These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1038 fasta sequence [CATACGTACACATCACCTACAAATAGCGTGTTCCACACTTGACCAGCTTATCATAGGGGCGAAAAAGAGCGGAATTGTGAANAGGGAGGGTGTGTGTCATA-GCGCATGGCAAAAACGGCTACAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAAAAAAAGTATAAATATATATATGACTACATCTCAAAGCAAA-AGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAA-ACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTAATGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTT----TCTCTCTCTCTCTCTGTCTTGGAAGGCTCACGAAAGGCCCGAACCTTTCCCTCCCAAAACGACTAAAAACGTTCGACCAC-TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGATCCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAACCAGGATGTCTTATAAGAAAATTCAAATTCCAATCCTACAACACATATACCATCAGCCTTCCTTTCTAATCGTAATTTCTCTACTCGTAAACGTAAACAT-GGATTCTAAAATCAAAACTAAAAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTACTAAGCGAG-AAACATACACGAACACTCACACACACATACAAAAGCAAACAAATACGATGATGATATTGCTAGATAATCCGGATTGAAATGGGAATGATAGAGCAGC-AAAACCAGT-ATACGACCAAAACCACCCCTAT-AAATGGGTACCCGGAAGGAA-TTAAAAAGATGCAACAGCCCCGGGGACGGGTCCCCTCGAGGCACTAGCTTTAGAAGAGAATATGCAATCAGGTTGCAA] [+] EMBL AL934501 [CATACGTACACATCACCTACAAATAGCGTGTTCCACACTTGACCAGCTTATCATAGGGGCGAAAAAGAGCGGAATTGTGAANAGGGAGGGTGTGTGTCATA GCGCATGGCAAAAACGGCTACAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAAAAAAAGTATAAATATATATATGACTACATCTCAAAGCAAACAGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAACACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTAATGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTT TCTCTCTCTCTCTCTGTCTTGGAAGGCTCACGAAAGGCCCGAACCTTTCCCTCCCAAAACGACTAAAAACG TCGACCACGTCTTCATTACTCGTTTACGCTTGCCACTTCTTAGAT ] [+] EMBL BX621712 [ GTGAAGAGGGAGGGTGTGTGTCATAGGCGCATGGCAAAAACGGCTACAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAAAAAAAGTATAAATATATATATGACTACATCTCAAAGCAAA AGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAA ACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTAATGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTT TCTCTCTCTCTCTCTGTCTTGGAAGGCTCACGAAAGGCCCGAACCTTTCCCTCCCAAAACGACTAAAAACGTTCGACCAC TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGATCCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAACCAGGATGTCTTATAAGAAAATTCAAATTCCAATCCTACAACAC ATACCCTCAGCCTTCCTTTCTAATCGTAATTTCTCTACTCGTAAACGTAAACAT GGATTCTAAAATCAAAACTAAAAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTAC ] [+] EMBL BM657834 [ ccgAACAAAGCAAAAAGAAAATCCATGAACATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTAATGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTTTCTCTCTCTCTCTCTCTCTGTCTTGGAAGGCTCACGAAAGGCCCGAACATTTCCCTCCCAAAACGACTAAAAACGTTCGACCAC TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGATCCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAACCAGGATGTCTTATAAGAAAATTAAAATTCCAATCCTACAACACATATACCATCAGCCTTCCTTTCTAATCGTAATTTCTCTACTCGTAAACGTAAACATGGGATTCTAAAATCAAAACTAAAAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTACTAAGCGAG AAACATACACGAACACTCACACACACATACAAAAGCAAACAAATACGATGATGATATTGCTAGATAATCCGGATTGAAATGGGAATGATAGAGCAGC AAAACCAGT ATACGACCAAAACCACCCCTAT AAATGGGTACCCGGAAGGAA TTAAAAAGATGCAACAGCCCCGG ] [+] EMBL BM604561 [ ccgCGTTCGACCAC TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGATCCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAACCAGGATGTCTTATAAGAAAATTCAAATTCCAATCCTACAACACATATACCATCAGCCTTCCTTTCTAATCGTAATTTTTCTACTCGTAAACGTAAACAT GGATTCTAAAATCAAAACTAAAAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTACTAAGCGAGAAAACACAAACAAACACTCACACACACATAC AAAGCAAACAAATACGATGATGATATTGTTAGATAAT CGGATTGAAATGGTAATGATAGAGCAGCAAAAACAAGTAATACAACAAAAACAAACCCTATAAAATGTGTACACGGAAGGAATTTAGATAGATGCAACAGCCCGGGGGACGGGTCCCCTCGAGGCACTAGCTTTAGAAGAGAATATGCAATCAGGTTGCAA] consensusID : consensus_6139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGCAAGAACGAAGACACAACGGTATACGTTTTTCGTTTGACTTTCTAAGTAACTGTTTCGGAGTTGAACAAAGGTTTTTTTTTTGTTTTCTTCCTTAATTTTTAAGGTACGTTTCTACTCCTCTCCGACTATTTGCACTTTATGACCGATTTTGCGGTGTCTCGAAGCACACACACAAACATAAACATAATACATCCACATACGTACACATCACTTACAAATAGCGTGTTCCACACTTGACCAGTTATCATAGGGGCGAAAAAGAGGGAATTGTGAAGAGGGAGGGTGTGTGTAATAGGCGCATGGCAAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAACAAAAAAAAGTATAAATATATATATGAATACATCTCAAAGCAAAAGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTATATAGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGGCACTTTCTCTCTCTCTCTCTGTCTTGG] [+] EMBL