These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 769 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGGATCGGAGATTTTTGCGATTTACCCCTTTGTTTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGGACA--AGTGAGTGTGTGGTGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAACCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGAT-GTACAACCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGGTACGATGGATCTATCACACGCTCGAGTCGTTCTACCGGCTGGTGGTGCCGCCGGCCGCCGACACCGTCCACACCGATATCGTGCTGATTACCGGTGCCGGGCACGGGCATGGGCCGCTGCATGGGCGCTGCAGTACGCGCAGCTCGGCGCCACCGTCGTCTGCGTCGACATCAACGAGAAGATGAACGCGGACACGGTCGCCACCAT] [+] EMBL BM615215 [CCGCCCACGCGTCCGCCCACGCGTCCGCGGATCGGAGATTTTTGCGATTTACCCCTTTGTTTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGGACA AGTGAGTGTGTGGTGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAACCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGAT GTACAACCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGGTACGATGGATCTATCACACGCTCGAGTCGTTCTACCGGCTGGTGGTGCCGCCGGCCGCCGACACCGTCCACACCGATATCGTGCTGATTACCGGTGCCGGGCACGGGCATGGGCCGCTGCATGGGCGCTGCAGTACGCGCAGCTCGGC ] [+] EMBL BM657620 [ ccggaCGGATCGGAGATTTTTGCGATTTACCCCTTTGTTTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGGACA AGTGAGTGTGTGGTGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAACCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGAT GTACAACCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGG ] [+] EMBL BX602699 [ CCCTTTGGTTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGAACA AGTGAGTGTGTGGCGTGTCTCCCTGCGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAATCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGAT GTACAACCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGGTACGATGGAT ] [+] EMBL AGA283144 [ CTCCCAATTCCCTCAGTCCCTGCTCCACGTGTGTCTCATTCGAGGGAC TGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGAACAAGAGTGTGTGTGTGGCGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGATCTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAATCCGACAACACACCGTTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGACGACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCAAACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGCGACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGATGGTACAATCTGGTGATCCTCATCATCGACATTGTCGCCATGTTGGTACGATGGATCTATCACACGCTCGAGTCGTTCTACCGGCTGGTGGTGCCGCCGGCCGCCGACACCGTCCACACCGATATCGTGCTGATTACCGGTGCCGGGCAC GGCATGGGCCGCTGCAT GGCGCTGCAGTACGCGCAGCTCGGCGCCACCGTCGTCTGCGTCGACATCAACGAGAAGATGAACGCGGACACGGTCGCCACCAT] consensusID : consensus_6127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [GGCAACGAATCGGCCACGAGGTNNATCTATCACACGCTCGAGTNGCTTCTACCGGGCTGGTGGTGCCGCCGGCCGCCGACACCGTTCACACCGATATNGTGCTGATTACCGGGTGCCGGGCACGGCAATGGTGCCGCTGGCATGGCGCCTGCAGTACGCGCAGACGTCGGCGCCACCGGTACGTCTGCGTCGACAATCAAACGAGAAGAGTGAAACGGCGGACACGAGTCGTGCACCATTCGGCAGG] [+] EMBL BX469583 [GGCAACGAATCGGCCACGAGGTNNATCTATCACACGCTCGAGTNGCTTCTACCGGGCTGGTGGTGCCGCCGGCCGCCGACACCGTTCACACCGATATNGTGCTGATTACCGGGTGCCGGGCACGGCAATGGTGCCGCTGGCATGGCGCCTGCAGTACGCGCAGACGTCGGCGCCACCGGTACGTCTGCGTCGACAATCAAACGAGAAGAGTGAAACGGCGGACACGAGTCGTGCACCATTCGGCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6127#0 CCGCCCACGCGTCCGCCCACGCGTCCGCGGATCGGAGATTTTTGCGATTTACCCCTTTGT 60 consensus_6127#1 ------------------------------------------------------------ consensus_6127#0 TTTTGTTTTGCTTTGGCCAGAGGTTTTCCACTCCCAATTCCCTCAGTCCCTGCTCCACGT 120 consensus_6127#1 ------------------------------------------------------------ consensus_6127#0 GTGTCTCATTCGAGGGACTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTCGGGACAAGTG 180 consensus_6127#1 ------------------------------------------------------------ consensus_6127#0 AGTGTGTGGTGTGTCTCCCTGAGGACGACCCTTTGAATCCGACCCGTTTTCCGGTGTGAT 240 consensus_6127#1 ------------------------------------------------------------ consensus_6127#0 CTTCGCTGCGCTCCACTATAAACCATCCTCCACAGCAACCTATAACCCGACAACACACCG 300 consensus_6127#1 ------------------------------------------------------------ consensus_6127#0 TTGGCTGGTCTTGCAGAAATACTGCCCCTCCGCACCATCACCATGAACATGCTCCAGGAC 360 consensus_6127#1 ------------------------------------------------------------ consensus_6127#0 GACAACATCGACAATGCAATCTCCGTGTTTCGGAGCGACAGGCAGTTCATCGATAATTCA 420 consensus_6127#1 ------------------------------------------------------------ consensus_6127#0 AACTCCGGCATACCGCCCCGCCCGCCAAGAAGCAGCCCCGAAGACACCAGCCCCGCCAGC 480 consensus_6127#1 ------------------------------------------------------------ consensus_6127#0 GACCGTCAAACCGCAGCACCGAACGCGGGCGTCAAGATGTACAACCTGGTGATCCTCATC 540 consensus_6127#1 ------------------------------------------------------------ consensus_6127#0 ATCGACATTGTCGCCATGTTGGTACGATGGATCTATCACACGCTCGAGTCG-TTCTACCG 599 consensus_6127#1 ------GGCAACGAATCGGCCACGAGGTNNATCTATCACACGCTCGAGTNGCTTCTACCG 54 ** * * * ******************* * ******** consensus_6127#0 G-CTGGTGGTGCCGCCGGCCGCCGACACCGTCCACACCGATATCGTGCTGATTACCGG-T 657 consensus_6127#1 GGCTGGTGGTGCCGCCGGCCGCCGACACCGTTCACACCGATATNGTGCTGATTACCGGGT 114 * ***************************** *********** ************** * consensus_6127#0 GCCGGGCACGGGCATGG-GCCGCTG-CATGGGCGCTGCAGTACGCGCAGC--TCGGCGCC 713 consensus_6127#1 GCCGGGCACGGCAATGGTGCCGCTGGCATGGCGCCTGCAGTACGCGCAGACGTCGGCGCC 174 *********** **** ******* ***** *************** ******** consensus_6127#0 ACCGT--CGTCTGCGTCGACATC--AACGAGAAGA-TGAAC--GCGGACACG-GTCGC-C 764 consensus_6127#1 ACCGGTACGTCTGCGTCGACAATCAAACGAGAAGAGTGAAACGGCGGACACGAGTCGTGC 234 **** ************** ********** **** ********* **** * consensus_6127#0 ACCAT-------- 769 consensus_6127#1 ACCATTCGGCAGG 247 ***** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||