGTTATTACTACTTCACTCACAAAC 415 consensus_6088#2 ------------------------------------------------------------ consensus_6088#0 CACGGGGGTGTGTACGCCCTTACCTACCGGCAGGCACACCTTGAGTGCTGTTAATAATAC 473 consensus_6088#1 CACGGGGGTGTGTACGCCCTTACCTACAGGCAGGCAGACCT-GAGTGCTGTTAATAATAC 474 consensus_6088#2 ------------------------------------------------------------ consensus_6088#0 ACTCACAAAACTTACACAACACACTTATGAACGCTGGGGGAACAGGTTCCAGGACGACAG 533 consensus_6088#1 ACTCACAAAACTTACATAACACACTTATGAACACTGGGGGAACAGGTCCCAGGACGACAG 534 consensus_6088#2 ------------------------------------------------------------ consensus_6088#0 GATACATCGTATCGGAAAGCACATACAAGAACTGAACAGAAGTAAGGATTTGTGCAAGAA 593 consensus_6088#1 GATATATCGTATCGGGAAGCACATACAAGAACTGAACAGAAGTAAGGATT-GTGCNAGAA 593 consensus_6088#2 ------------------------------------------------------------ consensus_6088#0 AAGCAAAGAGAATAGTGAAAACTAGGAGACAAAACACCTTGTGCAAGGAATTGTACTCAC 653 consensus_6088#1 AAGCAAAGATAA------------------------------------------------ 605 consensus_6088#2 ------------------------------------------------------------ consensus_6088#0 TGGCAGGAATTAAAGGCGAACGAACAGAGTAACAGGAAGCTTGGTGGCCGTGGTAGCTTG 713 consensus_6088#1 ------------------------------------------------------------ consensus_6088#2 ------------------------------------------------------------ consensus_6088#0 TATAAAACAAACCCCCCCATGTTTAACACACTCGAACTCGAAGGTGAACACTAATTTAAC 773 consensus_6088#1 ------------------------------------------------------------ consensus_6088#2 ------------------------------------------------------------ consensus_6088#0 ATATTGATCCACAGCCAACATACATGGAGGGAGACAGTGTAGCATACTAAAAACAACCGC 833 consensus_6088#1 ------------------------------------------------------------ consensus_6088#2 ------------------------------------------------------------ consensus_6088#0 CAAACTAAT 842 consensus_6088#1 --------- consensus_6088#2 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||