These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1019 fasta sequence [AGAATTGCCCCGACGGTTTAACTGATCGCCTTCACTTACCNTCCTTGTAACGTGGTGATGCCGGGCGACTCAACCGTAACCTCCAAACTTGGGCAACACATACTCATCCACTTCAAACACTTTATTGTGTTTCGATCCCAGCACTTCCACGTTGATGGTCCACGCGACCCAGCACCGGGGACGGTCGAGAGGGTTAGCTACCGACTCAAACACACCCTNTCACCAGCTTGCCCTACCTTCCACTGCTTGATGCGGTNTCGCCTTAGCGTCGTNCAAATGTGCACGCTAATGTAGTACCGCCTTCTGGAGGGGTNTNGGTNGTANCGGGTCGAGTACCAGCACACGGAATCGCACCGTAATCGCCCGGCTTGTAGATGGATTAGTNCCGTATTGCACAAATACCGAGAAGCTCTTCTGCTGATACTCCAAATCGGTATATCGTTCATTAAAGGTTAGGCCCGATAACCCTTCGGCGA-CAGCTTGTACGACGACTCGGGAATATCACCAATAGCGAACGGTACCAGCCGCGTTTCACCGGTGTTCAGCGTAATCTCCTGTTTGGCGATCACGCTGCTTGCATCCGTAATGGCAAGGCTGAAACGGATCGG--TTCGCTCACATCCTGGTTCGTTACCGCTACATGGTGCTCGGAGTTGGGCCGAAGCAGCTTCGCACCCACGATCGA-GTAGTGGCCCTCA-CACTGCACCGCTGGTACAAGCGCTACACTCAGCACCAGACACACTGCCAGCAGCGACGAAGACGATGTCGACAGGATCCGGATCGCCGGGTCCTTCTTCGATGCGAACATCGTTGAACGTCGCATAACGCTATGCGACCTTAAGCCTTAGCTTCTCGCGACACAAATCAGGCTTTCCTTTGTGCACTGTGCCAACGGTATTGGGCAAACGAAATCAGTTCTACGAAGCTACTACTGTTAACACACAACAATCACAAGCGCTACAATAGAAAAAATCACTGATGCACAGCGTCACCCCTGGCACCGATCGGTTCGGTAGT-GCGG] [+] EMBL AL693210 [AGAATTGCCCCGACGGTTTAACTGATCGCCTTCACTTACCNTCCTTGTAACGTGGTGATGCCGGGCGACTCAACCGTAACCTCCAAACTTGGGCAACACATACTCATCCACTTCAAACACTTTATTGTGTTTCGATCCCAGCACTTCCACGTTGATGGTCCACGCGACCCAGCACCGGGGACGGTCGAGAGGGTTAGCTACCGACTCAAACACACCCTNTCACCAGCTTGCCCTACCTTCCACTGCTTGATGCGGTNTCGCCTTAGCGTCGTNCAAATGTGCACGCTAATGTAGTACCGCCTTCTGGAGGGGTNTNGGTNGTANCGGGTCGAGTACCAGCACACGGAATCGCACCGTAATCGCCCGGCTTGTAGATGGATTAGTNCCGTATTGCACAAATACCGAGAAGCTCTTCTGCTGATACTCCAAATCGGTATATCGTTCATTAAAGGTTAGGCCCGATAACCCTTCGGCGA CAGCTTGTACGACGACTCGGGAATATCACCAATAGCGAACGGTACCAGCCGCGTTTCACCGGTGTTCAGCGTAATCTCCTGTNTGGCGATCACGCTGCTTGCATCCGTAATGGNAAGGCTGAAACGGATCGGANTNCGCTCACATCCT GTTCGTTAACGCTACATGGTGCTCGGAGTTGGGCCGAAGCAGCTNCGAACCCACGATCGANNTAGTGGCCCTCANCACTGCACCG TGGTACAAGCGCct ] [-] EMBL BM635752 [ CTTGTAGATGGATTTGT CCGT TTGCACAAATACCGAGAAGCTCTTCTGCTGATACTCCAAATCGGT T TCGTTC TTAAAGGTTAGGCCCGATAACCCTTCGGCGACCAGCTTGTACGACGACTCGGGAATATCACCAATAGCGAACGGTACGAGCCGCGTTTCACCGGTGTTCAGCGTAATCTCCTGTTTGGCGATCACGCTGCTTGCATCCGTAATGGCAAGGCTGAAACGGATCGG TTCGCTCACATCCTGGTTAGTTACCGCTACATGGTACTCGGAGTTGGGCCGGAGCAGTTTCGCACCCACGATCGA GTAGTGGCCCTCA CACTGCACCGCTGGTACAAGCACTACACTCAGCACCAGACACACTGCCAGCAGCGACGAAGACGATGTCGACAGGATCCGGATCGCCGGGTCCTTCTTCGATGCGAACATCGTTGAACGTCGCATAACGCTATGCGACCTTAAGCCTTAGCTTCTCGCGACACAAATCAGGCTTTCCTTTGTGCACTGTGCCAACGGTATTGGGCAAACGATATCAGTTCTACGAAGCTACTACTGTTAACACACAACAATCACAAGCGCTACAATAGAAAAAATCACTGATGCACAGCGTCACCCCTGGCACCGATCGGTTCGGTcgg acgc] [-] EMBL BM580443 [ ACTCGGGAATATCACCAATAGCGAACGGTACCAGCCGCGTTTCACCGGTGTTCAGCGTAATCTCCTGTTTGGCGATCACGCTGCTTGCATCCGTAATGGCAAGGCTGAAACGGATCGG