These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [GACCCACGCGTCCGTCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGAATTTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCGCATCGTGCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCTAGACATTTAGACAGACAAGGGGAACCGGCGTTCTTTGGTTGCTTTTGTTGTCATGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTGAGATAGAAGCTCCGTCGTGGACAATATTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCTTTGTTTAGACGATACTGTGGAGTTTTCGGTGGTCAAAAGTGCCATATTATTGCAGTGTTTTGTTACATGATAACAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAGATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAATACGTTTCAGCGGT] [+] EMBL BM620120 [GACCCACGCGTCCGTCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGAATTTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCGCATCGTGCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCTAGACATTTAGACAGACAAGGGGAACCGGCGTTCTTTGGTTGCTTTTGTTGTCATGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTGAGATAGAAGCTCCGTCGTGGACAATATTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCTTTGTTTAGACGATACTGTGGAGTTTTCGGTGGTCAAAAGTGCCATATTATTGCAGTGTTTTGTTACATGATAACAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAGATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAATACGTTTCAGCGGT] consensusID : consensus_6161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [ACCCACGCGTCCGCGGACGCGTGGGGGGAGCGGTGGGACGGATTCGATCAAACGATCGTGCAAAAGCTTGAACGGCTGGCGCCGGTATACGTCGATCGGTTGCGCACGTGTCTAGAGCAGGACTGCGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACGGAACCGACGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAACTCAGTTTCTACACGAGCCCGGGCGTGGATCTAAACTATGCGCTTGCTACCTGTCCGAACTACGAGACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTCCAGTACACGGCCCGGCCCATCCCGTCACTCGCCGATGTACGGCGGGAGATAAGGCGGATGGAATTTTTTGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCGCATCGTTCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCT] [+] EMBL BM624560 [ACCCACGCGTCCGCGGACGCGTGGGGGGAGCGGTGGGACGGATTCGATCAAACGATCGTGCAAAAGCTTGAACGGCTGGCGCCGGTATACGTCGATCGGTTGCGCACGTGTCTAGAGCAGGACTGCGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACGGAACCGACGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAACTCAGTTTCTACACGAGCCCGGGCGTGGATCTAAACTATGCGCTTGCTACCTGTCCGAACTACGAGACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTCCAGTACACGGCCCGGCCCATCCCGTCACTCGCCGATGTACGGCGGGAGATAAGGCGGATGGAATTTTTTGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCGCATCGTTCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCT] consensusID : consensus_6161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTGAGGCGTCGGGACAGCTGCGTACCATCTTCGAGAAGGGGCTGGAAGCGCTGATTGCCGTCGCCAGGGAGCGGTGGGACGGGTTCGATCAAACGATCGTGCAAAAGCTGGAAAGGCTGGCGCCGGTGTACATCGATCGGTTGCGCGCGTGTCTTGAGCAGGACTGTGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACCGAACCGGCGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAAATCAGTTTCTACTCGAGCCCGGGCGTGGATCTAAACTATGTGCTTGCTACCTGTCCGAACTACGACACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGAAATTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCCACGGCAAGG] [+] EMBL BM599676 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTGAGGCGTCGGGACAGCTGCGTACCATCTTCGAGAAGGGGCTGGAAGCGCTGATTGCCGTCGCCAGGGAGCGGTGGGACGGGTTCGATCAAACGATCGTGCAAAAGCTGGAAAGGCTGGCGCCGGTGTACATCGATCGGTTGCGCGCGTGTCTTGAGCAGGACTGTGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACCGAACCGGCGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAAATCAGTTTCTACTCGAGCCCGGGCGTGGATCTAAACTATGTGCTTGCTACCTGTCCGAACTACGACACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGAAATTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCCACGGCAAGG] [-] EMBL