These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1259 fasta sequence [ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTCCGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACACAACAGTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACCATCCGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTTAGTGAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGAAACGAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGATCCACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCGCTTCATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCTGCTCCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCTGC] [+] EMBL BX629278 [ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTCCGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACA ] [+] EMBL BX629171 [ GTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTCCGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACA ] [+] EMBL BM584019 [ cCGAGCGAACGGGCGTTCCAGGACCATGCGACCGAGTTCCGCACACGGCACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCTTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCGCCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTCGCCTGCATTGCGCTGTGCGAGTACGTGGACAATCCAAATTACGTGAAGAGTCAAGAAGAAACACAACAGTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACCATCCGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTTAGTGAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGAAACGAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGATCCACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCGCTTCATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCTGCTCCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCTGC] consensusID : consensus_6126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence [GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACGAGTTCCGCACACGGACACGCATTTCACGGCAGTCGGCTGGTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACCAAGTGTCGTGTTCGGGAGGGCCATCTATCTGTCGGCGGAA] [+] EMBL AL934598 [GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACGAGTTCCGCACACGGACACGCATTTCACGGCAGTCGGCTGGTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACCAAGTGTCGTGTTCGGGAGGGCCATCTATCTGTCGGCGGAA] [+] EMBL BM606182 [ TACACTAAACACCATACCCCGCATCCAGATGGAACCGGCTCCATTGTCCCTCTAAGACAAACGGGTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6126#0 ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTC 60 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 CGCATTTAGTCTGCCCGTTTTGGTGTGGTG--AAATACACAAAACACCATACCCCGCATC 118 consensus_6126#1 ----------------GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATC 44 * * ** * * **************************** consensus_6126#0 GAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATC 178 consensus_6126#1 GAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATC 104 ************************************************************ consensus_6126#0 ATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCG 238 consensus_6126#1 ATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCG 164 ************************************************************ consensus_6126#0 TTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAA 298 consensus_6126#1 TTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAA 224 ************************************************************ consensus_6126#0 AGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCA 358 consensus_6126#1 AGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCA 284 ************************************************************ consensus_6126#0 GGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAG 418 consensus_6126#1 GGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAG 344 ************************************************************ consensus_6126#0 GCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGT 478 consensus_6126#1 GCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGT 404 ************************************************************ consensus_6126#0 CCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACC 538 consensus_6126#1 CCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACC 464 ************************************************************ consensus_6126#0 AACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACG-ACACGCATT 597 consensus_6126#1 AACTCGAGCGAACGGACCTTCCAGGACCATGCGAC-GAGTTCCGCACACGGACACGCATT 523 *********************************** ************** ********* consensus_6126#0 TCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCT 657 consensus_6126#1 TCACGGCAGTCGGCTGGTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCT 583 **************** ******************************************* consensus_6126#0 GAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCA 717 consensus_6126#1 GAACCAAGTGTCGT-GTTCGGGAGGGCCATCTATCTGTCGGCGGAA-------------- 628 **** * ******* ******* ** ******************* consensus_6126#0 GATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTG 777 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 CATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACACA 837 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 ACAGTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACC 897 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 ATCCGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTT 957 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 AGTGAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGA 1017 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 AACGAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGA 1077 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 TCCACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCG 1137 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 CTTCATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCT 1197 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 GCTCCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCT 1257 consensus_6126#1 ------------------------------------------------------------ consensus_6126#0 GC 1259 consensus_6126#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||