These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1194 fasta sequence [AGAGAAAACAAAAGGTAAAAACACATCATATCGACGAGGTGATGTTCTTCGGTCCGACCATACTGGAGCTGCGGCGCCGCCAGTGCCGCGTGTTTGTGCTGTGCCTGTCCGAGGGCAATCACGATTGCGAACCAGCTGCTCCGCCAGCTGGAATCGCTCGACGCGGACTGCTGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCAATTTACTACGCGACCGCTTCGCTGTGTCTTTCCGGCATGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATTTGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGG-AAAGCGCGGCGC-CTG-TGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGGAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGGCAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAGAAAAATTTGCTCTAGCTCTAGTCCTTTCCTTCCATTCGCGTAGGTTCTGTAAATAGATCGCTTTCTTCGGGGAGCAGTCGCCTTTCCTAATGTTTTAGTTTTTTTCTCTCTCTTCTGTTGCTTAAATTTAAAACTAAAACCTTTATGAACTTTTGGAAAATAAAG] [+] EMBL CNS09I36 [AGAGAAAACAAAAGGTAAAAACACATCATATCGACGAGGTGATGTTCTTCGGTCCGACCATACTGGAGCTGCGGCGCCGCCAGTGCCGCGTGTTTGTGCTGTGCCTGTCCGAGGGCAATCACGATTGCGAACCAGCTGCTCCGCCAGCTGGAATCGCTCGACGCGGACTGCTGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCAATTTACTACGCGACCGCTTCGCTGTGTCTTTCCGGCATGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATTTGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGG AAAGCGCGGCGC CTGTTGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGGAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGGCAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAGAAAAATT ] [+] EMBL CNS09NWV [ TGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCAATTTACTACGCGACCGCTTCGCTGTGTCTTTCCGGCATGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATTTGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGG AAAGCGCGGCGC GTG TGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGAAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGACAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGT ] [-] EMBL CNS09I37 [ CATGATACCGAACAATTGTAAAAAATTAACATTAGAAACGGTGAATTTGTGCCGAAAGTATTTGTCGATATTTGTTCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGGAAAAGC CGGCGCGCTG TGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTTACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATAACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGGAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGGCAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAGAAAAATTTGCTCTAGCTCTAGTCCTTTCCTTCCATTCGCGTAGGTTCTGTAAATAGATCGCTTTCTTCGGGGAGCAGTCGCCTTTCCTAATGTTTTAGTTTTTTTCTCTCTCTTCTGTTGCTTAAATTTAAAACTAAAACCTTTATGAACTTTTGGAAAATAAAG] [-] EMBL CNS09NWW [ TGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATTTGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGG AAAAGGCGGCGCGCTG TGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGAAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGACAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAG ] consensusID : consensus_6169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [GTGCTGTGCCTGTCCGAGGGCAATCACGACCGTAAGGGTGCGGTGCGGAGGCAGGAGCTATGGGATGCGTGCGAAAGCATGGGCGTGCGGCCCGAGGACATAACACTCGTTAATGCGACACATTTGCAGGACGATCCGACCGCGGAATGGAGGGCGGTCACGATTGCGAACCAGCTGCTCCGCCAGCTGGAATCGCTCGACGCGGAGCTGCTGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCATTTACTACGCGACCGCTTCGCTGTGTC] [+] EMBL BX613040 [GTGCTGTGCCTGTCCGAGGGCAATCACGACCGTAAGGGTGCGGTGCGGAGGCAGGAGCTATGGGATGCGTGCGAAAGCATGGGCGTGCGGCCCGAGGACATAACACTCGTTAATGCGACACATTTGCAGGACGATCCGACCGCGGAATGGAGGGCGGTCACGATTGCGAACCAGCTGCTCCGCCAGCTGGAATCGCTCGACGCGGAGCTGCTGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCATTTACTACGCGACCGCTTCGCTGTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6169#0 ------------------------------------AGAGAAAACAAAAGGTAAAAAC-A 23 consensus_6169#1 GTGCTGTGCCTGTCCGAGGGCAATCACGACCGTAAGGGTGCGGTGCGGAGGCAGGAGCTA 60 * * *** * * * * consensus_6169#0 CATCATATCGACGAGGTGATGTTCTT-CGGTCCGACCATACTGGA---GCTGCGGCGCCG 79 consensus_6169#1 TGGGATGCGTGCGAAAGCATGGGCGTGCGGCCCGAGGACATAACACTCGTTAATGCGACA 120 ** *** *** * * *** **** * * * * * *** * consensus_6169#0 CCAGTGCCGCGTGTTTGTGCTGTGCCTGTCCGAGGGCAATCACGATTGCGAACCAGCTGC 139 consensus_6169#1 CATTTGCAGGACGATCCGACCGCGG--AATGGAGGGCGGTCACGATTGCGAACCAGCTGC 178 * *** * * * * * * ****** ********************* consensus_6169#0 TCCGCCAGCTGGAATCGCTCGACGCGGA-CTGCTGATCACGTTCGACAAGGAAGGTATCA 198 consensus_6169#1 TCCGCCAGCTGGAATCGCTCGACGCGGAGCTGCTGATCACGTTCGACAAGGAAGGTATCA 238 **************************** ******************************* consensus_6169#0 GCGGCCATCCGAACCATAGTGCAATTTACTACGCGACCGCTTCGCTGTGTCTTTCCGGCA 258 consensus_6169#1 GCGGCCATCCGAACCATAGTGCA-TTTACTACGCGACCGCTTCGCTGTGTC--------- 288 *********************** *************************** consensus_6169#0 TGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATT 318 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 TGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCT 378 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 GGAAAGCGCGGCGCCTGTGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTT 438 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 TCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAA 498 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 CAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACA 558 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 GGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCC 618 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 ATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACAT 678 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 CCACCCAGAACGAATGAAAGCGACGGAGAACAAGAACACGTTCCTAGGATCCAAATAATG 738 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 CTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATA 798 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 AGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGGCAGA 858 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 ATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTT 918 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 GAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAAT 978 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 GATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAGAAAAATTTG 1038 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 CTCTAGCTCTAGTCCTTTCCTTCCATTCGCGTAGGTTCTGTAAATAGATCGCTTTCTTCG 1098 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 GGGAGCAGTCGCCTTTCCTAATGTTTTAGTTTTTTTCTCTCTCTTCTGTTGCTTAAATTT 1158 consensus_6169#1 ------------------------------------------------------------ consensus_6169#0 AAAACTAAAACCTTTATGAACTTTTGGAAAATAAAG 1194 consensus_6169#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||