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Anopheles gambiae
cluster # 6126 cluster # 6126       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6126#0 length = 1259 sequences # 3  
consensus_6126#1 length = 628 sequences # 2  

consensusID : consensus_6126#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1259
fasta sequence
                              [ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTCCGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACACAACAGTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACCATCCGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTTAGTGAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGAAACGAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGATCCACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCGCTTCATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCTGCTCCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCTGC]

[+] EMBL BX629278             [ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTCCGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX629171             [           GTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTCCGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM584019             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cCGAGCGAACGGGCGTTCCAGGACCATGCGACCGAGTTCCGCACACGGCACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCTTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCGCCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTCGCCTGCATTGCGCTGTGCGAGTACGTGGACAATCCAAATTACGTGAAGAGTCAAGAAGAAACACAACAGTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACCATCCGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTTAGTGAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGAAACGAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGATCCACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCGCTTCATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCTGCTCCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCTGC]


>consensus_6126#0 ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTC CGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGA GATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCAT CCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTT CCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAG CATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGG GCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGC CCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCC GTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAA CTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCA CGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAA CAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGAT GTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCAT TGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACACAACA GTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACCATC CGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTTAGT GAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGAAAC GAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGATCC ACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCGCTT CATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCTGCT CCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCTGC



consensusID : consensus_6126#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence
                              [GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACGAGTTCCGCACACGGACACGCATTTCACGGCAGTCGGCTGGTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACCAAGTGTCGTGTTCGGGAGGGCCATCTATCTGTCGGCGGAA]

[+] EMBL AL934598             [GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACGAGTTCCGCACACGGACACGCATTTCACGGCAGTCGGCTGGTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACCAAGTGTCGTGTTCGGGAGGGCCATCTATCTGTCGGCGGAA]
[+] EMBL BM606182             [                   TACACTAAACACCATACCCCGCATCCAGATGGAACCGGCTCCATTGTCCCTCTAAGACAAACGGGTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_6126#1 GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTC CATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAG CGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCT GCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGT GTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCG ACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGC GAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAAT ACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGA CCTTCCAGGACCATGCGACGAGTTCCGCACACGGACACGCATTTCACGGCAGTCGGCTGG TTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACCAAGTGTCGTGTT CGGGAGGGCCATCTATCTGTCGGCGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6126#0      ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTC 60
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      CGCATTTAGTCTGCCCGTTTTGGTGTGGTG--AAATACACAAAACACCATACCCCGCATC 118
consensus_6126#1      ----------------GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATC 44
                                      *  * **   *  *  ****************************

consensus_6126#0      GAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATC 178
consensus_6126#1      GAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATC 104
                      ************************************************************

consensus_6126#0      ATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCG 238
consensus_6126#1      ATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCG 164
                      ************************************************************

consensus_6126#0      TTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAA 298
consensus_6126#1      TTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAA 224
                      ************************************************************

consensus_6126#0      AGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCA 358
consensus_6126#1      AGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCA 284
                      ************************************************************

consensus_6126#0      GGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAG 418
consensus_6126#1      GGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAG 344
                      ************************************************************

consensus_6126#0      GCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGT 478
consensus_6126#1      GCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGT 404
                      ************************************************************

consensus_6126#0      CCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACC 538
consensus_6126#1      CCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACC 464
                      ************************************************************

consensus_6126#0      AACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACG-ACACGCATT 597
consensus_6126#1      AACTCGAGCGAACGGACCTTCCAGGACCATGCGAC-GAGTTCCGCACACGGACACGCATT 523
                      *********************************** ************** *********

consensus_6126#0      TCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCT 657
consensus_6126#1      TCACGGCAGTCGGCTGGTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCT 583
                      **************** *******************************************

consensus_6126#0      GAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCA 717
consensus_6126#1      GAACCAAGTGTCGT-GTTCGGGAGGGCCATCTATCTGTCGGCGGAA-------------- 628
                      **** * ******* *******  ** *******************              

consensus_6126#0      GATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTG 777
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      CATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACACA 837
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      ACAGTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACC 897
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      ATCCGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTT 957
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      AGTGAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGA 1017
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      AACGAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGA 1077
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      TCCACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCG 1137
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      CTTCATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCT 1197
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      GCTCCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCT 1257
consensus_6126#1      ------------------------------------------------------------
                                                                                  

consensus_6126#0      GC 1259
consensus_6126#1      --
                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)