These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [TTTTTTTTTGGTTTAATAATTTTATTAGCAATAAAAGTAGTAGATTTAGGGCTTTCTTCTGTTATTAATCTCCTTTTACACCGTGATTTTTTTTTATTTTTGTTTATATAGAAAGGCACGTGGCTGTTGTTATTTATCTTTGCTCGTTTCTTCGTTTTTGAGGGGAAAGAACAACAAAAATATTTCGCACTTCCGCAATTTAAATCATATCGGCCAGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCTTGCTGCTCTTGCTCGTCGCTCGATCGATCGCAATCTTCCGGTGCGCTACTGGTGTAGTTTTCTCCCCGCAGACCGGCGGCAATGTGGAGGTGCTGGATTCACGCACGCGACTCGAATACACTCTCCCCTTCCCTCACACTCCTTTCCTGTATTCCTCCCCTCTCGGACGCTACACTGCGCTTCCGCCACTCGCGCGTCTTGTTTCTTTTCCGTAAATGTCTCTGGAATCTTTCTTACAATATTTAGTTACTAACACACCACCACCCACCACCCCCGGCCACACAACAAACCACAACAGTACACCCGGAAGAACGAAGAGAGCAAAGAGAGAGAGAGACACAACACACTCTTGGGTTATTATATGCGGGTGCGCGGCGCTGGCCTGCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTTCTCCGTAGACAGCCGCGGCGCTAAATGGGGGTGCCCCTGCTGCTGCTACTGCGGACTGCTGGGTTGCTAAATCTGCTGTATCCTTGTGTCAATTCTTCTCTCCTGCGTTGTTGTTATTA] [+] EMBL CNS09GRZ [TTTTTTTTTGGTTTAATAATTTTATTAGCAATAAAAGTAGTAGATTTAGGGCTTTCTTCTGTTATTAATCTCCTTTTACACCGTGATTTTTTTTTATTTTTGTTTATATAGAAAGGCACGTGGCTGTTGTTATTTATCTTTGCTCGTTTCTTCGTTTTTGAGGGGAAAGAACAACAAAAATATTTCGCACTTCCGCAATTTAAATCATATCGGCCAGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCTTGCTGCTCTTGCTCGTCGCTCGATCGATCGCAATCTTCCGGTGCGCTACTGGTGTAGTTTTCTCCCCGCAGACCGGCGGCAATGTGGAGGTGCTGGATTCACGCACGCGACTCGAATACACTCTCCCCTTCCCTCACACTCCTTTCCTGTATTCCTCCCCTCTCGGACGCTACACTGCGCTTCCGCCACTCGCGCGTCTTGTTTCTTTTCCGTAAATGTCTCTGGAATCTTTCTTACAATATTTAGTTACTAACACACCACCACCCACCACCCCCGGCCACACAACAAACCACAACAGTACACCCGGAAGAACGAAGAGAGCAAAGAGAGAGAGAGACACAACACACTCTTGGGTTATTATATGCGGGTGCGCGGCGCTGGCCTGCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTTCTCCGTAGACAGCCGCGGCGCTAAATGGGGGTGCCCCTGCTGCTGCTACTGCGGACTGCTGGGTTGCTAAATCTGCTGTATCCTTGTGTCAATTCTTCTCTCCTGCGTTGTTGTTATTA] consensusID : consensus_6089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [CCGCGGACGCGTGGGCGGTTTTATTGGCGTTTTTTTCTCGTAGCTAAAGCTCTTTTTTAACCCTCTAGTCTTTGTTGGCGTATAAAAGCGTGTTTTTTTTAAACGAATGAATTGTACATTCACCCGCACACCAACGAAAGAGAAGAGAAAGGACAAGCCTTTTCTTCCCCTTTCTTATTCCAAAATTGCACTGATTTTGCATTTAACTATTAAAAACAAGAGCAATAGAGGGGGACGAAGAACGGTAGAGTAGTACAACATAGCGAGATAGCGAGACGGAATGTGAAATCAAAATCGCGAGAATCGATCGGAATACAATTAAGATAATTGCAAGCAAACGAACAAGTCTCCCCTTTCGTAGTGGAATCGAACATACATTTGCGAGCTAATTGAGATGATGATGGATAATGAGATGATAAAAATTGAACTTTCCATTTTTCCTAGAGAGCACACTACTAGCGCAGTCCAGCATGTTTGTCAAAGTTTTTGCTGTATCTTCTTCTCTTGTACCTCTTTAAATTAGCACATTAGAACAGGGCATTTCTAGTTCGTTTTTAAGCTTGGATATGGTTGTCCCAGAAACCCAGGAAGCATTTATGTCACCGCGCACCGTTAGTGGCAATATTTATTCGTCAGTACAAGGGATGATCCAAAATAACCACACCTCTTAAAATGTAACTCAGAAAATGGCTACACTCG] [+] EMBL BM629732 [CCGCGGACGCGTGGGCGGTTTTATTGGCGTTTTTTTCTCGTAGCTAAAGCTCTTTTTTAACCCTCTAGTCTTTGTTGGCGTATAAAAGCGTGTTTTTTTTAAACGAATGAATTGTACATTCACCCGCACACCAACGAAAGAGAAGAGAAAGGACAAGCCTTTTCTTCCCCTTTCTTATTCCAAAATTGCACTGATTTTGCATTTAACTATTAAAAACAAGAGCAATAGAGGGGGACGAAGAACGGTAGAGTAGTACAACATAGCGAGATAGCGAGACGGAATGTGAAATCAAAATCGCGAGAATCGATCGGAATACAATTAAGATAATTGCAAGCAAACGAACAAGTCTCCCCTTTCGTAGTGGAATCGAACATACATTTGCGAGCTAATTGAGATGATGATGGATAATGAGATGATAAAAATTGAACTTTCCATTTTTCCTAGAGAGCACACTACTAGCGCAGTCCAGCATGTTTGTCAAAGTTTTTGCTGTATCTTCTTCTCTTGTACCTCTTTAAATTAGCACATTAGAACAGGGCATTTCTAGTTCGTTTTTAAGCTTGGATATGGTTGTCCCAGAAACCCAGGAAGCATTTATGTCACCGCGCACCGTTAGTGGCAATATTTATTCGTCAGTACAAGGGATGATCCAAAATAACCACACCTCTTAAAATGTAACTCAGAAAATGGCTACACTCG] consensusID : consensus_6089#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence [TCTTCTGGATGTTCTTTCTCCGTAGACAGCCGCGGCGCTAAATGGGGTGCCCCTGCTGCTGCTACTGCGGACTGCTGGGTTGCTAAATCTGCTGTATCCTTGTGTCAATTCTTCTCTCCTGCGTTGTTGTTGTTGTTACTGGATCTGCTACCATTTGCGGAATTTGTTGCTTCTCTTGCTGCTCTCGCTCGTCGCTCGATCGATCGCAATCTTCCGGCGCGCTACTGGTGTAGTTTTCTCCCCGCAGACCGGCGGCAATGTGGAGGTGCTGGATTCACGCACGCGGCTAGAATACACTCTCCCTTCCCTCACACTCCTTCCCTGTATTCCTCCCCTCTCGGACGCTACACTGCGCTTCCGCCACTCGCGCGTCTTGTTTCTTTTCCGTAAATGTCTCTGGAATCTTTCTTACAATATTTAGTTACTAACACACCACCACCCACCACCCCCGGCCACACAACAAACCACAACAGTACACCCGGAAGAACGAAGAGAGAAAGAGAGAGAGAGACACAACACACTCTTGGTTATTATATGCGGGTGCGCGGCGCTGGCCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTCGTTTTTGAGGGGAAAGACAACAAAAGTATTTCGCACCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM618925 [TCTTCTGGATGTTCTTTCTCCGTAGACAGCCGCGGCGCTAAATGGGGTGCCCCTGCTGCTGCTACTGCGGACTGCTGGGTTGCTAAATCTGCTGTATCCTTGTGTCAATTCTTCTCTCCTGCGTTGTTGTTGTTGTTACTGGATCTGCTACCATTTGCGGAATTTGTTGCTTCTCTTGCTGCTCTCGCTCGTCGCTCGATCGATCGCAATCTTCCGGCGCGCTACTGGTGTAGTTTTCTCCCCGCAGACCGGCGGCAATGTGGAGGTGCTGGATTCACGCACGCGGCTAGAATACACTCTCCCTTCCCTCACACTCCTTCCCTGTATTCCTCCCCTCTCGGACGCTACACTGCGCTTCCGCCACTCGCGCGTCTTGTTTCTTTTCCGTAAATGTCTCTGGAATCTTTCTTACAATATTTAGTTACTAACACACCACCACCCACCACCCCCGGCCACACAACAAACCACAACAGTACACCCGGAAGAACGAAGAGAGAAAGAGAGAGAGAGACACAACACACTCTTGGTTATTATATGCGGGTGCGCGGCGCTGGCCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTCGTTTTTGAGGGGAAAGACAACAAAAGTATTTCGCACCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM581431 [ GAGAGAAAGACAGAGAGATACACAACACACTCTTGGTTATTATATGCGGGTGCGCGGCGCTGGCCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTGTTCGTTTTTGAGGGGAAAGACAACAAAAGTATTTCGCcgg ] consensusID : consensus_6089#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CGACCCACGCGTCCGAAGCGTCTTGCCGACGAGGAGGCTCGCGAGCGCGCCACCCTGCTGGGCAAGTTCCGCAACCTGGAGCACGACCTGGACAACCTGCGCGAGCAGGTTGAGGAGGAGGCTGAGGGCAAGGGAGACATCCAGCGCCAGCTCAGCAAGGCCAACGCTGAGGCTCAGCTGTGGCGCAGCAAGTACGAGTCGGAGGGCGTTGCTCGTGCCGAGGAGCTCGAGGAGGCCAAGCGTAAGCTGCAGGCCCGCCTTGCCGAGGCTGAGGAGACCATCGAGTCGCTGAACCAGAAGTGCATTGCACTGGAGAAGACCAAGCAGCGCCTGGCCACCGAGGTCGAGGATCTGCAGCTCGAGGTTGACCGTGCCTCGTCGATTGCCAACGCTGCTGAGAAGAAGCAGAAGGCGTTCGACAAGATCATTGGAGAATGGAAGCTGAAGGTCGACGATCTGGCCGCCGAGCTGGATGCCTCGCAGAAGGAGTGCCGCAACTACTCGACCGAGCTGTTCCGTCTGAAGGGTGCCTACGAGGAGGGCCAGGAGCAGCTTGAAGCCGTCCGCCGTGAGAACAAGAACTTGGCCGATGAGGTCAAGGATCTGCTGGACCAGATCGGTGAGGGTGGCCGCAACATCCA] [+] EMBL BM646370 [CGACCCACGCGTCCGAAGCGTCTTGCCGACGAGGAGGCTCGCGAGCGCGCCACCCTGCTGGGCAAGTTCCGCAACCTGGAGCACGACCTGGACAACCTGCGCGAGCAGGTTGAGGAGGAGGCTGAGGGCAAGGGAGACATCCAGCGCCAGCTCAGCAAGGCCAACGCTGAGGCTCAGCTGTGGCGCAGCAAGTACGAGTCGGAGGGCGTTGCTCGTGCCGAGGAGCTCGAGGAGGCCAAGCGTAAGCTGCAGGCCCGCCTTGCCGAGGCTGAGGAGACCATCGAGTCGCTGAACCAGAAGTGCATTGCACTGGAGAAGACCAAGCAGCGCCTGGCCACCGAGGTCGAGGATCTGCAGCTCGAGGTTGACCGTGCCTCGTCGATTGCCAACGCTGCTGAGAAGAAGCAGAAGGCGTTCGACAAGATCATTGGAGAATGGAAGCTGAAGGTCGACGATCTGGCCGCCGAGCTGGATGCCTCGCAGAAGGAGTGCCGCAACTACTCGACCGAGCTGTTCCGTCTGAAGGGTGCCTACGAGGAGGGCCAGGAGCAGCTTGAAGCCGTCCGCCGTGAGAACAAGAACTTGGCCGATGAGGTCAAGGATCTGCTGGACCAGATCGGTGAGGGTGGCCGCAACATCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6089#0 TTTTTTTTTGGTTTAATAATTTTATTAGCAATAAAAGTAGTAGATTTAGGGCTTTCTTCT 60 consensus_6089#2 ------------------------------------------------------------ consensus_6089#1 ------------------------------------------------------------ consensus_6089#3 ------------------------------------------------------------ consensus_6089#0 GTTATTAATCTCCTTTTACACCGTGATTTTTTTTTATTTTTGTTTATATAGAAAGGCACG 120 consensus_6089#2 --------------TCTTCTGGATGTTCTTTCTCCGTAGACAGCCGCGGCGCTAAATGGG 46 consensus_6089#1 --------CCGCGGACGCGTGGGCGGTTTTATTGGCGTTTTTTTCTCGTAGCTAAAGCTC 52 consensus_6089#3 -----------------------CGACCCACGCGTCCGAAGCGTCTTGCCGACGAGGAGG 37 * * consensus_6089#0 TGGCTGTTGTTATTTATCTTTGCTCGTTTCTTCGTTTTTGAGGGGAAAGAACAACAAAAA 180 consensus_6089#2 GTGCCCCTGCTGCT-GCTACTGCGGACTGCTGGGTTGCTAAATCTGCTGTATCCTTGTGT 105 consensus_6089#1 TTTTTTAACCCTCTAGTCTTTGTTGGCGTATAAAAGCGTGTTTTTTTTAAACGAATGAAT 112 consensus_6089#3 CTCGCGAGCGCGCC--ACCCTGCTGG---GCAAGTTCCGCAACCTGGAGCACGACCTGGA 92 ** * consensus_6089#0 TAT---TTCGCACTTCCGCAATTTAAATCATATCGGCCAGATTGGCTGGCATTTCCTCGA 237 consensus_6089#2 CAA---TTCTTCTCTCCTGCGTTGTTGTTGTTGTTACTGGATCTGCTACCATTTGCGGAA 162 consensus_6089#1 TGTACATTCACCCGCACACCAACGAAAGAGAAGAGAAAGGACAAGCCTTTTCTTCCCCTT 172 consensus_6089#3 CAACC-TGCGCGAGCAGGTTGAGGAGGAGGCTGAGGGCAAGGGAGACATCCAGCGCCAGC 151 * * * * consensus_6089#0 TGGTAGTGTTGTAATGCTTCTCTTGCTGCTCTTGCTCGTCGCTCGATCGATCGCAATCTT 297 consensus_6089#2 T-------TTGT--TGCTTCTCTTGCTGCTCTCGCTCGTCGCTCGATCGATCGCAATCTT 213 consensus_6089#1 TCTTATTCCAAAATTGCA-CTGATTTTGCATTTAACTATTAA--AAACAAGAGCAATAGA 229 consensus_6089#3 T-------CAGCAAGGCCAACGCTGAGGCTCAGCTGTGGCGC---AGCAAGTACGA-GTC 200 * ** * ** * * * * * consensus_6089#0 CCGGTGCGCT-ACTGGTGTAGTTTTCTCCCCGCAGACCGGCGGCAATGTGGA----GGTG 352 consensus_6089#2 CCGGCGCGCT-ACTGGTGTAGTTTTCTCCCCGCAGACCGGCGGCAATGTGGA----GGTG 268 consensus_6089#1 GGGGGACGAAGAACGGTAGAGTAGTA-CAACATAGCGAGATAGCGAGACGGAATGTGAAA 288 consensus_6089#3 GGAGGGCGTT-GCTCGTGCCGAGGAGCTCGAGGAGGCCAAGCGTAAGCTGCAGGCCCGCC 259 * ** ** * ** * * * * consensus_6089#0 CTGGATTCACGCACG-CGACTCGAATACACTCTCCCCTTCCCTCACACTCCTTTCCTGTA 411 consensus_6089#2 CTGGATTCACGCACG-CGGCTAGAATACACTCTCCC-TTCCCTCACACTCCTTCCCTGTA 326 consensus_6089#1 TCAAAATCGCGAGAATCGATCGGAATACAATTAAGA-TAATTGCAAGCAAACGAACAAGT 347 consensus_6089#3 TTGCCGAGGCTGAGGAGACCATCGAGTCGCTGAACCAGAAGTGCATTGCACTGGAGAAGA 319 * * * * ** consensus_6089#0 TTCCTCCCCTCTCGGACGCT-ACACTGCGCTTCCGCCACTCGCGCGTCTTGTTTCTTTTC 470 consensus_6089#2 