These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1092 fasta sequence [CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACTGGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTATCGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTACAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAGCGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTGGTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAA-AGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAAC-AAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTT-TTAA-GATGCTATAGATACCA-GCAATGCGTAACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCGGGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGATAAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANT-CNNCNGCGACACNAAAAACTTCCACN] [+] EMBL BM623981 [CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACTGGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTATCGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTACAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAGCGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTGGTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGA ] [+] EMBL BM631833 [ ccgGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAGCGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTGGTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAG AAATCAAGAAGAAGTAAA AGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAAC AAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTT TTAA GATGCTATAGATACCA GCAATGCGTAAC ] [+] EMBL CF542083 [ CGAGCGACAGAAAACTACAGCTCCACAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTT AAAAATGAACGATGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATATGTAAGAAGAAAAGCAAGAAGAAGTAAAGAGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTTATTAANGATGCTATANATACCANGCGATGCGTAACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCGGGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGATAAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANT CNNCNGCGACACNAAAAACTTCCACN] [+] EMBL BM640421 [ ccgCCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAA AGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAAC AAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTT TTAA GATGCTATAGATACCA GCAATGCGTAATGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTTAGTAGTGTGAGCGTTTCTGCGGGAAAGAAGGAGTTTCGTGGTCGTTCGGTAGACATGAATCGAAAGCGGAAATGGACGGAT AAGAAAAGGAGTGGTTTAAAAACGCAGAAGATAAGCATTAATAATACAACTGCGACACgaga ] consensusID : consensus_6135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGCGGACGCGTGGGTGGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTAACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGCGGGAAAG] [+] EMBL BM597161 [CCGCGGACGCGTGGGTGGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTAACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGCGGGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6135#0 CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACT 60 consensus_6135#1 ------------------------------------------------------------ consensus_6135#0 GGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTAT 120 consensus_6135#1 ------------------------------------------------------------ consensus_6135#0 CGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTA 180 consensus_6135#1 ------------------------------------------------------------ consensus_6135#0 CAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAG 240 consensus_6135#1 ------------------------------------------------------------ consensus_6135#0 CGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTG 300 consensus_6135#1 -------------------------------------------------------CCGCG 5 *** * consensus_6135#0 GTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGT 360 consensus_6135#1 GACGC-GTGGGT---GGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAGT 61 * * **** * *************************** ***************** consensus_6135#0 CGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCAT 420 consensus_6135#1 CGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCAT 121 **************************** ** **************************** consensus_6135#0 GTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCT 480 consensus_6135#1 GTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTCT 181 ************************ ******************* *************** consensus_6135#0 TCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGAT 540 consensus_6135#1 TCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGAT 241 ************************************* ********************** consensus_6135#0 GGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAAT 600 consensus_6135#1 GGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAAT 301 ************************************************************ consensus_6135#0 GTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAA 660 consensus_6135#1 GTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAA 361 ********** ************************************************* consensus_6135#0 AAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGA 720 consensus_6135#1 AAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGA 421 ************************************************************ consensus_6135#0 GATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAA 780 consensus_6135#1 GATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAA 481 ************************************************************ consensus_6135#0 ATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATG 840 consensus_6135#1 ATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATG 541 ************************************************************ consensus_6135#0 GCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTA 900 consensus_6135#1 GCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTA 601 ************************************************************ consensus_6135#0 ACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCG 960 consensus_6135#1 ACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGCG 661 *************** ********************* ********************* consensus_6135#0 GGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGAT 1020 consensus_6135#1 GGAAAG------------------------------------------------------ 667 ****** consensus_6135#0 AAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANTCNNCNGCGACACNA 1080 consensus_6135#1 ------------------------------------------------------------ consensus_6135#0 AAAACTTCCACN 1092 consensus_6135#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||