TTCGCTCACATCCTGGTTCGTTACCGCTACATGGTGCTCGGAGTTGGGCCGAAGCAGCTTCGCACCCACGATCGA GTAGTGGCCCTCA CACTGCACCGCTGGTACAAGCGCTACACTCAGCACCAGACACACTGCCAGCAGCGACGAAGACGATGTCGACAGGATCCGGATCGCCGGGTCCTTCTTCGATGCGAACGTCGTTGAACGTCGCATAACGCTATGCGACCTTAAGCCTTAGCTTCTCGCGACACAAATCAGGCTTTCCTTTGTGCACTGTGCCAACGGTATTGGGCAAACGAAATCAGTTCTACGAAGCTACTACTGTTAACACACAACAATCACAAGCGCTACAATAGAAAAAATCACTGATGCACAGCGTCACCCCTGGCACCGATCGGTTCGGTAGT GCGG] [-] EMBL BM650551 [ TCGCTCACATCCTGGTTCGTTACCGCTACATGGTACTCGGAGTTAGGCCGGAGCAGTTTCGCACCCACGATCGA GTAGTGGCCCTCA CACTGCACCGCTGGTACAAGCACTACACTCAGCACCAGACACACTGCCAGCAGCGACGAAGACGATGTCGACAGGATCCGGATCGCCGGGTCCTTCTTCGATGCGAACATCGTTGAACGTCGCATAACGCTATGCGACCTTAAGCCTTAGCTTCTCGCGACACAAATCAGGCTTTCCTTTGTGCACTGTGCCAACGGTATTGGGCAAACGAAATCAGTTCTACGAAGCTACTACTGTTAACACACAACAATCACAAGCG AATAGAAAAAGTCACTGATGCACAGCGTCACCCCTGGCACCGATCGGTTCGGTAGTGGCGG] consensusID : consensus_6150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [AGCTCTTCTGCTGATACTCCAAATCGGTTTCGTTCTTAAAGGTTAGGCCCGATAACCCTTCGGCGACCAGCTTGTACGACGACTCGGGAATATCACCAATAGCGAACGGTACGAGCCGCGTTTCACCGGTGTTCAGCGTAATCTCCTGTTTGGCGATCACGCTGCTTGCATCCGTAATGGCAAGGCTGAAACGGATCGGTTCGCTCACATCCTGGTTAGTTACCGCTACATGGTACTCGGAGTTGGGCCGGAGCAGTTTCGCACCCACGATCGAGTAGTGGCCCTCACACTGCACCGCTGGTACAAGCACTACACTCAGCACCAGACACACTGCCAGCAGCGACGAAGACGATGTCGACAGGATCCGGATCGCCGGGTCCTTCTTCGATGCGAACATCGTTGAACGTCGCATAACGCTATGCGACCTTAAGCCTTAGCTTCTCGCGACACAAATCAGGCTTTCCTTTGTGCACTGTGCCAACGGTATTGGGCAAACGATATCAGTTCTACGAAGCTACTACTGTTAACACACAACAATCACAAGCGCTACAATAGAAAAAATCACTGATGCACAGCGTCACCCCTGGCACCGCCCACGCGTCCGCGG] [-] EMBL BM595791 [AGCTCTTCTGCTGATACTCCAAATCGGTTTCGTTCTTAAAGGTTAGGCCCGATAACCCTTCGGCGACCAGCTTGTACGACGACTCGGGAATATCACCAATAGCGAACGGTACGAGCCGCGTTTCACCGGTGTTCAGCGTAATCTCCTGTTTGGCGATCACGCTGCTTGCATCCGTAATGGCAAGGCTGAAACGGATCGGTTCGCTCACATCCTGGTTAGTTACCGCTACATGGTACTCGGAGTTGGGCCGGAGCAGTTTCGCACCCACGATCGAGTAGTGGCCCTCACACTGCACCGCTGGTACAAGCACTACACTCAGCACCAGACACACTGCCAGCAGCGACGAAGACGATGTCGACAGGATCCGGATCGCCGGGTCCTTCTTCGATGCGAACATCGTTGAACGTCGCATAACGCTATGCGACCTTAAGCCTTAGCTTCTCGCGACACAAATCAGGCTTTCCTTTGTGCACTGTGCCAACGGTATTGGGCAAACGATATCAGTTCTACGAAGCTACTACTGTTAACACACAACAATCACAAGCGCTACAATAGAAAAAATCACTGATGCACAGCGTCACCCCTGGCACCGCCCACGCGTCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6150#0 AGAATTGCCCCGACGGTTTAACTGATCGCCTTCACTTACCNTCCTTGTAACGTGGTGATG 60 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 CCGGGCGACTCAACCGTAACCTCCAAACTTGGGCAACACATACTCATCCACTTCAAACAC 120 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 TTTATTGTGTTTCGATCCCAGCACTTCCACGTTGATGGTCCACGCGACCCAGCACCGGGG 180 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 ACGGTCGAGAGGGTTAGCTACCGACTCAAACACACCCTNTCACCAGCTTGCCCTACCTTC 240 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 CACTGCTTGATGCGGTNTCGCCTTAGCGTCGTNCAAATGTGCACGCTAATGTAGTACCGC 