These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 987 fasta sequence [TAATGATTAGTACCTACTTCTTCCACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGGTGTGACACTATTCTTCTGCAATAATATTTAAATCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCAACTCTATCATAACTTTTATCCTTTATCTCTAATCTACATATATATCTAAAAACAAAACGAACAAAAAATCCCAACTATTTACTCAATTCCTGTTACAAACAACACACAAATACGTTTTGCTACGTTTTGAATCTACGGTTGACGATGACGATGAGGTGTAAACCCCCTGACTGATATAGCGTTAGTAAAGGCGGAAGATAGGGAGAGAGACACTTGGTGAGAAGAACCTATTACACACCCGAATGAGTAAGCGCGTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGGTAGACTCAAGGTGATAGGGCGAAGAACGGAGACACGCGTTACACGAGCGTTACACACACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACACGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATACAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCCGTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAAGAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCTACAGCATAAAGTTAACAAACCGCAAACCCAGGAGCAGAACAGAGACTCATGTAATGGTTCATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTATTAATGAGAATAAAAATATTGCGTCCC] [+] EMBL CNS090QE [TAATGATTAGTACCTACTTCTTCCACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGGTGTGACACTATTCTTCTGCAATAATATTTAAATCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCAACTCTATCATAACTTTTATCCTTTATCTCTAATCTACATATATATCTAAAAACAAAACGAACAAAAAATCCCAACTATTTACTCAATTCCTGTTACAAACAACACACAAATACGTTTTGCTACGTTTTGAATCTACGGTTGACGATGACGATGAGGTGTAAACCCCCTGACTGATATAGCGTTAGTAAAGGCGGAAGATAGGGAGAGAGACACTTGGTGAGAAGAACCTATTACACACCCGAATGAGTAAGCGCGTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGGTAGACTCAAGGTGATAGGGCGAAGAACGGAGACACGCGTTACACGAGCGTTACACACACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACACGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATACAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCCGTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAAGAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCTACAGCATAAAGTTAACAAACCGCAAACCCAGGAGCAGAACAGAGACTCATGTAATGGTTCATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTATTAATGAGAATAAAAATATTGCGTCCC] [-] EMBL CNS090QF [ GTCTAAAGGGGAAGGTGTGACACTATTCTTCTGCAATAATATTTAAATCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCAACTCTATCATAACTTTTATCCTTTATCTCTAATCTACATATATATCTAAAAACAAAACGAACAAAAAATCCCAACTATTTACTCAATTCCTGTTACAAACAACACACAAATACGTTTTGCTACGTTTTGAATCTACGGTTGACGATGACGATGAGGTGTAAACCCCCTGACTGATATAGCGTTAGTAAAGGCGGAAGATAGGGAGAGAGACACTTGGTGAGAAGAACCTATTACACACCCGAATGAGTAAGCGCGTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGGTAGACTCAAGGTGATAGGGCGAAGAACGGAGACACGCGTTACACGAGCGTTACACACACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACACGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATACAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCCGTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAAGAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCTACAGCATAAAGTTAACAAACCGCAAACCCAGGAGCAGAACAGAGACTCATGTAATGGTTCATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTATTAATGAGAATAAAAATATT CGTCCC] [+] EMBL BX609146 [ GTAAAGGCGGAAG AGGGAGAGAGACACTTGGTGAGAAGAACCTATTACACACCCGAATGAGTAAGCGCGTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGTTAGACTCAAGGTGATAGGGCGAAGAACGGAGACACGCGTTACACGAGCGTTACACACACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACACGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATACAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCCGTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAAGAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCTACAGCATAAAGTTAACAAACCGCAAACCCATGAGCAGAACAGAGACTCATGTAATGGTTCATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTAT ] consensusID : consensus_6100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence [TGCTCAGCACATCGCCGAGGTTAGTATATTATTATTTTATATTAATTAAATGGGTGATCATCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAGCGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACCACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAAGGCGTTATTTTTTTAAAAAGGATTCGTTTGTTGTCGTAGACAACGGTTAATGATTAGTACCTACTTCTTCCACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGNGTGTGACACTATTCTTCTGCAATAATATTTAAACTCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCCACCTCTATCATAACTTTGTATCCTTTATCTCGTAAGTCTACATATAGTAGTCTAGANGAGACAAAACGGAACGAAGAAAATCCCCAGACGTAATTCTCACGTCAAGTTCCCGTGGTNACAAGACAANCGAANAGCGAAAGTAGCNGTTTGTGCCTACGGCTTTTGAGGAAGTCGTACCGGGTTTGAACGACTGACCGAATTGAGGGTGTTAACACCNCCNCTGGACCGAANNATAGCGTTNAGTAAAGGCGGGACNCGATNTCNCGGGGAGAAG] [+] EMBL AL934952 [TGCTCAGCACATCGCCGAGGTTAGTATATTATTATTTTATATTAATTAAATGGGTGATCATCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAGCGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACCACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAAGGCGTTATTTTTTTAAAAAGGATTCGTTTGTTGTCGTAGACAACGGTTAATGATTAGTACCTACTTCTTCCACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGNGTGTGACACTATTCTTCTGCAATAATATTTAAACTCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGTGCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCCACCTCTATCATAACTTTGTATCCTTTATCTCGTAAGTCTACATATAGTAGTCTAGANGAGACAAAACGGAACGAAGAAAATCCCCAGACGTAATTCTCACGTCAAGTTCCCGTGGTNACAAGACAANCGAANAGCGAAAGTAGCNGTTTGTGCCTACGGCTTTTGAGGAAGTCGTACCGGGTTTGAACGACTGACCGAATTGAGGGTGTTAACACCNCCNCTGGACCGAANNATAGCGTTNAGTAAAGGCGGGACNCGATNTCNCGGGGAGAAG] consensusID : consensus_6100#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGGCAACAGGACCGACGCCGGTTGCACTACCATCTGGCCAGTATCTTCCCGGAAGATCAAGTGCAAACCGTCATGCAGATGTACCCGGACGAGACGAATCCCCAGACAATATGTGCCGCCATCTTGGCCATGTATCAAAAGATGTAAAGCGTCGGATCTGCGATGGACGCATGCAATACTCAAAACACTCCTTAGGTGTTAGGCAAAATTATACTGTTCTTTATTACTCTTTCTTTCCCTATCTCTCTGCTTCCGTTGGAGATGCATGAGAGGAACCCGATCGGGTTGGCAATACTGTGTGCCCTTGTACTTTTGTTTGTTACGACTGCAAGTTACGACTTATCGCGAAAGAGAGAGTGAGAGCGAGAGAGTGTGTGTAGAGAGAGGTTATATTATTATTTTATATTAATTAAATGGGTGATCATCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAGCGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACCACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAAGGCGTTATTTTTTTAAAAAGGATTCGTTTGTTGTCGTAGACCACGGTTAATGATTAGTACCTAC] [+] EMBL BM613409 [CCGGCAACAGGACCGACGCCGGTTGCACTACCATCTGGCCAGTATCTTCCCGGAAGATCAAGTGCAAACCGTCATGCAGATGTACCCGGACGAGACGAATCCCCAGACAATATGTGCCGCCATCTTGGCCATGTATCAAAAGATGTAAAGCGTCGGATCTGCGATGGACGCATGCAATACTCAAAACACTCCTTAGGTGTTAGGCAAAATTATACTGTTCTTTATTACTCTTTCTTTCCCTATCTCTCTGCTTCCGTTGGAGATGCATGAGAGGAACCCGATCGGGTTGGCAATACTGTGTGCCCTTGTACTTTTGTTTGTTACGACTGCAAGTTACGACTTATCGCGAAAGAGAGAGTGAGAGCGAGAGAGTGTGTGTAGAGAGAGGTTATATTATTATTTTATATTAATTAAATGGGTGATCATCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAGCGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACCACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAAGGCGTTATTTTTTTAAAAAGGATTCGTTTGTTGTCGTAGACCACGGTTAATGATTAGTACCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6100#0 ------------------------TA-ATGATTAGTACCTACTTCTTCCACCAGTGACCG 35 consensus_6100#1 TGCTCAGCACATCGCCGAGGTTAGTATATTATTATTTTATATTAATTAAATGGGTGATCA 60 consensus_6100#2 -------------------------------CCGGCAAC-AGGACCGACGCCGGTTG-CA 27 * ** * consensus_6100#0 CTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGGTGTGACACTATTCTTCTGCAATA 95 consensus_6100#1 TCAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGA 120 consensus_6100#2 CTACCATCTG--GCCAGTATCTTCCCGGAAGATCAAGTGCAA----ACCGTCATGCAGAT 81 * * * * * * ** * consensus_6100#0 ATATTTAAATCTATAAGAAAACCGAGAGAGACCGTGGAAGGGAAGGAGGGAGAGAAACGT 155 consensus_6100#1 GCGTTCAAAGGACAGAGAGAAGCAAGGCAAA---TTGAGCGCGAGGTGGCGAAGAATCA- 176 consensus_6100#2 GTACCCGGA-CGAGACGAATCCCCAGACAATATGTGCCGCCATCTTGGCCATGTATCAAA 140 * ** * ** * * * * consensus_6100#0 