These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1065 fasta sequence [ATNGCCCCAGGATTTACAGCCGTTCGTGTGTGTGTCGTGTCGTGGAAGTTGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGCAATGATCATCGAACCCATATAGCAGAGCGTGGCTGGCACACAGTGAACAGTAGCAGCAAGCAGGCAGGGGTGTGTATGTTGGCCTTATTGATTNCTTCTAATCCATATTTGCTTTTAATTCCTTTAATCCATTGAATTACCCATCTTGGGTTTTNAAGCAATCTCAACGTGACACACCAGATTTGAAGCAATACGACTACGTANTTATGAGAGCGCTACTGGCGCCCGTGTGTNGTAGGGAAGCCGNCCCGCTATAAGCCTAANATTGACTACNTGTGGCCATNTTAGACGATTCGGGCATAGCCACNCATATTAACACGACAAACATTCCTCCGATAACCAGGCAAGACCCNGCGGCCCTACNACTNTTATNATCCCANTTCCANCAAGANCTTAGAACAACTTAGGAGAATCTTCCATTATAAGAGTAATNGTNNACGACACNANATATGNATCTTCGGCACNAACNNATGGTACAACTTCCGGCGGCCNACCAACTTGNCGAAANTCTTACGGGTANCAGTATNTTGGGCAAAAAANCANTTTGTNGGGCTTTTNCCCAACAAACCANCAGGTTGTNNAAAAAACGGGCCGACACAAGACAACANGAATTTGNCACAAGNGGGACCAAANAGGGGTCNCATCGGGAACGGTTGGTTTGTTANGACAGATAGCACTCGGTAGCGNNTANACGANNACGTCAGTACATAGCGCGCCACGAAGAGNGAGGGGTACCACGTTTCCAACCACCACAAACACTATTNGGAACCACNTATANTAGTAAACNGCNTCCCANACCATTTGGTAAACACTTTAACCGNTTGGTTAACAATCACTTACCACCATTTAACACAGCGNACTCTCCCAAGCGAATATTNACCANTANATAGANA] [+] EMBL AL697510 [ATNGCCCCAGGATTTACAGCCGTTCGTGTGTGTGTCGTGTCGTGGAAGTTGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGCAATGATCATCGAACCCATATAGCAGAGCGTGGCTGGCACACAGTGAACAGTAGCAGCAAGCAGGCAGGGGTGTGTATGTTGGCCTTATTGATTNCTTCTAATCCATATTTGCTTTTAATTCCTTTAATCCATTGAATTACCCATCTTGGGTTTTNAAGCAATCTCAACGTGACACACCAGATTTGAAGCAATACGACTACGTANTTATGAGAGCGCTACTGGCGCCCGTGTGTNGTAGGGAAGCCGNCCCGCTATAAGCCTAANATTGACTACNTGTGGCCATNTTAGACGATTCGGGCATAGCCACNCATATTAACACGACAAACATTCCTCCGATAACCAGGCAAGACCCNGCGGCCCTACNACTNTTATNATCCCANTTCCANCAAGANCTTAGAACAACTTAGGAGAATCTTCCATTATAAGAGTAATNGTNNACGACACNANATATGNATCTTCGGCACNAACNNATGGTACAACTTCCGGCGGCCNACCAACTTGNCGAAANTCTTACGGGTANCAGTATNTTGGGCAAAAAANCANTTTGTNGGGCTTTTNCCCAACAAACCANCAGGTTGTNNAAAAAACGGGCCGACACAAGACAACANGAATTTGNCACAAGNGGGACCAAANAGGGGTCNCATCGGGAACGGTTGGTTTGTTANGACAGATAGCACTCGGTAGCGNNTANACGANNACGTCAGTACATAGCGCGCCACGAAGAGNGAGGGGTACCACGTTTCCAACCACCACAAACACTATTNGGAACCACNTATANTAGTAAACNGCNTCCCANACCATTTGGTAAACACTTTAACCGNTTGGTTAACAATCACTTACCACCATTTAACACAGCGNACTCTCCCAAGCGAATATTNACCANTANATAGANA] consensusID : consensus_6187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 900 fasta sequence [CCGGTGAAATCACAAGACACAAAAGAAACAACACACAGCCGTTCGTGTGTGTGTGTGTCCGTGGAAGTGGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGAATGATCATCGAACCATATAGAGAGCGTGGCGGAAAGGAACAGTAGAGCAAGAGGAGGGGTGTGTTGTGGCTTTTGATTTTCTAATCATTTTGC-TTTTTTTTTCCTTTTTATCATGAATACCATCTGGTTTAAGAATCTCAACGTGACACACAGATTGAGCAATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCTCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAAACTGAATCTCATTAATATGTTTTTTTTTTT-TATTTCGAAACACGAACTCCGCGCACAATGAAAATCTCGTTCGTTTGC-AAAACATTTGCTTTCCAAAACACGTTAAAACGCGAAAGAAGATGCAGGGCAAGGTTTGTGTGTGTGACGTTGCTGGGGTTAGGAGTTTTTTGGCGCGAAGGGGGTTCAGTTCAACACAATCTTGAAACTTTGTTACGTCCAAATTGTAATCTTACGTGTAAATCTTACACTCACGCTCTCCACGATTTTACGATTTAACGCTACGTGTTGTTGTTGGTATAGGTTGCAAAAACCAAACTCTGAGACGCCTTTTTTTGTAGGAAAAGCAAAACACGAACTCTCTCTCTCTTATTTTGCTATGAATATTGTTATCGTCGCCCTAAG] [+] EMBL