300 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 CTTCTGGAGGGGTNTNGGTNGTANCGGGTCGAGTACCAGCACACGGAATCGCACCGTAAT 360 consensus_6150#1 ------------------------------------------------------------ consensus_6150#0 CGCCCGGCTTGTAGATGGATTAGTNCCGTATTGCACAAATACCGAGAAGCTCTTCTGCTG 420 consensus_6150#1 -----------------------------------------------AGCTCTTCTGCTG 13 ************* consensus_6150#0 ATACTCCAAATCGGTATATCGTTCATTAAAGGTTAGGCCCGATAACCCTTCGGCGAC-AG 479 consensus_6150#1 ATACTCCAAATCGGTTT--CGTTC-TTAAAGGTTAGGCCCGATAACCCTTCGGCGACCAG 70 *************** * ***** ******************************** ** consensus_6150#0 CTTGTACGACGACTCGGGAATATCACCAATAGCGAACGGTACCAGCCGCGTTTCACCGGT 539 consensus_6150#1 CTTGTACGACGACTCGGGAATATCACCAATAGCGAACGGTACGAGCCGCGTTTCACCGGT 130 ****************************************** ***************** consensus_6150#0 GTTCAGCGTAATCTCCTGTTTGGCGATCACGCTGCTTGCATCCGTAATGGCAAGGCTGAA 599 consensus_6150#1 GTTCAGCGTAATCTCCTGTTTGGCGATCACGCTGCTTGCATCCGTAATGGCAAGGCTGAA 190 ************************************************************ consensus_6150#0 ACGGATCGGTTCGCTCACATCCTGGTTCGTTACCGCTACATGGTGCTCGGAGTTGGGCCG 659 consensus_6150#1 ACGGATCGGTTCGCTCACATCCTGGTTAGTTACCGCTACATGGTACTCGGAGTTGGGCCG 250 *************************** **************** *************** consensus_6150#0 AAGCAGCTTCGCACCCACGATCGAGTAGTGGCCCTCACACTGCACCGCTGGTACAAGCGC 719 consensus_6150#1 GAGCAGTTTCGCACCCACGATCGAGTAGTGGCCCTCACACTGCACCGCTGGTACAAGCAC 310 ***** *************************************************** * consensus_6150#0 TACACTCAGCACCAGACACACTGCCAGCAGCGACGAAGACGATGTCGACAGGATCCGGAT 779 consensus_6150#1 TACACTCAGCACCAGACACACTGCCAGCAGCGACGAAGACGATGTCGACAGGATCCGGAT 370 ************************************************************ consensus_6150#0 CGCCGGGTCCTTCTTCGATGCGAACATCGTTGAACGTCGCATAACGCTATGCGACCTTAA 839 consensus_6150#1 CGCCGGGTCCTTCTTCGATGCGAACATCGTTGAACGTCGCATAACGCTATGCGACCTTAA 430 ************************************************************ consensus_6150#0 GCCTTAGCTTCTCGCGACACAAATCAGGCTTTCCTTTGTGCACTGTGCCAACGGTATTGG 899 consensus_6150#1 GCCTTAGCTTCTCGCGACACAAATCAGGCTTTCCTTTGTGCACTGTGCCAACGGTATTGG 490 ************************************************************ consensus_6150#0 GCAAACGAAATCAGTTCTACGAAGCTACTACTGTTAACACACAACAATCACAAGCGCTAC 959 consensus_6150#1 GCAAACGATATCAGTTCTACGAAGCTACTACTGTTAACACACAACAATCACAAGCGCTAC 550 ******** *************************************************** consensus_6150#0 AATAGAAAAAATCACTGATGCACAGCGTCACCCCTGGCACCGATCGGTTCGGTAGTGCGG 1019 consensus_6150#1 AATAGAAAAAATCACTGATGCACAGCGTCACCCCTGGCACCGCCCA---CGCGTCCGCGG 607 ****************************************** * ** **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||