TTCCTCCCCTCTCGGACGCT-ACACTGCGCTTCCGCCACTCGCGCGTCTTGTTTCTTTTC 385 consensus_6089#1 CTCCCCTTTCGTAGTGGAAT-CGAACATACATTTGCGAGCTAATTGAGATGATGATGGAT 406 consensus_6089#3 CCAAGCAGCGCCTGGCCACCGAGGTCGAGGATCTGCAGCTCGAG---GTTGACCGTGCCT 376 * * * ** ** * consensus_6089#0 CGTAAATGTCTCTGGAATCTTTCTTACAATATTTAGTTACTAACACACCACCACCCACCA 530 consensus_6089#2 CGTAAATGTCTCTGGAATCTTTCTTACAATATTTAGTTACTAACACACCACCACCCACCA 445 consensus_6089#1 AATGAG-ATGATAAAAATTGAACTTTCCATTTTTCCTAGAGAGCACACTACTAGCG--CA 463 consensus_6089#3 CGTCGA----TTGCCAACGCTGCTGAGAAGA---AGCAGAAGGCGTTCGACAAGAT--CA 427 * ** ** * * * ** * ** consensus_6089#0 CCCCCGGCCACACAACAAA-CCACAACAGTACACCCGGAAGAACGAAGAGAGCAAAGAGA 589 consensus_6089#2 CCCCCGGCCACACAACAAA-CCACAACAGTACACCCGGAAGAACGAAGAGAG-AAAGAGA 503 consensus_6089#1 GTCCAGCATGTTTGTCAAAGTTTTTGCTGTATCTTCTTCTCTTGTACCTCTTTAAATTAG 523 consensus_6089#3 TTGGAGAATGGAAGCTGAA-GGTCGACGATCTGGCCGCCGAGCTGGATGCCTCGCAGAAG 486 * ** * * * * consensus_6089#0 GAGAGAGACACAACACACTCTTGGGTTATTATATGCGGGTGCGCGGCGCTGGCCTGCTGC 649 consensus_6089#2 GAGAGAGACACAACACACTCTTGG-TTATTATATGCGGGTGCGCGGCGCTGGCCTGCTGC 562 consensus_6089#1 CACATTAGAACAGGGCATTTCTAGTTCGTT-TTTAAGCTTGGATATGGTTGTCCCAGAAA 582 consensus_6089#3 GAGTGCCGCA-ACTACTCGACCGAGCTGTT----CCGTCTGAAGGGTGCCTACGAGGAGG 541 * * * * ** * ** * * consensus_6089#0 TGCTGCTGCTGTT---GTTATTTATCTTTGCTCGTTTCTTTCTCCG-TAGACAGCCGCGG 705 consensus_6089#2 TGCTGCTG---TT---GTTATTTATCTTTGCTCGTTTCTTCGTTT--TTGAGGGGAAAGA 614 consensus_6089#1 CCCAGGAAGCATTTATGTCACCGCGCACCGTTAGTGGCAATATTTATTCGTCAGTACAAG 642 consensus_6089#3 GCCAGGAGCAGCTT--GAAGCCGTCCGCCGTGAGAACAAGAACTTGGCCGATGAGGTCAA 599 * * * * * * * * consensus_6089#0 CGCTAAATGGGGGTGCCCCTGCTGCTGCTACTGCGGACTGCTGGGTTGCTAAATCTGCTG 765 consensus_6089#2 CAACAAA--AGTATTTCGCACCGGACGCGTGGGCGGACGCGTGGGCGG------------ 660 consensus_6089#1 GGATGATCCAAAATAACCACACCTCTTAAAATGTAACTCAGAAAATGGCTACACTCG--- 699 consensus_6089#3 GGATCTGCTGGACCAGATCGGTGAGGGTGGCCGCAACATCCA------------------ 641 * consensus_6089#0 TATCCTTGTGTCAATTCTTCTCTCCTGCGTTGTTGTTATTA 806 consensus_6089#2 ----------------------------------------- consensus_6089#1 ----------------------------------------- consensus_6089#3 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||