cluster # 6090

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Anopheles gambiae
cluster # 6090 cluster # 6090 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6090#0 length = 791 sequences # 4

consensus_6090#1 length = 511 sequences # 1

consensusID : consensus_6090#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 791
fasta sequence

                              [GCCGTTGCAGGCTGCAGACCGCGTGGTTGAACCTGAAAAGTGTGTGTATCCCCTTCGTTTACGAATTTTCGTGTTCATCATTTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTCATAAAGCTTTTAG------TTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATCGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAAGTGACTGTGAAGAAGACTTCCTCCCCCGGGGTACGTTTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAACAAAGCTTCCACAAGGGAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTGAAACAGATCGTCGGCGTCTCCGATATCACCGAGAACCGCAACATATGGCGCATGCTGGTGGCCGAGTTTCTCGGCACCTTCTTTCTGGTGGCGATCGGCATCGGTAGCACGACCGGCTGGACCGACTACAGTCCCACGCTCACGCAGATTGCGTTCACCTTCGGCCTGGTGGTCGCCACGCTTGCACAGGCATTCGGGCACGTGAGCGGATGCCACATCAATCCGGCCGTCACGATCGGGCTGATGGTAACGGCCGACGTCAGCATACTGAAGGGTGCTTTCTACATCGTTTCCCAGT]

[+] EMBL BM625880             [GCCGTTGCAGGCTGCAGACCGCGTGGTTGAACCTGAAAAGTGTGTGTATCCCCTTCGTTTACGAATTTTCGTGT   GCATTTTGCGGTTTTTAACCGAAATCGTGTAGCTTCTTCAAGTGGTTTATAAAGCTTTTAGTTTTTTTTTTTTGCTATTTGGTAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTC AAACCCAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAAGTGACTGTGAAGAAGACTTCCTCCCCCGGGGTACGGTTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTCCGACTATTCGACTCTTTAGAGCGGAAGCAACAACAAAGCTTCCACAAGGAAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTG                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM653239             [     ccgAGGCTGCAGACCGCGTGGTTGAACCTGAAAAGTGTGTGTATCCCCTTCGTTTACGAATTTTCGTGTTCATCATTTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTCATAAAGCTTTTAG      TTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATCGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAAGTGACTGTGAAGAAGACTTCCTCCCCCGGGGTACGTTTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGACACAACAAAGCTTCCACAAGGGAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTGAAACAGATCGTCGGCGTCTCCGATATCACCGAGAACCGCAACATATGGCGCATGCTGG                                                                                                                                                                                                                                                ]
[+] EMBL BM653552             [                                 ccgAAAGTGTGTGTATCCCCTTCGTTTACGAATTTTCGTGTTCATCATTTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTCATAAAGCTTTTAG      TTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATCGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAAGTGACTGTGAAGAAGACTTCCTCCCCCGGGGTACGTTTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGACACAACAAAGCTTCCACAAGGGAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTGAAACAGATCGTCGGCGTCTCCGATATCACCGAGAACCGCAACATATGGCGCATGCTGGTG                                                                                                                                                                                                                                              ]
[+] EMBL BM596683             [                                                                                                                                                                                                                                                                                                                      ccgGTGAAGAAGACGTTCTCCCCCGGGGTACG TTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTACGACTATTCGACTCTTTTGAGCGGAAGCAACAACAAAGCTTCCACAAGGGAGAAAGCAGTGTTTTGGGTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTGAAACAGATCGTCGGCGTCTCCGATATCACCGAGAACCGCAACATATGGCGCATGCTGGTGGCCGAGTTTCTCGGCACCTTCTTTCTGGTGGCGATCGGCATCGGTAGCACGACCGGCTGGACCGACTACAGTCCCACGCTCACGCAGATTGCGTTCACCTTCGGCCTGGTGGTCGCCACGCTTGCACAGGCATTCGGGCACGTGAGCGGATGCCACATCAATCCGGCCGTCACGATCGGGCTGATGGTAACGGCCGACGTCAGCATACTGAAGGGTGCTTTCTACATCGTTTCCCAGT]




>consensus_6090#0
GCCGTTGCAGGCTGCAGACCGCGTGGTTGAACCTGAAAAGTGTGTGTATCCCCTTCGTTT
ACGAATTTTCGTGTTCATCATTTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGT
GGTTCATAAAGCTTTTAGTTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTG
TATCCATCAGCACACTTCAAAATCGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTC
CCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTA
AGTGACTGTGAAGAAGACTTCCTCCCCCGGGGTACGTTTTTGGTGAGGAGGTTCACGGTT
GATTAGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAACAAAGCTTCCACAAGG
GAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGA
AAGCGCAGGAGTGAAACAGATCGTCGGCGTCTCCGATATCACCGAGAACCGCAACATATG
GCGCATGCTGGTGGCCGAGTTTCTCGGCACCTTCTTTCTGGTGGCGATCGGCATCGGTAG
CACGACCGGCTGGACCGACTACAGTCCCACGCTCACGCAGATTGCGTTCACCTTCGGCCT
GGTGGTCGCCACGCTTGCACAGGCATTCGGGCACGTGAGCGGATGCCACATCAATCCGGC
CGTCACGATCGGGCTGATGGTAACGGCCGACGTCAGCATACTGAAGGGTGCTTTCTACAT
CGTTTCCCAGT

consensusID : consensus_6090#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [GAATCGCCCCGAGGNTATCCCCTTCGTNTACGAANTTTTCGTGTGCATTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTTATAAAGCATTGTAGTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATTGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAACGTGACTGTGAACGAAGACTTCCTCCCCCGGGGTACGTNNTTNGGTGAGGAGGTTCACGGTTGAGTTAGGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAAACAAAGCTTCCACAAGGGAGAAAGCAGCGTTAAACGACGAGAAGCNATCCATCGCAGCTAAACAGATGACTGAACAGCGCAGGAGTGAAACAGATCGTCGGCGTCATCCGAGTATCACCGAGAACCGGAACATATG]