GCTTGTATTGTGAAGTAGGAAAGGCAAATACATCTTCAACTCTATCATAACTTTTATCCT 215 consensus_6100#1 -CCACCACCCCCCAACAGTGAGAGT--GTATAATCTCAGC---AAAAAGGCGTTATTTTT 230 consensus_6100#2 AGATGTAAAGCGTCGGATCTGCGATGGACGCATGCAATACTC-AAAACACTCCTTAGGTG 199 * * * * * * * consensus_6100#0 TTATCTCTAATCTACATATATATCTAAAAACAAAACGAACAAAAAATCCCAACTATTTAC 275 consensus_6100#1 TTAAAAAGGATTCGTTTGT-TGTCGTAGACAACGGTTAATGATTAGTACCTACTTCTTCC 289 consensus_6100#2 TTAGGCAAAATTATACTGT-TCTTTATTACTCTTTCTTTC-------CCTATCTCTCTGC 251 *** ** * * * * * * ** * * consensus_6100#0 -TCAATTCCTGTTACAAACAA-CACACAAATACGTTTTGCTACGTTTTGAATCT----AC 329 consensus_6100#1 ACCAGTGACCGCTTCCACCAGGTGTAAAGATATGTCTAAAGGGGAAGNGTGTG-----AC 344 consensus_6100#2 TTCCGTTGGAGATGCATGAGAGGAACCCGATCGGGTTGGCAATACTGTGTGCCCTTGTAC 311 * * * * * ** * * * ** consensus_6100#0 GGTTGACGATGACGATGAGGTGTAAACCCCCTGACTGATATAGCGTTAGTAAAGGCGGAA 389 consensus_6100#1 ACTATTCTTCTGCAATAATATTTAAACTCTATAA---GAAAACCGAGAGAGACCGTGGAA 401 consensus_6100#2 TTTTGTTTGTTACGACTGCAAGTTA--CGACTTATCGCGAAAGAGAGAGTGAGAGCGAGA 369 * * * * * * * * * * ** * * * * consensus_6100#0 GATAGGGAG-AGAGACACTTGGTGAGAAGAACCTATTACAC-ACCCGAATGAGTAAGCGC 447 consensus_6100#1 GGGAAGGAG-GGAGAGA------AACGTGCTTGTATTGTGA-AGTAGGAAAGGCAAATAC 453 consensus_6100#2 GAGTGTGTGTAGAGAGA---GGTTATATTATTATTTTATATTAATTAAATGGGTGATCAT 426 * * * **** * * * ** * * * * consensus_6100#0 GTGTACAGATGCGTCCGTATTTCTTTACTTCATATTGGAGTATGAGTTTTTAGCTGGTAG 507 consensus_6100#1 ATCTTCCACCTCTATCATAACTTTGTATCCTTTATCT---CGTAAGTCTACATATAGTAG 510 consensus_6100#2 CAGCGCAGTAGGCCAGGTGGCGAGTAGTGAGGAAAGCATGCATTTAAAGATATGTAAGAG 486 * * * * * * ** consensus_6100#0 ACTCAAGGTGATAGGGCGAAGAACGG-AGA-----CACGCGTTACACGAGCGTTACACAC 561 consensus_6100#1 TCTAGANGAGACAAAACGGAACGAAG-AAAATCCCCAGACGTAATTCTCACGTCAAGTTC 569 consensus_6100#2 CGTTCAAAGGACAGAGAGAAGCAAGGCAAATTGAGCGCGAGGTGGCGAAGAATCACCACC 546 * * ** * * * * * * * * * * * consensus_6100#0 ACATGTGGGCACGTGCGGCGTTCGGCGTTGCTTGTAGTTACAACACTTCCCTTTCGAACA 621 consensus_6100#1 CCGTGGTNACAAGACAANCGAANAGCGAAAGTAGCNGTTTGTGCCTACGGCTTTTGAGGA 629 consensus_6100#2 ACCCCCCAACAGTGAGAGTGTATAATCTCAGCAAAAA----GGCGTTATTTTTTTAAAAA 602 * ** * * *** * * consensus_6100#0 CGCTCTTTGGCTTGGTTTCATTTTCACTTTCGATATTAATGTTGTTACTAATTGAAAATA 681 consensus_6100#1 AGTCGT---ACCGGGTTTGAAC--GACTGACCGAATTGAGGGTGTTAACACCN----CCN 680 consensus_6100#2 GGATTC---GTTTGTTGTCGTA--GACCACGGTTAATGA--TTAGTACCTAC-------- 647 * * * * ** * * * * ** consensus_6100#0 CAAAATCAAACTATCGTATCAGTTCAGTTTTGTTTACGTGAACGCTGGCAGGTATCATCC 741 consensus_6100#1 CTGGACCGAANNATAGCGTTNAGTAAAGGCGGGACNCGATNTCNCGGGGAGAAG------ 734 consensus_6100#2 ------------------------------------------------------------ consensus_6100#0 GTTAGGGGAGGGATTGTCTTAAATTATATATCTTACGCAAACTGTAGAAGCTGTGGGGAA 801 consensus_6100#1 ------------------------------------------------------------ consensus_6100#2 ------------------------------------------------------------ consensus_6100#0 GAGGATGAGCAGCATAATAGTACATGAGGGGAACACACGGAACGCAACAAGTCTCTATCT 861 consensus_6100#1 ------------------------------------------------------------ consensus_6100#2 ------------------------------------------------------------ consensus_6100#0 ACAGCATAAAGTTAACAAACCGCAAACCCAGGAGCAGAACAGAGACTCATGTAATGGTTC 921 consensus_6100#1 ------------------------------------------------------------ consensus_6100#2 ------------------------------------------------------------ consensus_6100#0 ATTTCGTTTATCACAACCTTTGATTGCTGGTGAACAGTATTAATGAGAATAAAAATATTG 981 consensus_6100#1 ------------------------------------------------------------ consensus_6100#2 ------------------------------------------------------------ consensus_6100#0 CGTCCC 987 consensus_6100#1 ------ consensus_6100#2 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||