These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1441 fasta sequence [AAGAATTCTTNTNGGACGGCCCTCGAGACGGTGCAGCAGATGTTCTCCATTTGGCGCGAGGTATACGAGGTGCAGCTCGCGAACGCTGCCAACGAGCACGACAATGAGAAGCATTCGGACACGAGGAGCGTCATACAGATGCAATCGTCTCAAATGTCTGACAAAGATTCAAATTCAATTCACGCAGCATCGTTGGCGGCATCACGCATTGAGCACGCGCTTAGCGAAGCGGCCCAGCTCTCTTAGCTCGTTCAGTCCCCGACCSGGGCCACAGAAGGCTTGGATGATTCAGTTCAAAATTTGGCTTCTGCTAGCGGACGTATATCTAGCGATTGAACAGCCAAACGAAGCGATCAACTGCATCCAGGAGGCAAGCCTCATCAATCCTGTTTCGCATCAGGTTATGTACATGCGAGGCCAAATTCACATCTTCCAATCCCAATGGAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGGAGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCCCAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGCTGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGCGATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGATTTTACCCTGCTCAAAGCAGCTCACTCAACACCACCAGACCGCGGACACAATTGTTCCGTGGAACGAATGTTCATCACCCGTATCTATTTGACTATTCTTATTGACCGTTGACTAATTTTAGGATCCAGATAATCAAACCAGTGCTATGCTCACGCTCCTCCCCTACCGTTTCCACCCTGGTGTGCGTGCATAATTCATATCAGTTTTAGCAAACCCCTAAAGGTGTCGGTCTATTTTAGAGCAAAAGTATTATGCCACAATGTATGTGTGTCATTATTGGGTAGCGGGATAGTAGAGGTTCACTCCCTTGGGTGCATTTCAACCTTCTAGTTATTAGTGTGATGTTTCGTTACATATGTACGATAATGCACTCAAATCACAATCTCTTCCCACTTCCCCCCAGATAGTTTTGTTTTATCACACTGTGATTGTATCGTTATTCATAAGTTTAAATGTTTTGTTTACAACGGACACGTCTTTGAGACGAGTTATGTATTGTAGAGACCTTTGGTGGTATTCAGTATGCAGACATGTATAAACAGAACTGGTGGTATTTTCTCTTCAACAAGCTCGGGATCATCATCATGATGTATTATCAATTGCAACGTTTAAGGAAATGGAAACCAAATATATACAATAAAGTTCGGACAATGGTTAAATGAAAAAAAAA] [+] EMBL AGA282926 [AAGAATTCTTNTNGGACGGCCCTCGAGACGGTGCAGCAGATGTTCTCCATTTGGCGCGAGGTATACGAGGTGCAGCTCGCGAACGCTGCCAACGAGCACGACAATGAGAAGCATTCGGACACGAGGAGCGTCATACAGATGCAATCGTCTCAAATGTCTGACAAAGATTCAAATTCAATTCACGCAGCATCGTTGGCGGCATCACGCATTGAGCACGCGCTTAGCGAAGCGGCCCAGCTCTCTTAGCTCGTTCAGTCCCCGACCSGGGCCACAGAAGGCTTGGATGATTCAGTTCAAAATTTGGCTTCTGCTAGCGGACGTATATCTAGCGATTGAACAGCCAAACGAAGCGATCAACTGCATCCAGGAGGCAAGCCTCATCAATCCTGTTTCGCATCAGGTTATGTACATGCGAGGCCAAATTCACATCTTCCAATCCCAATGGAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGT ] [+] EMBL BX612587 [ TCACATCTTCCAATCCCAATGGAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGGAGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCCCAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGCTGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGCGATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGATTTTACCCTGCTCAAAGCAGCTCACTCAACACCACCAGACCGCGGACACAATTGTTCCGTGGAACGAATGTTCATCACCCGTATCTATTTGACTATTCTTATTGACCGTTGACTAATTTTAGGATCCAGATAATCAAACCAGTGCTATGCTCACGCTCCTCCCCTACCGTTTCCACCCTGGTGTGCGTGCATAATTCATATCAGTTTTAGCAAACCCCTAAAGGTGTCGGTCTATTTTAGAGCAAAAGTATTATGCCACAATGTATGTGTGTCATTATTGGGTAGCGGGATAGTAGAGGTTCACTCCCTTGGGTGCATTTCAACCTT ] [+] EMBL BX617528 [ CATCACCCGTATCTATTTGACTATTCTTATTGACCGTTGACTAATTTTAGGATCCAGATAATCAAACCAGTGCTATGCTCACGCTCATCTCCTACCGTATTCACTCTGGTGTGCGTGCATAATTCATATCAGTTTTAGCAAACCCCGAAAGGTGTCGGTCTATTTTAGAGCAAAAGTATTATGCCACAATG TCTGTGTCATTATTGGGTAGCGGAATAGTAGAGGTTCACTCCCTTGGATGCATTTCAACCTTCTAGTTATTAGTGTGATGTTTCGTTACATATGTACGATAATGCACTCAAATCACAATCTCTTCCCACTTCCCCCCAGATAGTTTTGTTTTATCACACTGTGATTGTATCGTTATTCATAAGTTTAAATGTTTTGTTTACAACGGACACGTCTTTGAGACGAGTTATGTATTGTAGAGACCTTTGGTGGTATTCAGTATGCAGACATGTATAAACAGAACTGGTGGTATTTTCTCTTCAACAAGCTCGGGATCATCATCATGATGTATTATCAATTGCAACGTTTAAGGAAATGGAAACCAAATATATACAATAAAGTTCG ] [-] EMBL AGA281313 [ CCGTTTCCA CCTGGTGTGCGTGCATAATTCATATCAGTTTTAGCAAACCCCTAAAGGTGTCGGTCTATTTTAGAGCAAAAGTATTATGCCACAATGTATGTGTGTCATTATTGGGTAGCGGGATAGTAGAGGTTCACTCCCTTGGGTGCATTTCAACCTTCTAGTTATTAGTGTGATGTTTCGTTACATATGTAGGATAAGGCACTCCAATCCCAATCTCTTCCCACTTCCCCCCAGATAGTTTTGTTTTATCACACTGTGATTGTATCGTTATTCATAAGTTTAAATGTTTTGTTTACAACGGACACGTCTTAGAGACGATTTATGTATCGTAGAGACCGTTGGTGGTAGTCAGTATGCGGACATGTATAAACAGAACTGGTGTTATTCTCTCTTTAACAAGCTCGGGTTCATCATCACGATGTATTATCAATTGCAACGTTTAAGGAAATGGAAACCAAATATATACAATAAAGTTCGGACAATGGTTAAATGAAAAAAAAA] consensusID : consensus_6153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [AGAATCGCCANGAGNTGAAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGGAGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCCCAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGCTGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGCGATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGCATTTTACCCTGCGTCAAAGCAGGCTCACTCAAGCACCACCAGACCGCG] [+] EMBL