[+] EMBL AL930253             [GAATCGCCCCGAGGNTATCCCCTTCGTNTACGAANTTTTCGTGTGCATTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTTATAAAGCATTGTAGTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATTGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAACGTGACTGTGAACGAAGACTTCCTCCCCCGGGGTACGTNNTTNGGTGAGGAGGTTCACGGTTGAGTTAGGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAAACAAAGCTTCCACAAGGGAGAAAGCAGCGTTAAACGACGAGAAGCNATCCATCGCAGCTAAACAGATGACTGAACAGCGCAGGAGTGAAACAGATCGTCGGCGTCATCCGAGTATCACCGAGAACCGGAACATATG]




>consensus_6090#1
GAATCGCCCCGAGGNTATCCCCTTCGTNTACGAANTTTTCGTGTGCATTTGCAGTTTTTA
ATCGAAATCGTGTAGCTTCTTCAAGTGGTTTATAAAGCATTGTAGTGTTTGCTATTTTAA
AACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATTGAAGGAGCAC
CCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCT
GCCCGGAACGGCCGGTCCCAAAGTTAACGTGACTGTGAACGAAGACTTCCTCCCCCGGGG
TACGTNNTTNGGTGAGGAGGTTCACGGTTGAGTTAGGCGCTCCGACTATTCGACTCTTTT
GAGCGGAAGCAACAAACAAAGCTTCCACAAGGGAGAAAGCAGCGTTAAACGACGAGAAGC
NATCCATCGCAGCTAAACAGATGACTGAACAGCGCAGGAGTGAAACAGATCGTCGGCGTC
ATCCGAGTATCACCGAGAACCGGAACATATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6090#0      GCCGTTGCAGGCTGCAGACCGCGTGGTTGAACCTGAAAAGTGTGTGTATCCCCTTCGTTT 60
consensus_6090#1      ----------------------------GAATC---GCCCCGAGGNTATCCCCTTCGTNT 29
                                                  *** *        * *  ************ *

consensus_6090#0      ACGAATTTT-CGTGTTCATCATTTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAG 119
consensus_6090#1      ACGAANTTTTCGTGTGCAT----TTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAG 85
                      ***** *** ***** ***    *************************************

consensus_6090#0      TGGTTCATAAAGCTTTTAGTTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCT 179
consensus_6090#1      TGGTTTATAAAGCATTGTAGTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCT 145
                      ***** ******* **    ****************************************

consensus_6090#0      GTATCCATCAGCACACTTCAAAATCGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTT 239
consensus_6090#1      GTATCCATCAGCACACTTCAAAATTGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTT 205
                      ************************ ***********************************

consensus_6090#0      CCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTT 299
consensus_6090#1      CCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTT 265
                      ************************************************************

consensus_6090#0      AA-GTGACTGTGAA-GAAGACTTCCTCCCCCGGGGTACGTTTTTGG-TGAGGAGGTTCAC 356
consensus_6090#1      AACGTGACTGTGAACGAAGACTTCCTCCCCCGGGGTACGTNNTTNGGTGAGGAGGTTCAC 325
                      ** *********** *************************  ** * *************

consensus_6090#0      GGTTGATT--AGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAA-CAAAGCTTC 413
consensus_6090#1      GGTTGAGTTAGGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAAACAAAGCTTC 385
                      ****** *   *************************************** *********

consensus_6090#0      CACAAGGGAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCA-TCCATCGCAGCTAAA-A 471
consensus_6090#1      CACAAGGGAGAAAGCAGC------GTTAAACGACGAGAAGCNATCCATCGCAGCTAAACA 439
                      *****************       *****************  *************** *

consensus_6090#0      GATGACTGAA-AGCGCAGGAGTGAAACAGATCGTCGGCGTC-TCCGA-TATCACCGAGAA 528
consensus_6090#1      GATGACTGAACAGCGCAGGAGTGAAACAGATCGTCGGCGTCATCCGAGTATCACCGAGAA 499
                      ********** ****************************** ***** ************

consensus_6090#0      CCGCAACATATGGCGCATGCTGGTGGCCGAGTTTCTCGGCACCTTCTTTCTGGTGGCGAT 588
consensus_6090#1      CCGGAACATATG------------------------------------------------ 511
                      *** ********                                                

consensus_6090#0      CGGCATCGGTAGCACGACCGGCTGGACCGACTACAGTCCCACGCTCACGCAGATTGCGTT 648
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      CACCTTCGGCCTGGTGGTCGCCACGCTTGCACAGGCATTCGGGCACGTGAGCGGATGCCA 708
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      CATCAATCCGGCCGTCACGATCGGGCTGATGGTAACGGCCGACGTCAGCATACTGAAGGG 768
consensus_6090#1      ------------------------------------------------------------
                                                                                  

consensus_6090#0      TGCTTTCTACATCGTTTCCCAGT 791
consensus_6090#1      -----------------------