These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 808 fasta sequence [CCGGTAATTTTTTCGTGTACATTCTACGCTTTTATTTAGACGCTTGACGCTTCGGTGGCCGTG-CGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTACATCGCCCGTGACACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCACACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGTTCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGTGCCTGGAGGCGTTGCTGGTCAACTCGCCGAACGCGAAGATCTTCTGCCTCGTGCACAAGATGGACCTGGTGGCGGAGGAGCAGCGCGACATAATATTCAAGGAGCGCGAGGAGGACCTGAAGCGCTGTTCGCGCCCGCTCGAGTGTACGGCATTCCGGACGAGCATCTGGGACGAGACGCTGTACCGGGCGTGGAGCAGCATCGTCTACCAGCTGATCCCGAACGTGAAGGCGCTGGAGCACTCGCTCAACTACTTCGCGAACGTGGTGGACGCGGACGAGGTGCTGCTGTTCGAGCGGGCCACCTTTCTGGTGATTTCGCACTGCCAGCGCAAACAGCACCGGGACAGCCACCGGTTTCGAGAAGGTGTCGAACATCATCAAACAGTTC] [+] EMBL BM609096 [CCGGTAATTTTTTCGTGTACATTCTACGCTTTTATTTAGACGCTTGACGCTTCGGTGGCCGTG CGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTACATCGCCCGTGACACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCACACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGTTCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGTGCCTGGAGGCGTTGCTGGTCAACTCGCCGAACGCGAAGATCTTCTGC ] [+] EMBL BM609086 [CCGGTAATTTTTTCGTGTACATTCTACGCTTTTATTTAGACGCTTGACGCTTCGGTGGCCGTGCCGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTA ] [+] EMBL BX626976 [ GCCGTG CGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTACATCGCCCGTGACACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCACACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGTTCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGTGCCTGGAGGCGTTGCTGGTCAACTCGCCGAACGCGAAGATCTTCTGCCTCGTGCACAAGATGGACCTGGTGGCGGAGGAGCAGCGCGACATAATATTCAAGGAGCGCGAGGAGGACCTGAAGCGCTGTTCGCGCCCGCTCGAGTGTACGGCATTCCGGACGAGCATCTGGGACGAGACGCTGTACCGGGCGTGGAGCAGCATCGTCTACCAGCTGATCCCGAACGTGAAGGCGCTGGAGCACTCGCTCAACTACTTCGCGAACGTGGTGG ] [+] EMBL BM656469 [ ccgAAAAGGTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCCAACTACATCGCCCGTGACACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCACACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGTTCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGATCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGTGCCTGGAGGCGTTGCTGGTCAACTCGCCGAACGCGAAGATCTTCTGCCTCGTGCACAAGATGGACCTGGTGGCGGAGGAGCAGCGCGACATAATATTCAAGGAGCGCGAGGAGGACCTGAAGCGCTGTTCGCGCCCGCTCGAGTGTACGGCATTCCGGACGAGCATCTGGGACGAGACGCTGTACCGGGCGTGGAGCAGCATCGTCTACCAGCTGATCCCGAACGTGAAGGCGCTGGAGCACTCGCTCAACTACTTCGCGAACGTGGTGGACGCGGACGAGGTGCTGCTGTTCGAGCGGGCCACCTTTCTGGTGATTTCGCACTGCCAGCGCAAACAGCACCGGGACAGCCACCGGTTTCGAGAAGGTGTCGAACATCATCAAACAGTTC] consensusID : consensus_6094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CCGGGACTCGTTACTGCTGGGTCCAAAACTAGACAAGAAAAGAACAAAAAAACAGGCCTTTTTTACCGGTTCCACCATGAAAAGGTGCACTATCTAAGTTTAATTAAGTAGTGAACCGTGAGCTACGCAAAGGATAATGTATGCAATAGATATTACGAAAGCAGCATAGGAGTACAGCAGCCGTCGAGGTGTGCGATAAGAACGAACACACACACACACGAAATACACGACGGTGTAAGATGTAATCAGTATATCGATAGAGCGAAACGATTAATGTGTGTTGGTGTGTGAAGAACGAGTTTTGGAGCCGCGAGAGTCGAGGCCAACGCGCAGAAATTAGCCCCCAACTGCATTCTCTCGGTGACTCATTCCCCGCTCATCCCGCCGGTTGCTGCTCAAGATGGATGGATGGTACACGACCATTTGCTCCTGTGAAAAGGGAAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCTACTACTACTACTACGACGTACCTTCCTCGTCATCGTGCAACGGCTGTGGATGTGTGCGTGTATTAGAGCGATGGAACCGTCATTGTTCCTCCCGCACACCCCTTCTACACGTGCCCCTGGAATGCTGTCCCTGTCCCGGATGATGCTGCTGCTGCGGAAAGGCCCTCCCGTGCGTTCTACACCCTGTCCCGCACCGCTACCCGTCGCCTGTCCTGCCG] [+] EMBL BM652156 [CCGGGACTCGTTACTGCTGGGTCCAAAACTAGACAAGAAAAGAACAAAAAAACAGGCCTTTTTTACCGGTTCCACCATGAAAAGGTGCACTATCTAAGTTTAATTAAGTAGTGAACCGTGAGCTACGCAAAGGATAATGTATGCAATAGATATTACGAAAGCAGCATAGGAGTACAGCAGCCGTCGAGGTGTGCGATAAGAACGAACACACACACACACGAAATACACGACGGTGTAAGATGTAATCAGTATATCGATAGAGCGAAACGATTAATGTGTGTTGGTGTGTGAAGAACGAGTTTTGGAGCCGCGAGAGTCGAGGCCAACGCGCAGAAATTAGCCCCCAACTGCATTCTCTCGGTGACTCATTCCCCGCTCATCCCGCCGGTTGCTGCTCAAGATGGATGGATGGTACACGACCATTTGCTCCTGTGAAAAGGGAAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCTACTACTACTACTACGACGTACCTTCCTCGTCATCGTGCAACGGCTGTGGATGTGTGCGTGTATTAGAGCGATGGAACCGTCATTGTTCCTCCCGCACACCCCTTCTACACGTGCCCCTGGAATGCTGTCCCTGTCCCGGATGATGCTGCTGCTGCGGAAAGGCCCTCCCGTGCGTTCTACACCCTGTCCCGCACCGCTACCCGTCGCCTGTCCTGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6094#0 CCGGTAATTTTTTCGTGTACATTCTACGCTTTTATTTAGACGCTTGACGCTTCGGTGGCC 60 consensus_6094#1 ------------------------------------------------------------ consensus_6094#0 GTGCGCACATATTTCTTCCCCGCAGCCAAACTAGCGCGCCCAGACACAATGAAGAAAAAG 120 consensus_6094#1 -CCGGGACTCGTTACTGCTGGGTC-CAAAACTAG---ACAAGAAAAGAACAAAAAAACAG 55 * ** ** ** * * * ******* * * * ** ** *** ** consensus_6094#0 GTGCTCCTGATGGGCAAGAGCGGCTCTGGCAAGACCAGCATGCGTTCGATCATCTTCGCC 180 consensus_6094#1 GCCTTTTTTAC---------CGGTTCCACCATGAAAAG-GTGCACTATCTAAGTTTAATT 105 * * * * *** ** ** ** ** *** * * * ** consensus_6094#0 AACTACATCGCCCGTGA--CACACGAAGGCTGGGGGCCACAATCGATGTCGAACACTCAC 238 consensus_6094#1 AAGTA-GTGAACCGTGAGCTACGCAAAGGATAATGTATGCAATAGATATT--------AC 156 ** ** * ****** ** * **** * * **** *** * ** consensus_6094#0 ACGTCCGCTTTTTGGGCAATCTCGTGCTCAACCTGTGGGACTGCGGTGGGCAGGAATCGT 298 consensus_6094#1 GAAAGCAGCATAGGAGTACAGCAGCCGTCGAGGTGTGCGATAAGAACGAACACACA-CAC 215 * * * * * * ** * **** ** * ** * * consensus_6094#0 TCATGGAGCAGTACTTCGCCTCACAGAAGGACAACATCTTCCGGAACGTGGAGGTGCTGA 358 consensus_6094#1 ACACGAAATA-CACGACGGTGTAAGATGTAATCAGTATATCGATAGAGCGAAACGATTAA 274 ** * * * ** ** * * * ** * * * * * * consensus_6094#0 TCTACGTGTTCGATGTGGAGAGCCGCGAGCTGGACAAGGACATGCACTACTACCAGTCGT 418 consensus_6094#1 TGTGTGT---TGGTGTGTGAAGA-ACGAGTTTTGGAGCCGCGAGAGTCGAGGCCAA-CGC 329 * * ** * **** ** **** * * * * *** ** consensus_6094#0 GCCTGGAGGCGTTGCTGGTCA-ACTCGCCGAACGCGAAGATCTTCTGCCTCGTGCACAAG 477 consensus_6094#1 GCAGAAATTAGCCCCCAACTGCATTCTCTCGGTG-ACTCATTCCCCGCTCATCCCGCCGG 388 ** * * * * ** * * ** * ** * * * consensus_6094#0 ATGGACCTGGTGGCGGAGGAGCAGCGCGACATAATATTCAAGGAGCGCGAGGAGGACCTG 537 consensus_6094#1 TTGCTGCTCAAGATGGATGGATGGT---ACACGACCATTTGCTCCTGTGAAAAGG----G 441 ** ** * *** * * *** * * * ** *** * consensus_6094#0 AAGCGCTGTTCGCGCCCGCTCGAGTGTACGGCATTCCGGACGAGCATCTGGGACGAGACG 597 consensus_6094#1 AAAAGATGGACGCTGCTGCTACTGCAAACACCACTGCT-ACTACTA-CTACTACGACGTA 499 ** * ** *** * *** * ** ** * * ** * * ** **** consensus_6094#0 CTGTACCGGGCGTGGAGCAGCATCGTCTACCAGCTGATCCCGAACGTGAAGGCGCTGGAG 657 consensus_6094#1 CCTTCCTCGTCATCGTGCAAC---GGCTGT-GGATGTGTGCGTGTATTAGAGCGATGGAA 555 * * * * * * * *** * * ** * ** ** * * *** **** consensus_6094#0 CACTCGCT-CAACTACTTCGCGAACGTGGTGGACGCGGAC--GAGGTGCTGCTGTTCGAG 714 consensus_6094#1 CCGTCATTGTTCCTCCCGCACACCCCTTCTACACGTGCCCCTGGAATGCTGTCCCTGTCC 615 * ** * ** * * * * * * *** * * * ***** * consensus_6094#0 CGGGCCACCTTTCTGGTG-ATTTCGCACTGCCAGCGCAAACAGCACCGGGACAGCCACCG 773 consensus_6094#1 CGGATGATGCTGCTGCTGCGGAAAGGCCCTCCCGTGCGTTCTACACCCTGTCCCGCACCG 675 *** * * *** ** * * ** * ** * **** * * ***** consensus_6094#0 GTTTCGAGAAGGTGTCGAACATCATCAAACAGTTC 808 consensus_6094#1 CTACCCGTCGCCTGTCCTGCCG------------- 697 * * **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||