BM652802 [CCGCAAGAACGAAGACACAACGGTATACGTTTTTCGTTTGACTTTCTAAGTAACTGTTTCGGAGTTGAACAAAGGTTTTTTTTTTGTTTTCTTCCTTAATTTTTAAGGTACGTTTCTACTCCTCTCCGACTATTTGCACTTTATGACCGATTTTGCGGTGTCTCGAAGCACACACACAAACATAAACATAATACATCCACATACGTACACATCACTTACAAATAGCGTGTTCCACACTTGACCAGTTATCATAGGGGCGAAAAAGAGGGAATTGTGAAGAGGGAGGGTGTGTGTAATAGGCGCATGGCAAAAAGGGCATATTCTAATCACGTGCATGAACGTTATACATACAAACAAAAAAAAGTATAAATATATATATGAATACATCTCAAAGCAAAAGCAGGACGAAAAATTCAAAACTACCCCCAAACAAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAAATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGCGAAAAGGGCGGGATACAGATACGCGAACAGATAACTATATAGGTTCCACAAACCTATTCCTATTTCTCTACACCATTCTCTCACTCACTTTCTGGCACTTTCTCTCTCTCTCTCTGTCTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6139#0 ------------------------------------------------------------ consensus_6139#1 CCGCAAGAACGAAGACACAACGGTATACGTTTTTCGTTTGACTTTCTAAGTAACTGTTTC 60 consensus_6139#0 ------------------------------------------------------------ consensus_6139#1 GGAGTTGAACAAAGGTTTTTTTTTTGTTTTCTTCCTTAATTTTTAAGGTACGTTTCTACT 120 consensus_6139#0 ------------------------------------------------------------ consensus_6139#1 CCTCTCCGACTATTTGCACTTTATGACCGATTTTGCGGTGTCTCGAAGCACACACACAAA 180 consensus_6139#0 -------------------CATACGTACACATCACCTACAAATAGCGTGTTCCACACTTG 41 consensus_6139#1 CATAAACATAATACATCCACATACGTACACATCACTTACAAATAGCGTGTTCCACACTTG 240 **************** ************************ consensus_6139#0 ACCAGCTTATCATAGGGGCGAAAAAGAGCGGAATTGTGAANAGGGAGGGTGTGTGTCATA 101 consensus_6139#1 ACCAG-TTATCATAGGGGCGAAAAAGAG-GGAATTGTGAAGAGGGAGGGTGTGTGTAATA 298 ***** ********************** *********** *************** *** consensus_6139#0 G-CGCATGGCAAAAACGGCTACAAAAGGGCATATTCTAATCACGTGCATGAACGTTATAC 160 consensus_6139#1 GGCGCATGGCAAAAA-----------GGGCATATTCTAATCACGTGCATGAACGTTATAC 347 * ************* ********************************** consensus_6139#0 ATACAAA----AAAAAGTATAAATATATATATGACTACATCTCAAAGCAAAAGCAGGACG 216 consensus_6139#1 ATACAAACAAAAAAAAGTATAAATATATATATGAATACATCTCAAAGCAAAAGCAGGACG 407 ******* *********************** ************************* consensus_6139#0 AAAAATTCAAAACTACCCCCAAACAAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAA 276 consensus_6139#1 AAAAATTCAAAACTACCCCCAAACAAGCTAAACAAACGAAACAAACAAAGCAAAAAGAAA 467 ************************************************************ consensus_6139#0 ATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGC 336 consensus_6139#1 ATCCATGAAAATATATATATTCTACCAAATCGATAAATGTAAATAATCAAACCGTCTCGC 527 ************************************************************ consensus_6139#0 GAAAAGGGCGGGATACAGATACGCGAACAGATAACTA-AT-GGTTCCACAAACCTATTCC 394 consensus_6139#1 GAAAAGGGCGGGATACAGATACGCGAACAGATAACTATATAGGTTCCACAAACCTATTCC 587 ************************************* ** ******************* consensus_6139#0 TATTTCTCTACACCATTCTCTCACTCACTTTCTGTCACTTTCTCTCTCTCTCTCTGTCTT 454 consensus_6139#1 TATTTCTCTACACCATTCTCTCACTCACTTTCTGGCACTTTCTCTCTCTCTCTCTGTCTT 647 ********************************** ************************* consensus_6139#0 GGAAGGCTCACGAAAGGCCCGAACCTTTCCCTCCCAAAACGACTAAAAACGTTCGACCAC 514 consensus_6139#1 GG---------------------------------------------------------- 649 ** consensus_6139#0 TCTTCATTACTCGTTTACGCTTGCCACTTCTTAGATACGAACGAACGGAGCAGGCGAGAT 574 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 CCCAGCACTGACGGGGAAGATGATGATGATCGTTCATAGTCGCGCACGCAATGTCGTAAC 634 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 CAGGATGTCTTATAAGAAAATTCAAATTCCAATCCTACAACACATATACCATCAGCCTTC 694 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 CTTTCTAATCGTAATTTCTCTACTCGTAAACGTAAACATGGATTCTAAAATCAAAACTAA 754 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 AAACACACTATTTCACACACTCCCTTTTCATCACCCTTTGATCACCTTACTAAGCGAGAA 814 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 ACATACACGAACACTCACACACACATACAAAAGCAAACAAATACGATGATGATATTGCTA 874 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 GATAATCCGGATTGAAATGGGAATGATAGAGCAGCAAAACCAGTATACGACCAAAACCAC 934 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 CCCTATAAATGGGTACCCGGAAGGAATTAAAAAGATGCAACAGCCCCGGGGACGGGTCCC 994 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 CTCGAGGCACTAGCTTTAGAAGAGAATATGCAATCAGGTTGCAA 1038 consensus_6139#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||