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Anopheles gambiae
cluster # 6135 cluster # 6135       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6135#0 length = 1092 sequences # 4  
consensus_6135#1 length = 667 sequences # 1  

consensusID : consensus_6135#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1092
fasta sequence
                              [CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACTGGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTATCGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTACAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAGCGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTGGTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAA-AGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAAC-AAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTT-TTAA-GATGCTATAGATACCA-GCAATGCGTAACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCGGGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGATAAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANT-CNNCNGCGACACNAAAAACTTCCACN]

[+] EMBL BM623981             [CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACTGGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTATCGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTACAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAGCGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTGGTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM631833             [                                                                                                                                                                                           ccgGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAGCGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTGGTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAG AAATCAAGAAGAAGTAAA AGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAAC AAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTT TTAA GATGCTATAGATACCA GCAATGCGTAAC                                                                                                                                                                                               ]
[+] EMBL CF542083             [                                                                                                                                                                                                                                                                                                                                                                                CGAGCGACAGAAAACTACAGCTCCACAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTT AAAAATGAACGATGAAATGTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATATGTAAGAAGAAAAGCAAGAAGAAGTAAAGAGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTTATTAANGATGCTATANATACCANGCGATGCGTAACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCGGGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGATAAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANT CNNCNGCGACACNAAAAACTTCCACN]
[+] EMBL BM640421             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgCCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAA AGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAAC AAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTT TTAA GATGCTATAGATACCA GCAATGCGTAATGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTTAGTAGTGTGAGCGTTTCTGCGGGAAAGAAGGAGTTTCGTGGTCGTTCGGTAGACATGAATCGAAAGCGGAAATGGACGGAT AAGAAAAGGAGTGGTTTAAAAACGCAGAAGATAAGCATTAATAATACAACTGCGACACgaga          ]


>consensus_6135#0 CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACT GGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTAT CGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTA CAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAG CGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTG GTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGT CGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCAT GTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCT TCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGAT GGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAAT GTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAA AAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGA GATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAA ATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATG GCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTA ACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCG GGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGAT AAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANTCNNCNGCGACACNA AAAACTTCCACN



consensusID : consensus_6135#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence
                              [CCGCGGACGCGTGGGTGGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTAACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGCGGGAAAG]

[+] EMBL BM597161             [CCGCGGACGCGTGGGTGGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAGTCGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCATGTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTCTTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGATGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAATGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAAAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGAGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAAATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATGGCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTAACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGCGGGAAAG]


>consensus_6135#1 CCGCGGACGCGTGGGTGGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAG TCGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCA TGTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTC TTCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGA TGGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAA TGTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGA AAAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAG AGATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAA AATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACAT GGCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGT AACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGC GGGAAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6135#0      CCGGCATCACGTGGTGAATGCATTCAAGTGTGCGATTGATGGACACTATGATGTATGACT 60
consensus_6135#1      ------------------------------------------------------------
                                                                                  

consensus_6135#0      GGTCTGGGTGAGTGTTCGCTCAATTTTGGATATGTTTCATCCTACTCTTTCTCTCCTTAT 120
consensus_6135#1      ------------------------------------------------------------
                                                                                  

consensus_6135#0      CGGCGAGGCAGAGTAAAGCTGTTGTAATTAATACAACAACAACAACAACAACAAAAACTA 180
consensus_6135#1      ------------------------------------------------------------
                                                                                  

consensus_6135#0      CAAAATGTACGAAATGCGAAGGCCACAGGATCTCATAAACGGTTTGCCGAAGCGTTACAG 240
consensus_6135#1      ------------------------------------------------------------
                                                                                  

consensus_6135#0      CGTCTATGGGAAAAGCGTCACTTAGAGAAAGGAGTCGTTCGACCTTTTAGCGCTTCCGTG 300
consensus_6135#1      -------------------------------------------------------CCGCG 5
                                                                             *** *

consensus_6135#0      GTTGTTGTGGATGTTGGAACTATCGGGGATTCGGGAAGGATAAGAAAAACTGAGCACAGT 360
consensus_6135#1      GACGC-GTGGGT---GGAACTATCGGGGATTCGGGAAGGATACGAAAAACTGAGCACAGT 61
                      *  *  **** *   *************************** *****************

consensus_6135#0      CGCCAACACGAGCGACAGAAAACTACAGCTCCATAGATATACATATATTTTGGATTGCAT 420
consensus_6135#1      CGCCAACACGAGCGACAGAAAACTACAGATCAATAGATATACATATATTTTGGATTGCAT 121
                      **************************** ** ****************************

consensus_6135#0      GTTTGTTGAGGAAGCGCTAGGCTTCATTTATTTACCGGAGCGTCTAGCAACCTTCCCTCT 480
consensus_6135#1      GTTTGTTGAGGAAGCGCTAGGCTTAATTTATTTACCGGAGCGTCCAGCAACCTTCCCTCT 181
                      ************************ ******************* ***************

consensus_6135#0      TCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTGTGGATGGAGATGTACATGGGAT 540
consensus_6135#1      TCTACCGGGACATAGAGGGAACGTGGGGTGGGTAGCTATGGATGGAGATGTACATGGGAT 241
                      ************************************* **********************

consensus_6135#0      GGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAAT 600
consensus_6135#1      GGTGTAGCAAAAATGGTGTAGATGGTGAAACAGAGAAGCTTAAAAAATGAACGGTGAAAT 301
                      ************************************************************

consensus_6135#0      GTGAAAAAGTAGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAA 660
consensus_6135#1      GTGAAAAAGTTGTTATGCAAAGTTGGCGAAAGAACATATGAGAAACGAGGAAATGGAGAA 361
                      ********** *************************************************

consensus_6135#0      AAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGA 720
consensus_6135#1      AAGGAAGATGAATAAGAAGCAGAAGAAGCAGAAGAAGAGAAGATGAGATGTCATAAGAGA 421
                      ************************************************************

consensus_6135#0      GATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAA 780
consensus_6135#1      GATAATAAAAGTAACAGATGATGTGTAAGAAGAAAAGCAAGAAGAAGTAAAAGAAGAAAA 481
                      ************************************************************

consensus_6135#0      ATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATG 840
consensus_6135#1      ATGTAGAAGAAGAACATCAGGATGAGAAACAAAACAAAAAAATCTAATTACTGAGACATG 541
                      ************************************************************

consensus_6135#0      GCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTA 900
consensus_6135#1      GCTGTGTTTATTCCTCCTCACAATTTGTTTTTAAGATGCTATAGATACCAGCAATGCGTA 601
                      ************************************************************

consensus_6135#0      ACGAATGTTGAACGGGAAACGAGAGTGAAATTCTGGCATAGTAGTGTGAGCGTTTCTGCG 960
consensus_6135#1      ACGAATGTTGAACGGAAAACGAGAGTGAAATTCTGGCTAAGTAGTGTGAGCGTTTCTGCG 661
                      *************** *********************  *********************

consensus_6135#0      GGAAAGAANGAGTNNCGTGGTCGTTCNGTAAACATGACTCNAAAGCGGANGTGGACGGAT 1020
consensus_6135#1      GGAAAG------------------------------------------------------ 667
                      ******                                                      

consensus_6135#0      AAAAAAAAGGAGTGGTTTANAAACNCNAAAGATANGCATNAATANTCNNCNGCGACACNA 1080
consensus_6135#1      ------------------------------------------------------------
                                                                                  

consensus_6135#0      AAAACTTCCACN 1092
consensus_6135#1      ------------
                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)