BM630908 [CCGGTGAAATCACAAGACACAAAAGAAACAACACACAGCCGTTCGTGTGTGTGTGTGTCCGTGGAAGTGGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGAATGATCATCGAACCATATAGAGAGCGTGGCGGAAAGGAACAGTAGAGCAAGAGGAGGGGTGTGTTGTGGCTTTTGATTTTCTAATCATTTTGCTTTTTTTTTTCCTTTTTATCATGAATACCATCTGGTTTAAGAATCTCAACGTGACACACAGATTGAGCAATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCTCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAAACTGAATCTCATTAATATG TTTTTTTTT TATTTCGAAACACGAACTCCGCGCACAATGAAAATCTCGTTCGTTTGC AAAACATTTGCTTTCCAAAACACGTTAAAACGCGAAAGAAGATGCAGGGCAAGGTTTGTGTGTGTGACGTTGCTGGGGTTAGGAGTTTTTTGGCGCGAAGGGGGTTCAGTTCAACACAATCTTGAAACTTTGTTACGTCCAAATTGT ] [+] EMBL BM592819 [ ccgCGATTGCTATCAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGGAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGAATGATCATCGAACCATATAGAGAGCGTGGCGGAAAGGAACAGTAAAGCAAGAGGAGGGGTGTGTTGTGGCTTTTGATTTTCTAATCATTTTGC TTTTTTTTTCCTTTTTATCATGAATACCATTTGGTTTAAGAATCTCAACGTGACACACAGATTGAGCAATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGGTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCgc ] [+] EMBL BX619126 [ CATCGAACCATATAGAGAGCGTGGCGGAAAGGAACAGTAGAGCAAGAGGAGGGGTGTGTTGTGGCTTTTGATTTTCTAATCATTTTGC TTTTTTTTTCCTTTTTATCATGAATACCATCTGGTTTAAGAATCTCAACGTGACACACAGATTGAGCAATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCTCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAAACTGAATCTCATTAATATGTTTTTTTTTTT TATTTCGAAACACGAACTCCGCGCACAATGAAAATCTCGNNCGTTTGCAAAAACATTTGCTTTtccc ] [+] EMBL BX602539 [ AATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCGCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAAACTGAATCTCATTAATATGTTTTTTTTTTTAAATTTCGAAACACGAACTCCGCGCACAATGAAAATCTCGTTCGTTTGC AAAACATTTGCTTTCCAAAACACGTTAAAACGCGAAAGAAGATGCAGGGCAAGGTGTGTGTGTGTGACGTTGCT GTGTTAGGAGTTTTT GCGCG AGGGGGTTCAGTTCAACACAATCTTGAAACTTTGTTACGTCCAAATTGTAATCTTACGTGTAAATCTTACACTCACGCTCTCCACGATTTTACGATTTAACGCTACGTGTTGTTGTTGGTATAGGTTGCAAAAACCAAACTCTGAGACGCCTTTTTTTGTAGGAAAAGCAAAACACGAACTCTCTCTCTCTTATTTTGCTATGAATATTGTTATCGTCGCCCTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6187#0 ------------------ATNGCCCCAG-GATTTACAGCCGTTCGTGTGTGTGTCGTGTC 41 consensus_6187#1 CCGGTGAAATCACAAGACACAAAAGAAACAACACACAGCCGTTCGTGTGTGTGTGTGTCC 60 * * * ******************** * consensus_6187#0 GTGGAAGTTGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAA 101 consensus_6187#1 GTGGAAGTGGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAA 120 ******** *************************************************** consensus_6187#0 AGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCC 161 consensus_6187#1 AGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCC 180 ************************************************************ consensus_6187#0 ATTGTCAGTGCAATGATCATCGAACCCATATAGCAGAGCGTGGCTGGCACACAGTGAACA 221 consensus_6187#1 ATTGTCAGTG-AATGATCATCGAACC-ATATAG-AGAGCGTGGCGGA-----AAGGAACA 232 ********** *************** ****** ********** * * ***** consensus_6187#0 GTAGCAGCAAGCAGGCAGGGGTGTGTATGTTGGCCTTATTGATTNCTTCTAATCCATATT 281 consensus_6187#1 GTAG-----AGCAAGAGGAGGGGTGTGTTGTGGCTT--TTGATTT--TCTAATC-AT-TT 281 **** **** * * ** **** * **** * ****** ******* ** ** consensus_6187#0 TGCTTTTAATTCCTTTAATCCATTGAATTACCCATCTTGGGTTTTNAAGCAATCTCAACG 341 consensus_6187#1 TGCTTTTTTTTTCCTTTTTATCATGAAT--ACCATCTGG----TTTAAG-AATCTCAACG 334 ******* ** * ** * ***** ****** * ** *** ********** consensus_6187#0 TGACACACCAGATTTGAAGCAATACGACTACGTANTTATGAGAGCGCTACTGGCGCCCGT 401 consensus_6187#1 TGACACAC-AGATT--GAGCAATC--GCT-CGTATT--TGAGGCCTCTGC-----CCCGT 381 ******** ***** ****** ** **** * **** * ** * ***** consensus_6187#0 GTGTNGTAGGGAAGCCGNCCCGCTATAAGCCTAANATTGACTACNTGTGGCCATNT-TAG 460 consensus_6187#1 GTGTGT---GGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACAC 438 **** ** ***** **** ** * * ** * * * * * * consensus_6187#0 ACGATTCGGGCATAGCCACNCATATTAACACGACAAACATTCCTCCGATAACCAGGCAAG 520 consensus_6187#1 ATATACAGAAAATCTCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAA 498 * * ** * * ** * * * ** * ** ** * * ** * * consensus_6187#0 ACCCNGCGGCCCTACNACTNTTATNATCCCANTTCC--ANCAAGANCTTAGAACAACTTA 578 consensus_6187#1 ACTGAATCTCATTAATATGTTTTTTTTTTTTATTTCGAAACACGAACTCCGCGCACAATG 558 ** * ** * ** * * ** * * ** ** ** * ** * consensus_6187#0 GGAGAATCTTCCATTATAAGAGTAATNGTNNACGACACNANATATGNATCTTCGGCACNA 638 consensus_6187#1 AAAATCTCGTTCGTTTGCAAAACATTTGCTTTC--CAAAACACGTTAAAACGCGAAA-GA 615 * ** * * ** * * * * * * ** * * * * ** * * consensus_6187#0 ACNNATGGTACAACTTCCGGCGGCCNACCAACTTGNCGAAANTCTTACGGGTANCAGTAT 698 consensus_6187#1 AGATGCAGGGCAA--------GGTTTGTGTGTGTGACG---TTGCTGGGGTTAGGAGTTT 664 * * *** ** ** ** * * ** ** *** * consensus_6187#0 NTTGGGCAAAAAANCANTTTGTNGGGCTTTTNCCCAACAAACCANCAGGTTGTNNAAAAA 758 consensus_6187#1 TTTGGCGCGAAGGGGGTTCAGTTCAACACAATCTTGAAACTTTGTTA---CGTCCAAATT 721 **** ** * ** * * * * * ** *** consensus_6187#0 ACGGGCCGACACAAGACAACANGAATTTGNCACAAGNGGGACCAAANAGGGGTCNCATCG 818 consensus_6187#1 GTAATCTTACGTG--------TAAATCTTACACTCACG---------------CTCTCCA 758 * ** *** * *** * * * * consensus_6187#0 GGAACGGTTGGTTTGTTANGACAGATAGCACTCGGTAGCGNNTANACGANNACGTCAGTA 878 consensus_6187#1 CGATTTTACGATTTAACGCTACGTGTTGTTGTTGGTATAGGTTGCA--AAAACCAAACTC 816 ** * *** ** * * * **** * * * * ** * * consensus_6187#0 CATAGCGCGCCACGAAGAGNGAGGGGTACCACGTTTCCAACCACCACAAACACTATTNGG 938 consensus_6187#1 TGAGACGCCTTTTTTTGTAGGAAAAGCAAAACA---CGAACTCTCTCTCTC-TTATTTTG 872 *** * ** * * ** * *** * * * **** * consensus_6187#0 AACCACNTATANTAGTAAACNGCNTCCCANACCATTTGGTAAACACTTTAACCGNTTGGT 998 consensus_6187#1 --CTATGAATATT-GTTATCGTCGCCCTAAG----------------------------- 900 * * *** * ** * * * ** * consensus_6187#0 TAACAATCACTTACCACCATTTAACACAGCGNACTCTCCCAAGCGAATATTNACCANTAN 1058 consensus_6187#1 ------------------------------------------------------------ consensus_6187#0 ATAGANA 1065 consensus_6187#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||