BX609982 [ AGGGAGCGGTGGGACGGGTTCGATCAAACGATCGTGCAAAAGCTGGAAAGGCTGGCGCCGGTGTACATCGATCGGTTGCGCGCGTGTCTTGAGCAGGACTGTGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACCGAACCGGCGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAAATCAGTTTCTACTCGAGCCCGGGCGTGGATCTAAACTATGTGCTTGCTACCTGTCCGAACTACGACACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTAC ] consensusID : consensus_6161#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [CCGCCCACGCGTCCGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTGAGATAGAAGCTCCGTCGCGGACAATATTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCTTTGTTTAGACGATTCTGTGGAGTTTTCGGTGGTCAAAATTGCCATATTATTGCAGTGTTTTGTTACTTGATTGCAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAAATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAATACGTTTCAACGGTATCTATGGTAACGCTAATGATCTGTCATCGATTGCTTTGACATTCATTTGCAGAAGAATAGAAAATAAGTCGAAATGGTCTTTTACTACAGAAACACTTCGTATACACAATGCAGTCATGAGCTACACCAAATAAAGTGTCATAATT] [+] EMBL BM640311 [CCGCCCACGCGTCCGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTGAGATAGAAGCTCCGTCGCGGACAATATTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCTTTGTTTAGACGATTCTGTGGAGTTTTCGGTGGTCAAAATTGCCATATTATTGCAGTGTTTTGTTACTTGATTGCAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAAATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAATACGTTTCAACGGTATCTATGGTAACGCTAATGATCTGTCATCGATTGCTTTGACATTCATTTGCAGAAGAATAGAAAATAAGTCGAAATGGTCTTTTACTACAGAAACACTTCGTATACACAATGCAGTCATGAGCTACACCAAATAAAGTGTCATAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6161#0 GACCCACGCGTCCGTCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCA 60 consensus_6161#3 ------------------------------------------------------------ consensus_6161#1 ------------------------------------------------------------ consensus_6161#2 ------------------------------------------------------------ consensus_6161#0 GTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGA 120 consensus_6161#3 ------------------------------------------------------------ consensus_6161#1 ------------------------------------------------------------ consensus_6161#2 ------------------------------------------------------------ consensus_6161#0 ATTTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGA 180 consensus_6161#3 ------------------------------------------------------------ consensus_6161#1 ------------------------------------------------------------ consensus_6161#2 ------------------------------------------------------------ consensus_6161#0 CGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGA 240 consensus_6161#3 ------------------------------------------------------------ consensus_6161#1 ------------------------------------------------------------ consensus_6161#2 -----------------------------------------CCGCGGACGCGTGGGCGGA 19 consensus_6161#0 CATACAGTACAATGGGGTGAACTATCAGCGCATCGTGCGTCCGATGCTGATTGAATTCAA 300 consensus_6161#3 ------------------------------------------------------------ consensus_6161#1 ---------------------------------------------------ACCCACGCG 9 consensus_6161#2 CGCGTGGGCGGTGAGGCGTCGGGACAGCTGCGTACCATCTTCGAGAAGGGGCTGGAAGCG 79 consensus_6161#0 TCAGCGCAAGATGCTAGACATTTAGACAGACAAGGGGAACCGGCGTTCTTTGGTTGCTTT 360 consensus_6161#3 -----------------------------------------------------CCGCCCA 7 consensus_6161#1 TCCGCGGACGCGTGGGGGGAGCGGTGGGACGGATTCGATCAAACGATCGTGCAAAAGCTT 69 consensus_6161#2 CTGATTGCCGTCGCCAGGGAGCGGTGGGACGGGTTCGATCAAACGATCGTGCAAAAGCTG 