BX466172 [AGAATCGCCANGAGNTGAAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTCAGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGGAGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCCCAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGCTGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGCGATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGCATTTTACCCTGCGTCAAAGCAGGCTCACTCAAGCACCACCAGACCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6153#0 AAGAATTCTTNTNGGACGGCCCTCGAGACGGTGCAGCAGATGTTCTCCATTTGGCGCGAG 60 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 GTATACGAGGTGCAGCTCGCGAACGCTGCCAACGAGCACGACAATGAGAAGCATTCGGAC 120 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 ACGAGGAGCGTCATACAGATGCAATCGTCTCAAATGTCTGACAAAGATTCAAATTCAATT 180 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 CACGCAGCATCGTTGGCGGCATCACGCATTGAGCACGCGCTTAGCGAAGCGGCCCAGCTC 240 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 TCTTAGCTCGTTCAGTCCCCGACCSGGGCCACAGAAGGCTTGGATGATTCAGTTCAAAAT 300 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 TTGGCTTCTGCTAGCGGACGTATATCTAGCGATTGAACAGCCAAACGAAGCGATCAACTG 360 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 CATCCAGGAGGCAAGCCTCATCAATCCTGTTTCGCATCAGGTTATGTACATGCGAGGCCA 420 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 AATTCACATCTTCCAATCCCAATGGAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTC 480 consensus_6153#1 -----AGAATCGCCANGA--GNTGAAATGAAGCAAAGCAATGCTTTCTTAACGCCGTCTC 53 * * *** ** *********************************** consensus_6153#0 AGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGG 540 consensus_6153#1 AGCGAACCCGTACCATACGGACGCGTTGCGAGCGCTCGGTGAAGCACACCTAACGCTGGG 113 ************************************************************ consensus_6153#0 AGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCC 600 consensus_6153#1 AGAACCCCGGCTGGCCGAAAAGACGCTGAAGGACGCGGCCAAAATTGATCCAAACTGTCC 173 ************************************************************ consensus_6153#0 CAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGC 660 consensus_6153#1 CAAAATATGGTTCCTGCTGGGACGTGTGATGGAAAGTCTAGGAGATTACACGGCTTCGGC 233 ************************************************************ consensus_6153#0 TGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGC 720 consensus_6153#1 TGATTGCATGGCAACGGCACTACAGCTCGAACCGTACTGCCCGGTGTTGCCATTTAATGC 293 ************************************************************ consensus_6153#0 GATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAG-ATTTTACCCT 779 consensus_6153#1 GATCGGTCTCGTTTTCGACTAAACCTCAGTAAAGTTAATCTGTGTGAAGCATTTTACCCT 353 ************************************************* ********** consensus_6153#0 GC-TCAAAGCAG-CTCACTCAA-CACCACCAGACCGCGGACACAATTGTTCCGTGGAACG 836 consensus_6153#1 GCGTCAAAGCAGGCTCACTCAAGCACCACCAGACCGCG---------------------- 391 ** ********* ********* *************** consensus_6153#0 AATGTTCATCACCCGTATCTATTTGACTATTCTTATTGACCGTTGACTAATTTTAGGATC 896 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 CAGATAATCAAACCAGTGCTATGCTCACGCTCCTCCCCTACCGTTTCCACCCTGGTGTGC 956 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 GTGCATAATTCATATCAGTTTTAGCAAACCCCTAAAGGTGTCGGTCTATTTTAGAGCAAA 1016 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 AGTATTATGCCACAATGTATGTGTGTCATTATTGGGTAGCGGGATAGTAGAGGTTCACTC 1076 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 CCTTGGGTGCATTTCAACCTTCTAGTTATTAGTGTGATGTTTCGTTACATATGTACGATA 1136 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 ATGCACTCAAATCACAATCTCTTCCCACTTCCCCCCAGATAGTTTTGTTTTATCACACTG 1196 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 TGATTGTATCGTTATTCATAAGTTTAAATGTTTTGTTTACAACGGACACGTCTTTGAGAC 1256 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 GAGTTATGTATTGTAGAGACCTTTGGTGGTATTCAGTATGCAGACATGTATAAACAGAAC 1316 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 TGGTGGTATTTTCTCTTCAACAAGCTCGGGATCATCATCATGATGTATTATCAATTGCAA 1376 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 CGTTTAAGGAAATGGAAACCAAATATATACAATAAAGTTCGGACAATGGTTAAATGAAAA 1436 consensus_6153#1 ------------------------------------------------------------ consensus_6153#0 AAAAA 1441 consensus_6153#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||