139 consensus_6161#0 TGTTGTCATGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTG---AGATAGAAGCTCCGT 417 consensus_6161#3 CGC-GTC-CGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTG---AGATAGAAGCTCCGT 62 consensus_6161#1 GAACGGCTGGCGCCGGTATACGTCGATC-GGTTGCGCACGTGTCTAGAGCAGGACTGCGA 128 consensus_6161#2 GAAAGGCTGGCGCCGGTGTACATCGATC-GGTTGCGCGCGTGTCTTGAGCAGGACTGTGA 198 * * * * * * * * * ****** *** ** ** * consensus_6161#0 CGTGGACAATA-TTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCT 476 consensus_6161#3 CGCGGACAATA-TTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCT 121 consensus_6161#1 GGCGGACGGTGGCTACCGGGTGCTGAA--CCACGGTGATC--TGTGGTCGAACAATATGC 184 consensus_6161#2 GGCGGACGGTGGCTACCGGGTGCTGAA--CCACGGTGATC--TGTGGTCGAACAATATGC 254 * **** * ** * * * * *** *** ** ** * * * * *** consensus_6161#0 TTGTTTAG-ACGATACTGTGGAGTTTTCGGTGGTCAAAAGTGCCATATTATTGCAGTGTT 535 consensus_6161#3 TTGTTTAG-ACGATTCTGTGGAGTTTTCGGTGGTCAAAATTGCCATATTATTGCAGTGTT 180 consensus_6161#1 TGTTTCGCTACGATCCGACGGAACCGACGACCGTGCAGGATGTGGCGTT----CGTCGAT 240 consensus_6161#2 TGTTTCGCTACGATCCGACCGAACCGGCGACCGTGCAGGATGTGGCGTT----CGTCGAT 310 * ** ***** * ** ** ** * ** ** * * * consensus_6161#0 TTGTTACATGATAACAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAG 595 consensus_6161#3 TTGTTACTTGATTGCAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAA 240 consensus_6161#1 CTGCAACTCAGTTTC-----TACACGAGCCCGGGCGT-GGATCTAAACTATGCGCTTGCT 294 consensus_6161#2 CTGCAAATCAGTTTC-----TACTCGAGCCCGGGCGT-GGATCTAAACTATGTGCTTGCT 364 ** * * * *** * * ** * * * ** * ** * consensus_6161#0 ATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAA 655 consensus_6161#3 ATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAA 300 consensus_6161#1 ACCTGTCCGAACTACGAGACGCGGGCGCGGCTGGACGAGCTGAT-CGAGCTGTACTACGC 353 consensus_6161#2 ACCTGTCCGAACTACGACACGCGGGCGCGGCTGGACGAGCTGAT-CGAGCTGTACTACGC 423 * * * * * * * * ** * * * * * ** consensus_6161#0 TACGTTTCAGCGGT---------------------------------------------- 669 consensus_6161#3 TACGTTTCAACGGTATCTATGGTAACGCTAATGATCTGTC--ATCGATTGCTTTGA-CAT 357 consensus_6161#1 CTCGTTCCGGGACACGCTGGAGCAGCTCCAGTACACGGCCCGGCCCATCCCGTCACTCGC 413 consensus_6161#2 CTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGC 483 **** * consensus_6161#0 ------------------------------------------------------------ consensus_6161#3 TCATTTGCAGAAGAATAGAAAATAAGTCGAAATG-GTCTTTTACTACAGAAACACTTCGT 416 consensus_6161#1 CGATGTACGGCGGGAGATAAGGCGGATGGAATTTTTTGCCCTCGTGTCGGTCGTCTCCGT 473 consensus_6161#2 CGACGTACGGCGGGAGATAAGGCGGATGGAAATTTATGCCCTCGTGTCGGTCGTCTCCGT 543 consensus_6161#0 ------------------------------------------------------------ consensus_6161#3 ATACACAAT-GCAGTCATGAGCTACACCAAATAA--AGTGTCATAATT------------ 461 consensus_6161#1 GCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCAT 533 consensus_6161#2 GCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCAT 603 consensus_6161#0 ------------------------------------------------------------ consensus_6161#3 ------------------------------------------------------------ consensus_6161#1 CGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCG 593 consensus_6161#2 CCACGGCAAGG------------------------------------------------- 614 consensus_6161#0 --------------------------------------------- consensus_6161#3 --------------------------------------------- consensus_6161#1 CATCGTTCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCT 638 consensus_6161#2 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||